Wall clock time and date at job start Tue Mar 31 2020 05:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 112.85026 * 2 1 4 4 C 1.42887 * 114.00156 * 65.43344 * 3 2 1 5 5 C 1.50700 * 109.47277 * 180.42640 * 4 3 2 6 6 O 1.21290 * 120.00253 * 4.85075 * 5 4 3 7 7 N 1.34783 * 120.00145 * 184.85035 * 5 4 3 8 8 C 1.37096 * 119.99804 * 354.97837 * 7 5 4 9 9 H 1.08008 * 119.99985 * 323.21135 * 8 7 5 10 10 C 1.38951 * 119.99964 * 143.21085 * 8 7 5 11 11 N 1.31403 * 120.00015 * 338.64004 * 10 8 7 12 12 Si 1.86801 * 120.00108 * 158.64050 * 10 8 7 13 13 H 1.48498 * 109.47224 * 89.99907 * 12 10 8 14 14 H 1.48495 * 109.47378 * 210.00191 * 12 10 8 15 15 H 1.48502 * 109.47012 * 330.00113 * 12 10 8 16 16 C 1.46496 * 120.00123 * 175.25101 * 7 5 4 17 17 C 1.52998 * 109.47050 * 89.99768 * 16 7 5 18 18 C 1.50703 * 109.47234 * 179.97438 * 17 16 7 19 19 O 1.20830 * 119.99684 * 0.02562 * 18 17 16 20 20 O 1.34225 * 119.99990 * 179.97438 * 18 17 16 21 21 C 1.53783 * 113.61404 * 131.19730 * 2 1 3 22 22 C 1.53950 * 87.02243 * 89.22837 * 21 2 1 23 23 C 1.53782 * 113.61390 * 228.80133 * 2 1 3 24 24 H 1.08999 * 109.46729 * 64.33066 * 1 2 3 25 25 H 1.09004 * 109.47131 * 184.32643 * 1 2 3 26 26 H 1.08996 * 109.47322 * 304.33107 * 1 2 3 27 27 H 1.09006 * 109.47287 * 60.42794 * 4 3 2 28 28 H 1.09001 * 109.47424 * 300.43151 * 4 3 2 29 29 H 0.97001 * 119.99897 * 185.05674 * 11 10 8 30 30 H 1.09000 * 109.47245 * 209.99985 * 16 7 5 31 31 H 1.09002 * 109.46894 * 330.00268 * 16 7 5 32 32 H 1.08996 * 109.47887 * 300.00570 * 17 16 7 33 33 H 1.09002 * 109.46864 * 60.00482 * 17 16 7 34 34 H 0.96705 * 116.99711 * 180.02562 * 20 18 17 35 35 H 1.09004 * 113.61155 * 203.74927 * 21 2 1 36 36 H 1.08999 * 113.61129 * 334.64433 * 21 2 1 37 37 H 1.09002 * 113.53953 * 270.81406 * 22 21 2 38 38 H 1.08998 * 113.74553 * 139.94224 * 22 21 2 39 39 H 1.09001 * 113.61499 * 25.35403 * 23 2 1 40 40 H 1.09002 * 113.61312 * 156.25275 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0849 1.3169 0.0000 4 6 1.8105 2.0632 1.1872 5 6 2.4306 3.4321 1.0746 6 8 2.9708 3.7702 0.0426 7 7 2.3849 4.2808 2.1206 8 6 1.6863 3.9399 3.2499 9 1 0.7597 3.3911 3.1666 10 6 2.1702 4.3003 4.5015 11 7 3.4452 4.5767 4.6584 12 14 1.0082 4.3918 5.9613 13 1 0.9567 3.0702 6.6366 14 1 1.4951 5.4178 6.9181 15 1 -0.3509 4.7600 5.4898 16 6 3.0767 5.5701 2.0487 17 6 2.1283 6.6267 1.4785 18 6 2.8398 7.9531 1.4050 19 8 3.9878 8.0439 1.7707 20 8 2.1985 9.0334 0.9324 21 6 2.1460 -0.9281 1.0602 22 6 2.0950 -2.0420 -0.0012 23 6 2.1460 -0.9281 -1.0602 24 1 -0.3633 0.4452 -0.9263 25 1 -0.3633 -1.0248 0.0775 26 1 -0.3634 0.5795 0.8486 27 1 2.2309 1.5437 2.0483 28 1 0.7323 2.1620 1.3133 29 1 3.7971 4.7566 5.5442 30 1 3.3944 5.8683 3.0478 31 1 3.9495 5.4785 1.4021 32 1 1.8105 6.3286 0.4794 33 1 1.2556 6.7183 2.1251 34 1 2.6963 9.8620 0.9041 35 1 3.1585 -0.6477 1.3506 36 1 1.4939 -1.1079 1.9150 37 1 1.1595 -2.6014 -0.0006 38 1 2.9737 -2.6869 -0.0032 39 1 1.4939 -1.1080 -1.9150 40 1 3.1585 -0.6478 -1.3506 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594068755.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:13 Heat of formation + Delta-G solvation = -151.086615 kcal Electronic energy + Delta-G solvation = -23246.380460 eV Core-core repulsion = 19641.298408 eV Total energy + Delta-G solvation = -3605.082052 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.83645 -39.65229 -38.39738 -35.83987 -35.42039 -34.68176 -31.99351 -30.77729 -28.96579 -27.33533 -25.55133 -25.24314 -23.69341 -22.81440 -20.51571 -19.21657 -18.54296 -17.77516 -17.01376 -16.75840 -16.03844 -15.80250 -15.40582 -15.19725 -14.80525 -14.64727 -14.32130 -13.62496 -13.58366 -13.03343 -12.82333 -12.65038 -12.43406 -12.21199 -12.05525 -11.67772 -11.58259 -11.29253 -11.17763 -11.14008 -11.06484 -10.90339 -10.73196 -10.55211 -10.47675 -10.12906 -10.06753 -9.91821 -9.23585 -9.00545 -8.43887 -7.62916 -6.47181 -4.19220 2.68613 3.03295 3.15240 3.17513 3.41047 3.71357 3.98800 4.06613 4.65535 4.69391 4.85970 4.86491 4.88705 5.15278 5.47938 5.57021 5.61345 5.76125 5.81597 5.82088 5.91189 5.93451 5.95328 5.96806 6.11643 6.12023 6.20151 6.28520 6.35501 6.37049 6.54363 6.81762 6.86936 7.24702 7.40158 7.73497 7.80177 8.25596 8.32708 8.97709 9.40305 9.83458 10.54365 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014671 B = 0.005167 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.101625 B = 5417.913528 C = 6730.096291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.084 3.916 3 O -0.352 6.352 4 C 0.065 3.935 5 C 0.475 3.525 6 O -0.585 6.585 7 N -0.438 5.438 8 C -0.355 4.355 9 H 0.091 0.909 10 C 0.049 3.951 11 N -0.851 5.851 12 Si 0.912 3.088 13 H -0.275 1.275 14 H -0.280 1.280 15 H -0.267 1.267 16 C 0.128 3.872 17 C -0.125 4.125 18 C 0.483 3.517 19 O -0.515 6.515 20 O -0.525 6.525 21 C -0.164 4.164 22 C -0.139 4.139 23 C -0.120 4.120 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.274 0.726 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.401 0.599 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.190 -4.955 -3.803 8.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.044 3.956 3 O -0.270 6.270 4 C -0.014 4.014 5 C 0.264 3.736 6 O -0.469 6.469 7 N -0.159 5.159 8 C -0.483 4.483 9 H 0.108 0.892 10 C -0.159 4.159 11 N -0.486 5.486 12 Si 0.738 3.262 13 H -0.201 1.201 14 H -0.206 1.206 15 H -0.191 1.191 16 C 0.004 3.996 17 C -0.164 4.164 18 C 0.325 3.675 19 O -0.402 6.402 20 O -0.336 6.336 21 C -0.202 4.202 22 C -0.177 4.177 23 C -0.157 4.157 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.134 0.866 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.258 0.742 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.576 -4.940 -4.193 8.548 hybrid contribution -0.422 0.556 1.199 1.387 sum -5.998 -4.384 -2.994 8.010 Atomic orbital electron populations 1.22020 0.94313 1.02219 1.02942 1.22945 0.92744 0.82815 0.97136 1.88026 1.75093 1.24894 1.38998 1.21968 0.99475 0.92013 0.87908 1.20143 0.82740 0.85776 0.84984 1.90558 1.48369 1.77665 1.30325 1.43287 1.46557 1.12633 1.13375 1.19394 1.04924 1.40615 0.83321 0.89182 1.25427 0.95394 0.96061 0.99053 1.69848 1.11768 1.42802 1.24150 0.86169 0.80681 0.78474 0.80871 1.20079 1.20576 1.19126 1.21188 0.92556 0.81735 1.04089 1.21866 1.01486 0.88286 1.04751 1.23801 0.85366 0.85992 0.72302 1.90702 1.18870 1.85611 1.45042 1.84593 1.49604 1.20954 1.78465 1.23609 1.02433 0.96741 0.97385 1.22722 1.01993 0.96108 0.96857 1.23017 1.02140 0.94126 0.96413 0.91630 0.91589 0.91719 0.90650 0.91823 0.91580 0.86582 0.91649 0.88371 0.87730 0.74160 0.89157 0.91202 0.90215 0.91084 0.91086 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.04 37.16 0.34 -1.68 16 2 C 0.08 1.27 1.35 -89.81 -0.12 1.15 16 3 O -0.35 -7.12 9.81 -55.09 -0.54 -7.67 16 4 C 0.07 1.36 4.72 36.01 0.17 1.53 16 5 C 0.48 11.76 7.69 -10.98 -0.08 11.68 16 6 O -0.59 -16.07 16.13 -14.31 -0.23 -16.30 16 7 N -0.44 -10.79 2.52 -114.81 -0.29 -11.08 16 8 C -0.36 -8.54 8.54 -14.93 -0.13 -8.67 16 9 H 0.09 2.03 7.22 -52.48 -0.38 1.65 16 10 C 0.05 1.17 4.96 -17.47 -0.09 1.08 16 11 N -0.85 -22.02 11.42 55.50 0.63 -21.39 16 12 Si 0.91 18.50 29.61 -169.99 -5.03 13.47 16 13 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 16 C 0.13 3.09 4.26 -4.04 -0.02 3.07 16 17 C -0.12 -2.49 6.13 -27.88 -0.17 -2.67 16 18 C 0.48 9.02 8.33 36.01 0.30 9.32 16 19 O -0.51 -11.13 16.74 -18.75 -0.31 -11.44 16 20 O -0.52 -7.62 13.42 -39.24 -0.53 -8.15 16 21 C -0.16 -2.22 6.64 -25.83 -0.17 -2.39 16 22 C -0.14 -1.53 7.74 -25.83 -0.20 -1.73 16 23 C -0.12 -1.54 7.50 -25.92 -0.19 -1.74 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.68 7.31 -51.93 -0.38 0.30 16 26 H 0.06 0.84 6.79 -51.93 -0.35 0.49 16 27 H 0.08 1.55 7.47 -51.93 -0.39 1.17 16 28 H 0.06 1.20 6.37 -51.93 -0.33 0.87 16 29 H 0.27 6.70 8.32 -40.82 -0.34 6.36 16 30 H 0.12 3.01 5.44 -51.93 -0.28 2.73 16 31 H 0.07 1.69 7.45 -51.93 -0.39 1.31 16 32 H 0.10 1.94 8.14 -51.93 -0.42 1.51 16 33 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 34 H 0.40 3.86 9.10 45.56 0.41 4.28 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.08 0.75 7.61 -51.93 -0.40 0.35 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 336.01 15.07 5.06 5.06 Total: -1.00 -31.47 336.01 -6.60 -38.07 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -4.99 Total: 10.48 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -0.37 Total: 8.95 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.34 Total: -32.47 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -1.61 Total: -43.56 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.47 -6.60 -38.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594068755.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.015 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds