Wall clock time and date at job start Tue Mar 31 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.32952 * 2 1 4 4 C 1.54475 * 110.46826 * 237.69022 * 2 1 3 5 5 C 1.54506 * 104.06694 * 217.13888 * 4 2 1 6 6 H 1.09002 * 110.51182 * 118.63955 * 5 4 2 7 7 C 1.52993 * 110.51448 * 241.35635 * 5 4 2 8 8 C 1.54479 * 104.06156 * 0.02562 * 5 4 2 9 9 H 1.08996 * 110.46779 * 265.09742 * 8 5 4 10 10 C 1.50698 * 110.37475 * 142.80424 * 8 5 4 11 11 O 1.21289 * 120.00370 * 258.83514 * 10 8 5 12 12 N 1.34783 * 119.99715 * 78.83160 * 10 8 5 13 13 C 1.37102 * 119.99903 * 5.00209 * 12 10 8 14 14 H 1.07997 * 120.00480 * 40.65070 * 13 12 10 15 15 C 1.38952 * 119.99843 * 220.66123 * 13 12 10 16 16 N 1.31413 * 119.99767 * 18.98676 * 15 13 12 17 17 Si 1.86792 * 120.00158 * 198.99664 * 15 13 12 18 18 H 1.48507 * 109.47391 * 89.99186 * 17 15 13 19 19 H 1.48497 * 109.47260 * 209.99696 * 17 15 13 20 20 H 1.48508 * 109.46875 * 329.99690 * 17 15 13 21 21 C 1.46493 * 119.99828 * 184.99388 * 12 10 8 22 22 C 1.52995 * 109.47517 * 269.26189 * 21 12 10 23 23 C 1.50704 * 109.47171 * 180.02562 * 22 21 12 24 24 O 1.20818 * 119.99886 * 0.02562 * 23 22 21 25 25 O 1.34234 * 119.99715 * 180.02562 * 23 22 21 26 26 O 1.44426 * 110.37595 * 122.25164 * 2 1 3 27 27 H 1.09000 * 109.47238 * 299.19524 * 1 2 3 28 28 H 1.08997 * 109.47123 * 59.20165 * 1 2 3 29 29 H 1.09007 * 109.46768 * 179.20208 * 1 2 3 30 30 H 1.09002 * 110.51117 * 335.78554 * 4 2 1 31 31 H 1.09000 * 110.51576 * 98.49382 * 4 2 1 32 32 H 1.09005 * 109.47181 * 181.59081 * 7 5 4 33 33 H 1.09004 * 109.47357 * 301.58763 * 7 5 4 34 34 H 1.08996 * 109.47161 * 61.59170 * 7 5 4 35 35 H 0.97003 * 119.99670 * 180.02562 * 16 15 13 36 36 H 1.09006 * 109.46900 * 149.26483 * 21 12 10 37 37 H 1.08998 * 109.47626 * 29.26849 * 21 12 10 38 38 H 1.09003 * 109.47416 * 300.00469 * 22 21 12 39 39 H 1.09006 * 109.46796 * 60.00230 * 22 21 12 40 40 H 0.96701 * 117.00149 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0702 -0.7735 -1.2232 5 6 3.3208 -1.5030 -0.6838 6 1 3.2003 -2.5829 -0.7708 7 6 4.5744 -1.0403 -1.4288 8 6 3.3880 -1.0845 0.8017 9 1 4.0518 -0.2291 0.9271 10 6 3.8545 -2.2384 1.6514 11 8 3.0511 -2.8865 2.2882 12 7 5.1647 -2.5502 1.7036 13 6 6.0841 -1.7570 1.0670 14 1 5.9843 -0.6821 1.0991 15 6 7.1442 -2.3360 0.3802 16 7 7.0812 -3.5974 0.0172 17 14 8.6589 -1.3215 -0.0268 18 1 9.6410 -1.4316 1.0817 19 1 9.2705 -1.8267 -1.2821 20 1 8.2693 0.1007 -0.2034 21 6 5.6065 -3.7366 2.4407 22 6 5.9195 -3.3509 3.8877 23 6 6.3745 -4.5713 4.6458 24 8 6.4419 -5.6398 4.0860 25 8 6.7049 -4.4711 5.9430 26 8 2.0329 -0.7225 1.1450 27 1 -0.3634 0.5013 0.8971 28 1 -0.3633 0.5262 -0.8827 29 1 -0.3633 -1.0276 -0.0143 30 1 1.3314 -1.4927 -1.5769 31 1 2.3450 -0.0833 -2.0207 32 1 5.4412 -1.5853 -1.0549 33 1 4.4558 -1.2340 -2.4949 34 1 4.7195 0.0278 -1.2674 35 1 7.8215 -4.0017 -0.4618 36 1 6.5022 -4.1434 1.9712 37 1 4.8165 -4.4876 2.4276 38 1 6.7095 -2.5999 3.9008 39 1 5.0238 -2.9441 4.3572 40 1 6.9905 -5.2812 6.3871 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594217745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:49 Heat of formation + Delta-G solvation = -197.380134 kcal Electronic energy + Delta-G solvation = -24033.366408 eV Core-core repulsion = 20426.276919 eV Total energy + Delta-G solvation = -3607.089490 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.49086 -41.10701 -39.50121 -37.23527 -36.83455 -34.47155 -33.83060 -33.08573 -32.10639 -27.91127 -27.68440 -26.93989 -25.10094 -22.62150 -22.02699 -21.50073 -21.00665 -19.32125 -18.73597 -17.98417 -17.56125 -17.04975 -16.94050 -16.65785 -16.29896 -16.01316 -15.39282 -15.19658 -14.78272 -14.40777 -14.30037 -14.11252 -13.61365 -13.52137 -13.41509 -13.10092 -12.92944 -12.89589 -12.75548 -12.63180 -12.57507 -12.16913 -12.13866 -12.03014 -11.90324 -11.67473 -11.46903 -11.41638 -10.82974 -10.72118 -10.24305 -9.51638 -8.26692 -6.07724 1.17454 1.45407 1.53649 1.62490 1.84970 2.02476 2.35802 2.62691 3.06202 3.40629 3.68312 3.87431 3.98231 4.01830 4.10763 4.19057 4.30513 4.42758 4.49466 4.55062 4.61958 4.72510 4.79576 4.84528 4.93650 4.94703 5.00407 5.13629 5.22635 5.31189 5.32484 5.38505 5.50590 5.57896 5.78199 5.95312 6.00577 6.41878 6.98872 7.13080 7.51088 7.96035 8.75249 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014016 B = 0.006776 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.222928 B = 4131.499961 C = 5643.926565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.057 3.943 3 H 0.086 0.914 4 C -0.138 4.138 5 C -0.093 4.093 6 H 0.040 0.960 7 C -0.148 4.148 8 C 0.087 3.913 9 H 0.095 0.905 10 C 0.465 3.535 11 O -0.627 6.627 12 N -0.438 5.438 13 C -0.348 4.348 14 H 0.103 0.897 15 C 0.019 3.981 16 N -0.884 5.884 17 Si 0.967 3.033 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.248 1.248 21 C 0.134 3.866 22 C -0.117 4.117 23 C 0.495 3.505 24 O -0.550 6.550 25 O -0.507 6.507 26 O -0.386 6.386 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.272 0.728 36 H 0.095 0.905 37 H 0.031 0.969 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 8.147 -0.429 8.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.000 4.000 3 H 0.103 0.897 4 C -0.176 4.176 5 C -0.112 4.112 6 H 0.059 0.941 7 C -0.205 4.205 8 C 0.027 3.973 9 H 0.113 0.887 10 C 0.255 3.745 11 O -0.514 6.514 12 N -0.157 5.157 13 C -0.475 4.475 14 H 0.121 0.879 15 C -0.186 4.186 16 N -0.520 5.520 17 Si 0.791 3.209 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.171 1.171 21 C 0.010 3.990 22 C -0.156 4.156 23 C 0.339 3.661 24 O -0.441 6.441 25 O -0.320 6.320 26 O -0.305 6.305 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.050 0.950 38 H 0.139 0.861 39 H 0.116 0.884 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -2.196 7.703 -0.367 8.018 hybrid contribution 1.062 -0.843 0.073 1.358 sum -1.135 6.859 -0.294 6.959 Atomic orbital electron populations 1.21801 0.91830 1.02463 1.03559 1.23319 0.96488 0.95767 0.84428 0.89660 1.23115 0.96044 0.99788 0.98604 1.22103 0.97536 0.99134 0.92435 0.94087 1.22030 0.97570 1.01872 0.98999 1.22638 0.84704 0.95739 0.94231 0.88701 1.20940 0.82679 0.87166 0.83698 1.90509 1.55042 1.56486 1.49386 1.43468 1.03886 1.24185 1.44164 1.19626 1.05571 0.90823 1.31484 0.87908 1.26087 1.01753 0.96652 0.94079 1.70041 1.32400 1.14419 1.35127 0.85316 0.78361 0.79782 0.77449 1.20226 1.21299 1.17139 1.20921 1.00901 0.88027 0.89147 1.21620 1.04016 0.94741 0.95188 1.23371 0.72148 0.90141 0.80466 1.90698 1.51498 1.31741 1.70121 1.84507 1.78357 1.45132 1.24038 1.89167 1.26741 1.74975 1.39664 0.91979 0.88135 0.93259 0.90737 0.87521 0.90448 0.92270 0.91453 0.91822 0.88690 0.94998 0.86051 0.88358 0.71159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.53 71.98 0.69 -2.61 16 2 C 0.06 1.66 3.92 31.10 0.12 1.78 16 3 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.14 -3.89 6.28 31.61 0.20 -3.69 16 5 C -0.09 -3.45 3.20 -9.78 -0.03 -3.48 16 6 H 0.04 1.81 7.86 -2.39 -0.02 1.79 16 7 C -0.15 -5.02 8.43 71.98 0.61 -4.42 16 8 C 0.09 3.66 2.60 30.35 0.08 3.73 16 9 H 0.10 3.70 6.52 -2.39 -0.02 3.69 16 10 C 0.47 23.52 6.83 87.66 0.60 24.12 16 11 O -0.63 -36.02 16.23 14.85 0.24 -35.78 16 12 N -0.44 -21.41 2.50 -635.55 -1.59 -23.00 16 13 C -0.35 -15.81 6.11 84.04 0.51 -15.30 16 14 H 0.10 4.37 6.81 -2.91 -0.02 4.35 16 15 C 0.02 0.87 3.71 84.93 0.31 1.19 16 16 N -0.88 -44.45 11.53 21.66 0.25 -44.20 16 17 Si 0.97 35.83 29.59 68.60 2.03 37.86 16 18 H -0.28 -10.28 7.11 99.48 0.71 -9.58 16 19 H -0.29 -10.84 7.11 99.48 0.71 -10.14 16 20 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 21 C 0.13 6.56 4.27 86.38 0.37 6.92 16 22 C -0.12 -4.63 6.13 29.85 0.18 -4.45 16 23 C 0.50 18.10 8.33 71.24 0.59 18.70 16 24 O -0.55 -23.85 16.74 21.99 0.37 -23.48 16 25 O -0.51 -13.59 13.42 -51.45 -0.69 -14.28 16 26 O -0.39 -15.95 10.64 -131.07 -1.39 -17.34 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 1.29 8.13 -2.38 -0.02 1.27 16 30 H 0.07 2.04 7.87 -2.39 -0.02 2.02 16 31 H 0.11 2.32 7.73 -2.39 -0.02 2.30 16 32 H 0.08 3.17 4.50 -2.38 -0.01 3.16 16 33 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.07 1.96 8.05 -2.39 -0.02 1.94 16 35 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 36 H 0.10 4.98 5.61 -2.38 -0.01 4.97 16 37 H 0.03 1.72 7.43 -2.39 -0.02 1.70 16 38 H 0.12 4.39 8.14 -2.39 -0.02 4.37 16 39 H 0.10 3.90 8.14 -2.38 -0.02 3.89 16 40 H 0.43 7.06 9.10 -74.06 -0.67 6.39 16 Total: -1.00 -67.98 328.09 3.84 -64.14 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.39 Total: 33.59 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 4.23 Total: 22.50 kcal Atomic # 7 Polarization: -65.86 SS G_CDS: -1.34 Total: -67.20 kcal Atomic # 8 Polarization: -89.41 SS G_CDS: -1.48 Total: -90.89 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Total: -67.98 3.84 -64.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594217745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.241 kcal (2) G-P(sol) polarization free energy of solvation -67.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds