Wall clock time and date at job start Tue Mar 31 2020 05:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.82064 * 2 1 4 4 C 1.54379 * 109.83258 * 120.88606 * 2 1 3 5 5 C 1.55307 * 102.24916 * 98.15841 * 4 2 1 6 6 C 1.54946 * 100.94568 * 34.13325 * 5 4 2 7 7 H 1.09001 * 110.31043 * 82.56504 * 6 5 4 8 8 C 1.50699 * 110.31275 * 204.63708 * 6 5 4 9 9 O 1.21296 * 119.99590 * 113.53546 * 8 6 5 10 10 N 1.34775 * 120.00231 * 293.53519 * 8 6 5 11 11 C 1.37094 * 119.99954 * 354.93804 * 10 8 6 12 12 H 1.08000 * 119.99990 * 322.84819 * 11 10 8 13 13 C 1.38956 * 120.00127 * 142.84051 * 11 10 8 14 14 N 1.31401 * 119.99944 * 158.73472 * 13 11 10 15 15 Si 1.86800 * 119.99961 * 338.73946 * 13 11 10 16 16 H 1.48496 * 109.47220 * 95.27209 * 15 13 11 17 17 H 1.48497 * 109.47124 * 215.27464 * 15 13 11 18 18 H 1.48502 * 109.47202 * 335.27657 * 15 13 11 19 19 C 1.46499 * 119.99711 * 174.93495 * 10 8 6 20 20 C 1.52996 * 109.47159 * 90.00456 * 19 10 8 21 21 C 1.50701 * 109.47379 * 179.97438 * 20 19 10 22 22 O 1.20819 * 119.99917 * 0.02562 * 21 20 19 23 23 O 1.34226 * 119.99957 * 179.97438 * 21 20 19 24 24 O 1.43244 * 109.82857 * 239.02644 * 2 1 3 25 25 H 1.09000 * 109.47486 * 299.10658 * 1 2 3 26 26 H 1.08998 * 109.47502 * 59.11213 * 1 2 3 27 27 H 1.09006 * 109.46753 * 179.11159 * 1 2 3 28 28 H 1.09000 * 109.47038 * 180.89065 * 3 2 1 29 29 H 1.09009 * 109.47431 * 300.88760 * 3 2 1 30 30 H 1.08996 * 109.47415 * 60.88628 * 3 2 1 31 31 H 1.08997 * 110.84797 * 339.97345 * 4 2 1 32 32 H 1.08996 * 111.02122 * 216.42272 * 4 2 1 33 33 H 1.09004 * 111.12977 * 276.21216 * 5 4 2 34 34 H 1.09004 * 111.16103 * 152.06575 * 5 4 2 35 35 H 0.97005 * 120.00088 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.47640 * 330.00337 * 19 10 8 37 37 H 1.09003 * 109.46903 * 209.99855 * 19 10 8 38 38 H 1.09007 * 109.47179 * 300.00089 * 20 19 10 39 39 H 1.09009 * 109.47265 * 59.99120 * 20 19 10 40 40 H 0.96700 * 116.99837 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4393 0.0000 4 6 2.0538 -0.7455 1.2463 5 6 2.3682 -2.1564 0.6784 6 6 2.8407 -1.7987 -0.7532 7 1 3.8904 -1.5051 -0.7429 8 6 2.6351 -2.9692 -1.6798 9 8 1.8271 -2.8943 -2.5814 10 7 3.3488 -4.0993 -1.5067 11 6 4.3343 -4.1486 -0.5549 12 1 4.9526 -3.2821 -0.3724 13 6 4.5374 -5.3133 0.1752 14 7 5.6925 -5.5264 0.7642 15 14 3.1685 -6.5761 0.3192 16 1 3.3496 -7.6230 -0.7182 17 1 3.2110 -7.2009 1.6657 18 1 1.8565 -5.9083 0.1245 19 6 3.0715 -5.2749 -2.3356 20 6 3.9369 -5.2257 -3.5964 21 6 3.6521 -6.4354 -4.4488 22 8 2.8399 -7.2527 -4.0855 23 8 4.3000 -6.6042 -5.6121 24 8 2.0159 -0.6935 -1.1554 25 1 -0.3634 0.4999 0.8979 26 1 -0.3634 0.5275 -0.8819 27 1 -0.3633 -1.0276 -0.0159 28 1 3.1386 1.4327 -0.0160 29 1 1.6757 1.9601 -0.8820 30 1 1.7016 1.9507 0.8978 31 1 1.2851 -0.8001 2.0172 32 1 2.9565 -0.2733 1.6336 33 1 1.4731 -2.7780 0.6528 34 1 3.1636 -2.6404 1.2451 35 1 5.8345 -6.3397 1.2736 36 1 2.0186 -5.2806 -2.6177 37 1 3.3016 -6.1792 -1.7722 38 1 3.7069 -4.3213 -4.1599 39 1 4.9898 -5.2200 -3.3143 40 1 4.0840 -7.3956 -6.1241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593871580.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:51 Heat of formation + Delta-G solvation = -190.062613 kcal Electronic energy + Delta-G solvation = -23924.466492 eV Core-core repulsion = 20317.694314 eV Total energy + Delta-G solvation = -3606.772178 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62291 -41.18799 -39.83693 -37.34015 -36.92576 -34.30584 -34.04012 -33.27827 -32.07799 -28.18816 -27.99135 -27.00501 -25.57435 -23.16376 -22.26869 -21.17155 -20.77172 -19.41566 -18.80213 -18.38716 -17.89040 -17.39985 -17.00523 -16.43112 -16.32609 -15.97367 -15.75573 -15.00675 -14.73311 -14.60943 -14.44722 -14.30980 -14.09223 -13.74722 -13.60325 -13.26662 -13.09037 -12.90298 -12.78390 -12.68531 -12.63483 -12.51880 -12.41370 -12.14107 -11.84254 -11.72995 -11.63007 -11.43735 -11.13645 -10.75896 -10.20796 -9.88751 -8.55943 -6.17004 1.09185 1.15996 1.29802 1.37763 1.69330 1.88817 2.13542 2.38992 2.87571 3.14860 3.61801 3.74967 3.81881 3.92169 3.95347 4.13403 4.22591 4.27057 4.28337 4.45245 4.52170 4.62924 4.70181 4.79554 4.81285 4.84285 4.91590 5.00045 5.03307 5.15294 5.22259 5.31278 5.33074 5.46483 5.50266 5.98501 6.15589 6.24320 6.91080 6.91899 7.32464 7.67671 8.56644 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017075 B = 0.006050 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.387558 B = 4626.609549 C = 5587.840012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.082 3.918 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.130 4.130 6 C 0.089 3.911 7 H 0.094 0.906 8 C 0.476 3.524 9 O -0.607 6.607 10 N -0.466 5.466 11 C -0.337 4.337 12 H 0.100 0.900 13 C 0.052 3.948 14 N -0.879 5.879 15 Si 0.901 3.099 16 H -0.274 1.274 17 H -0.278 1.278 18 H -0.271 1.271 19 C 0.113 3.887 20 C -0.119 4.119 21 C 0.496 3.504 22 O -0.552 6.552 23 O -0.504 6.504 24 O -0.380 6.380 25 H 0.095 0.905 26 H 0.055 0.945 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.281 0.719 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 6.500 -0.402 7.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.043 3.957 3 C -0.203 4.203 4 C -0.172 4.172 5 C -0.168 4.168 6 C 0.029 3.971 7 H 0.111 0.889 8 C 0.266 3.734 9 O -0.491 6.491 10 N -0.188 5.188 11 C -0.464 4.464 12 H 0.118 0.882 13 C -0.155 4.155 14 N -0.515 5.515 15 Si 0.729 3.271 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.196 1.196 19 C -0.010 4.010 20 C -0.157 4.157 21 C 0.340 3.660 22 O -0.444 6.444 23 O -0.317 6.317 24 O -0.299 6.299 25 H 0.114 0.886 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.131 0.869 39 H 0.141 0.859 40 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -3.606 6.607 -0.611 7.552 hybrid contribution -0.516 -1.775 -0.188 1.858 sum -4.122 4.832 -0.799 6.401 Atomic orbital electron populations 1.22065 0.93690 1.01631 1.03127 1.22484 0.94827 0.93478 0.84925 1.22055 1.01458 0.93502 1.03241 1.23242 1.03262 0.93259 0.97390 1.22994 1.01803 0.98409 0.93567 1.22425 0.95827 0.85241 0.93630 0.88883 1.20965 0.80439 0.85725 0.86232 1.90542 1.38698 1.83748 1.36146 1.43731 1.32480 1.10459 1.32129 1.18960 1.10170 1.02126 1.15105 0.88215 1.25547 0.96355 0.98404 0.95178 1.69761 1.21677 1.27479 1.32580 0.86551 0.82330 0.80807 0.77414 1.20134 1.20472 1.19605 1.21354 0.98959 0.89382 0.91339 1.21577 1.04423 0.95097 0.94620 1.23293 0.76457 0.86426 0.79824 1.90693 1.35056 1.45980 1.72644 1.84502 1.63960 1.50695 1.32554 1.88473 1.67605 1.42169 1.31693 0.88625 0.92597 0.94205 0.92313 0.92472 0.88824 0.87908 0.88583 0.92578 0.88464 0.90839 0.91763 0.91722 0.86885 0.85946 0.70924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 8.73 71.98 0.63 -3.17 16 2 C 0.08 2.31 1.27 -10.33 -0.01 2.30 16 3 C -0.15 -3.21 8.75 71.98 0.63 -2.58 16 4 C -0.13 -3.45 6.08 31.85 0.19 -3.25 16 5 C -0.13 -4.52 5.92 32.05 0.19 -4.33 16 6 C 0.09 3.56 3.05 30.51 0.09 3.65 16 7 H 0.09 3.60 7.36 -2.39 -0.02 3.58 16 8 C 0.48 22.38 7.03 87.66 0.62 23.00 16 9 O -0.61 -31.76 16.18 15.41 0.25 -31.51 16 10 N -0.47 -21.67 2.19 -635.54 -1.39 -23.06 16 11 C -0.34 -16.09 7.76 84.04 0.65 -15.44 16 12 H 0.10 4.91 7.13 -2.91 -0.02 4.89 16 13 C 0.05 2.54 5.33 84.93 0.45 2.99 16 14 N -0.88 -45.05 13.96 21.66 0.30 -44.75 16 15 Si 0.90 41.29 24.95 68.60 1.71 43.00 16 16 H -0.27 -12.77 6.68 99.48 0.66 -12.11 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 18 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 19 C 0.11 5.07 3.46 86.38 0.30 5.37 16 20 C -0.12 -4.44 6.13 29.85 0.18 -4.25 16 21 C 0.50 17.05 8.33 71.24 0.59 17.64 16 22 O -0.55 -22.37 16.74 21.99 0.37 -22.01 16 23 O -0.50 -12.70 13.42 -51.38 -0.69 -13.39 16 24 O -0.38 -14.82 9.93 -130.49 -1.30 -16.12 16 25 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.10 2.14 7.82 -2.39 -0.02 2.13 16 32 H 0.10 2.13 7.86 -2.39 -0.02 2.11 16 33 H 0.06 2.10 8.05 -2.39 -0.02 2.09 16 34 H 0.10 3.50 7.35 -2.39 -0.02 3.49 16 35 H 0.28 13.61 8.31 -92.70 -0.77 12.84 16 36 H 0.06 3.04 7.46 -2.39 -0.02 3.02 16 37 H 0.06 3.04 3.08 -2.39 -0.01 3.03 16 38 H 0.11 4.12 8.14 -2.38 -0.02 4.10 16 39 H 0.12 4.41 8.14 -2.38 -0.02 4.39 16 40 H 0.43 6.39 9.10 -74.06 -0.67 5.72 16 Total: -1.00 -66.10 328.75 4.11 -61.99 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.34 Total: 23.93 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 4.52 Total: 21.92 kcal Atomic # 7 Polarization: -66.72 SS G_CDS: -1.09 Total: -67.81 kcal Atomic # 8 Polarization: -81.66 SS G_CDS: -1.37 Total: -83.03 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.71 Total: 43.00 kcal Total: -66.10 4.11 -61.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593871580.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.076 kcal (2) G-P(sol) polarization free energy of solvation -66.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds