Wall clock time and date at job start Tue Mar 31 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.32952 * 2 1 4 4 C 1.54475 * 110.46826 * 237.69022 * 2 1 3 5 5 C 1.54506 * 104.06694 * 217.13888 * 4 2 1 6 6 H 1.09002 * 110.51182 * 118.63955 * 5 4 2 7 7 C 1.52993 * 110.51448 * 241.35635 * 5 4 2 8 8 C 1.54479 * 104.06156 * 0.02562 * 5 4 2 9 9 H 1.08996 * 110.46779 * 265.09742 * 8 5 4 10 10 C 1.50698 * 110.37475 * 142.80424 * 8 5 4 11 11 O 1.21289 * 120.00370 * 258.83514 * 10 8 5 12 12 N 1.34783 * 119.99715 * 78.83160 * 10 8 5 13 13 C 1.37102 * 119.99903 * 5.00209 * 12 10 8 14 14 H 1.07997 * 120.00480 * 40.65070 * 13 12 10 15 15 C 1.38952 * 119.99843 * 220.66123 * 13 12 10 16 16 N 1.31413 * 119.99767 * 18.98676 * 15 13 12 17 17 Si 1.86792 * 120.00158 * 198.99664 * 15 13 12 18 18 H 1.48507 * 109.47391 * 89.99186 * 17 15 13 19 19 H 1.48497 * 109.47260 * 209.99696 * 17 15 13 20 20 H 1.48508 * 109.46875 * 329.99690 * 17 15 13 21 21 C 1.46493 * 119.99828 * 184.99388 * 12 10 8 22 22 C 1.52995 * 109.47517 * 269.26189 * 21 12 10 23 23 C 1.50704 * 109.47171 * 180.02562 * 22 21 12 24 24 O 1.20818 * 119.99886 * 0.02562 * 23 22 21 25 25 O 1.34234 * 119.99715 * 180.02562 * 23 22 21 26 26 O 1.44426 * 110.37595 * 122.25164 * 2 1 3 27 27 H 1.09000 * 109.47238 * 299.19524 * 1 2 3 28 28 H 1.08997 * 109.47123 * 59.20165 * 1 2 3 29 29 H 1.09007 * 109.46768 * 179.20208 * 1 2 3 30 30 H 1.09002 * 110.51117 * 335.78554 * 4 2 1 31 31 H 1.09000 * 110.51576 * 98.49382 * 4 2 1 32 32 H 1.09005 * 109.47181 * 181.59081 * 7 5 4 33 33 H 1.09004 * 109.47357 * 301.58763 * 7 5 4 34 34 H 1.08996 * 109.47161 * 61.59170 * 7 5 4 35 35 H 0.97003 * 119.99670 * 180.02562 * 16 15 13 36 36 H 1.09006 * 109.46900 * 149.26483 * 21 12 10 37 37 H 1.08998 * 109.47626 * 29.26849 * 21 12 10 38 38 H 1.09003 * 109.47416 * 300.00469 * 22 21 12 39 39 H 1.09006 * 109.46796 * 60.00230 * 22 21 12 40 40 H 0.96701 * 117.00149 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0702 -0.7735 -1.2232 5 6 3.3208 -1.5030 -0.6838 6 1 3.2003 -2.5829 -0.7708 7 6 4.5744 -1.0403 -1.4288 8 6 3.3880 -1.0845 0.8017 9 1 4.0518 -0.2291 0.9271 10 6 3.8545 -2.2384 1.6514 11 8 3.0511 -2.8865 2.2882 12 7 5.1647 -2.5502 1.7036 13 6 6.0841 -1.7570 1.0670 14 1 5.9843 -0.6821 1.0991 15 6 7.1442 -2.3360 0.3802 16 7 7.0812 -3.5974 0.0172 17 14 8.6589 -1.3215 -0.0268 18 1 9.6410 -1.4316 1.0817 19 1 9.2705 -1.8267 -1.2821 20 1 8.2693 0.1007 -0.2034 21 6 5.6065 -3.7366 2.4407 22 6 5.9195 -3.3509 3.8877 23 6 6.3745 -4.5713 4.6458 24 8 6.4419 -5.6398 4.0860 25 8 6.7049 -4.4711 5.9430 26 8 2.0329 -0.7225 1.1450 27 1 -0.3634 0.5013 0.8971 28 1 -0.3633 0.5262 -0.8827 29 1 -0.3633 -1.0276 -0.0143 30 1 1.3314 -1.4927 -1.5769 31 1 2.3450 -0.0833 -2.0207 32 1 5.4412 -1.5853 -1.0549 33 1 4.4558 -1.2340 -2.4949 34 1 4.7195 0.0278 -1.2674 35 1 7.8215 -4.0017 -0.4618 36 1 6.5022 -4.1434 1.9712 37 1 4.8165 -4.4876 2.4276 38 1 6.7095 -2.5999 3.9008 39 1 5.0238 -2.9441 4.3572 40 1 6.9905 -5.2812 6.3871 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594217745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:50 Heat of formation + Delta-G solvation = -177.876356 kcal Electronic energy + Delta-G solvation = -24032.520661 eV Core-core repulsion = 20426.276919 eV Total energy + Delta-G solvation = -3606.243742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.90643 -39.59332 -37.82202 -35.78781 -34.99316 -32.97962 -32.08356 -31.68920 -30.46706 -26.42403 -26.24264 -25.22373 -23.44113 -21.27484 -20.56202 -19.99245 -19.22880 -17.79544 -17.08673 -16.27432 -15.96286 -15.64020 -15.51354 -14.98327 -14.67338 -14.37990 -13.78169 -13.53182 -13.33480 -12.89240 -12.69697 -12.55791 -12.28294 -12.11662 -12.00748 -11.69047 -11.48222 -11.26856 -11.22411 -11.14397 -10.92107 -10.78368 -10.63222 -10.43653 -10.17753 -10.10476 -10.06596 -9.99741 -9.26204 -9.05532 -8.38863 -7.63516 -6.47734 -4.23326 2.67320 3.03667 3.14676 3.15821 3.38795 3.77149 3.95915 4.18042 4.80876 4.91942 5.04185 5.17619 5.35674 5.53052 5.55659 5.64854 5.75052 5.80528 5.84382 5.98787 6.01130 6.12205 6.21445 6.22675 6.25917 6.33509 6.39542 6.40258 6.56911 6.79494 6.84633 6.87078 7.22926 7.25782 7.35028 7.42105 7.79604 8.23923 8.31319 8.94903 9.37262 9.80752 10.52662 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014016 B = 0.006776 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.222928 B = 4131.499961 C = 5643.926565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.067 3.933 3 H 0.063 0.937 4 C -0.148 4.148 5 C -0.093 4.093 6 H 0.079 0.921 7 C -0.154 4.154 8 C 0.082 3.918 9 H 0.085 0.915 10 C 0.485 3.515 11 O -0.584 6.584 12 N -0.437 5.437 13 C -0.345 4.345 14 H 0.091 0.909 15 C 0.049 3.951 16 N -0.849 5.849 17 Si 0.906 3.094 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.131 3.869 22 C -0.125 4.125 23 C 0.483 3.517 24 O -0.515 6.515 25 O -0.524 6.524 26 O -0.354 6.354 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.040 0.960 34 H 0.044 0.956 35 H 0.273 0.727 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 5.566 0.131 5.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.009 3.991 3 H 0.081 0.919 4 C -0.186 4.186 5 C -0.112 4.112 6 H 0.097 0.903 7 C -0.211 4.211 8 C 0.021 3.979 9 H 0.102 0.898 10 C 0.273 3.727 11 O -0.467 6.467 12 N -0.157 5.157 13 C -0.473 4.473 14 H 0.108 0.892 15 C -0.159 4.159 16 N -0.483 5.483 17 Si 0.732 3.268 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.190 1.190 21 C 0.007 3.993 22 C -0.164 4.164 23 C 0.326 3.674 24 O -0.403 6.403 25 O -0.336 6.336 26 O -0.272 6.272 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.127 0.873 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.130 0.870 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -2.684 5.102 0.167 5.767 hybrid contribution 1.224 0.008 -0.147 1.233 sum -1.460 5.110 0.020 5.314 Atomic orbital electron populations 1.21768 0.93760 1.02752 1.01738 1.22920 0.94855 0.95288 0.86057 0.91930 1.23132 0.97980 0.99517 0.97988 1.22143 0.94935 1.00937 0.93190 0.90277 1.22131 0.99610 1.01094 0.98278 1.22714 0.84117 0.97054 0.93977 0.89779 1.20163 0.82851 0.86139 0.83573 1.90559 1.54075 1.54640 1.47469 1.43252 1.03586 1.24472 1.44397 1.19352 1.05921 0.90455 1.31578 0.89169 1.25397 0.99677 0.96083 0.94696 1.69920 1.31664 1.12582 1.34169 0.86267 0.81967 0.80342 0.78228 1.20103 1.20745 1.19043 1.21128 1.03100 0.88435 0.86675 1.21868 1.03407 0.93734 0.97399 1.23806 0.72790 0.91383 0.79469 1.90698 1.49840 1.30740 1.69006 1.84595 1.79204 1.43505 1.26305 1.89191 1.26938 1.74071 1.37039 0.92161 0.91655 0.91847 0.91111 0.90817 0.87333 0.94095 0.93688 0.91684 0.86962 0.91682 0.87650 0.88376 0.74159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.53 37.16 0.35 -1.51 16 2 C 0.07 1.05 3.92 -25.96 -0.10 0.95 16 3 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.15 -2.27 6.28 -25.17 -0.16 -2.43 16 5 C -0.09 -1.75 3.20 -89.06 -0.28 -2.04 16 6 H 0.08 1.68 7.86 -51.93 -0.41 1.27 16 7 C -0.15 -2.76 8.43 37.15 0.31 -2.45 16 8 C 0.08 1.72 2.60 -27.11 -0.07 1.65 16 9 H 0.08 1.69 6.52 -51.93 -0.34 1.35 16 10 C 0.48 11.83 6.83 -10.98 -0.07 11.75 16 11 O -0.58 -15.95 16.23 -13.18 -0.21 -16.17 16 12 N -0.44 -10.37 2.50 -114.82 -0.29 -10.66 16 13 C -0.35 -7.87 6.11 -14.93 -0.09 -7.96 16 14 H 0.09 1.98 6.81 -52.49 -0.36 1.62 16 15 C 0.05 1.13 3.71 -17.47 -0.06 1.06 16 16 N -0.85 -20.86 11.53 55.50 0.64 -20.22 16 17 Si 0.91 17.95 29.59 -169.99 -5.03 12.92 16 18 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 21 C 0.13 3.05 4.27 -4.05 -0.02 3.03 16 22 C -0.13 -2.45 6.13 -27.88 -0.17 -2.62 16 23 C 0.48 8.88 8.33 36.01 0.30 9.18 16 24 O -0.52 -10.97 16.74 -18.74 -0.31 -11.28 16 25 O -0.52 -7.54 13.42 -39.27 -0.53 -8.07 16 26 O -0.35 -7.35 10.64 -53.96 -0.57 -7.93 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.07 1.03 7.87 -51.93 -0.41 0.62 16 31 H 0.07 0.96 7.73 -51.93 -0.40 0.56 16 32 H 0.11 2.27 4.50 -51.93 -0.23 2.03 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 35 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 36 H 0.11 2.82 5.61 -51.93 -0.29 2.52 16 37 H 0.06 1.65 7.43 -51.93 -0.39 1.26 16 38 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 39 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 40 H 0.40 3.81 9.10 45.56 0.41 4.23 16 LS Contribution 328.09 15.07 4.94 4.94 Total: -1.00 -29.99 328.09 -6.35 -36.34 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -4.92 Total: 11.51 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -0.07 Total: 8.62 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 0.35 Total: -30.88 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -1.63 Total: -43.45 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.99 -6.35 -36.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594217745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.538 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds