Wall clock time and date at job start Tue Mar 31 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.54619 * 2 1 4 4 C 1.54990 * 110.61922 * 237.12207 * 2 1 3 5 5 C 1.54816 * 102.09263 * 204.31733 * 4 2 1 6 6 H 1.09003 * 110.59776 * 262.14909 * 5 4 2 7 7 C 1.52994 * 110.48854 * 139.55504 * 5 4 2 8 8 C 1.54102 * 104.18433 * 20.87710 * 5 4 2 9 9 H 1.08995 * 109.87905 * 242.45247 * 8 5 4 10 10 C 1.50704 * 109.87128 * 121.45766 * 8 5 4 11 11 O 1.21287 * 120.00039 * 302.14505 * 10 8 5 12 12 N 1.34776 * 119.99789 * 122.15734 * 10 8 5 13 13 C 1.37097 * 119.99928 * 178.41019 * 12 10 8 14 14 H 1.08004 * 120.00152 * 215.52268 * 13 12 10 15 15 C 1.38953 * 119.99992 * 35.52516 * 13 12 10 16 16 N 1.31411 * 120.00168 * 23.12061 * 15 13 12 17 17 Si 1.86798 * 119.99977 * 203.12707 * 15 13 12 18 18 H 1.48497 * 109.47555 * 89.99767 * 17 15 13 19 19 H 1.48499 * 109.47079 * 209.99776 * 17 15 13 20 20 H 1.48499 * 109.47244 * 329.99360 * 17 15 13 21 21 C 1.46501 * 120.00121 * 358.40972 * 12 10 8 22 22 C 1.53000 * 109.47065 * 277.91416 * 21 12 10 23 23 C 1.50697 * 109.46738 * 186.10355 * 22 21 12 24 24 O 1.20825 * 120.00546 * 0.02562 * 23 22 21 25 25 O 1.34229 * 119.99565 * 180.02562 * 23 22 21 26 26 O 1.43738 * 107.42378 * 1.95882 * 8 5 4 27 27 H 1.08998 * 109.47117 * 182.87567 * 1 2 3 28 28 H 1.08994 * 109.47456 * 302.88303 * 1 2 3 29 29 H 1.09003 * 109.46882 * 62.88164 * 1 2 3 30 30 H 1.08999 * 110.91114 * 86.11812 * 4 2 1 31 31 H 1.08999 * 110.91144 * 322.51463 * 4 2 1 32 32 H 1.09001 * 109.47368 * 337.05854 * 7 5 4 33 33 H 1.09007 * 109.47282 * 97.05820 * 7 5 4 34 34 H 1.08994 * 109.47267 * 217.05837 * 7 5 4 35 35 H 0.96995 * 119.99905 * 184.97443 * 16 15 13 36 36 H 1.09005 * 109.47069 * 157.91157 * 21 12 10 37 37 H 1.09000 * 109.47061 * 37.91896 * 21 12 10 38 38 H 1.08997 * 109.47137 * 306.10365 * 22 21 12 39 39 H 1.08999 * 109.46890 * 66.10590 * 22 21 12 40 40 H 0.96705 * 117.00280 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0758 -0.7875 -1.2183 5 6 3.4811 -1.2121 -0.7268 6 1 4.2419 -0.5283 -1.1035 7 6 3.7896 -2.6463 -1.1611 8 6 3.3875 -1.1217 0.8087 9 1 4.0897 -0.3751 1.1795 10 6 3.6962 -2.4638 1.4206 11 8 3.0363 -3.4351 1.1169 12 7 4.7055 -2.5848 2.3055 13 6 4.9657 -3.7989 2.8869 14 1 5.3021 -3.8457 3.9121 15 6 4.7966 -4.9691 2.1570 16 7 4.8381 -4.9364 0.8439 17 14 4.5102 -6.5889 3.0423 18 1 3.0527 -6.7947 3.2387 19 1 5.0620 -7.7019 2.2288 20 1 5.1882 -6.5578 4.3631 21 6 5.5247 -1.4190 2.6462 22 6 6.5987 -1.2197 1.5749 23 6 7.5326 -0.1158 1.9993 24 8 7.3576 0.4529 3.0509 25 8 8.5590 0.2358 1.2090 26 8 2.0428 -0.7331 1.1357 27 1 -0.3633 -1.0263 0.0516 28 1 -0.3634 0.5579 0.8629 29 1 -0.3633 0.4685 -0.9147 30 1 2.1483 -0.1452 -2.0959 31 1 1.4566 -1.6600 -1.4266 32 1 2.8566 -3.1789 -1.3450 33 1 4.3845 -2.6294 -2.0743 34 1 4.3476 -3.1524 -0.3733 35 1 4.6487 -5.7386 0.3326 36 1 6.0015 -1.5800 3.6132 37 1 4.8923 -0.5326 2.6962 38 1 7.1623 -2.1441 1.4490 39 1 6.1246 -0.9516 0.6307 40 1 9.1313 0.9490 1.5237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594217746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:52 Heat of formation + Delta-G solvation = -170.467297 kcal Electronic energy + Delta-G solvation = -24524.628987 eV Core-core repulsion = 20918.706525 eV Total energy + Delta-G solvation = -3605.922461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.60962 -41.05561 -39.28664 -37.16575 -36.32963 -34.43566 -34.14469 -32.80075 -31.71808 -28.28728 -27.60699 -26.46988 -25.24251 -22.44292 -22.17649 -21.80958 -20.47441 -19.17848 -18.72701 -18.01492 -17.40387 -17.22435 -16.95953 -16.59901 -16.38791 -15.63630 -15.34165 -15.29771 -14.77650 -14.38372 -14.27539 -13.88407 -13.47829 -13.42525 -13.26026 -13.11344 -13.00246 -12.78429 -12.55706 -12.49383 -12.42562 -12.22404 -12.09509 -11.97071 -11.83619 -11.62032 -11.58815 -11.45226 -10.93632 -10.60876 -9.74111 -9.09227 -8.13428 -5.88441 1.23424 1.42052 1.49986 1.53135 2.02439 2.19603 2.42426 2.95650 3.31895 3.41354 3.58222 3.81583 3.86485 3.98082 4.04815 4.14768 4.27043 4.40341 4.45650 4.50650 4.57589 4.63336 4.74158 4.81143 4.84400 4.96141 5.01019 5.09381 5.12667 5.18477 5.30837 5.33990 5.51808 5.64318 5.98075 6.03028 6.24910 7.01901 7.05679 7.21391 7.69085 8.36633 8.88820 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.010173 B = 0.009081 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.812813 B = 3082.472418 C = 4983.162742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.060 3.940 3 H 0.094 0.906 4 C -0.135 4.135 5 C -0.107 4.107 6 H 0.108 0.892 7 C -0.161 4.161 8 C 0.065 3.935 9 H 0.087 0.913 10 C 0.466 3.534 11 O -0.553 6.553 12 N -0.463 5.463 13 C -0.367 4.367 14 H 0.083 0.917 15 C 0.028 3.972 16 N -0.832 5.832 17 Si 0.958 3.042 18 H -0.298 1.298 19 H -0.283 1.283 20 H -0.260 1.260 21 C 0.119 3.881 22 C -0.123 4.123 23 C 0.500 3.500 24 O -0.545 6.545 25 O -0.510 6.510 26 O -0.389 6.389 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.026 0.974 33 H 0.046 0.954 34 H 0.101 0.899 35 H 0.258 0.742 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 12.812 -5.379 14.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.003 3.997 3 H 0.111 0.889 4 C -0.172 4.172 5 C -0.126 4.126 6 H 0.126 0.874 7 C -0.218 4.218 8 C 0.004 3.996 9 H 0.104 0.896 10 C 0.254 3.746 11 O -0.432 6.432 12 N -0.186 5.186 13 C -0.494 4.494 14 H 0.100 0.900 15 C -0.180 4.180 16 N -0.467 5.467 17 Si 0.784 3.216 18 H -0.225 1.225 19 H -0.209 1.209 20 H -0.184 1.184 21 C -0.005 4.005 22 C -0.162 4.162 23 C 0.343 3.657 24 O -0.436 6.436 25 O -0.323 6.323 26 O -0.308 6.308 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 1.143 11.992 -5.348 13.180 hybrid contribution 0.288 -0.734 0.491 0.929 sum 1.430 11.258 -4.857 12.344 Atomic orbital electron populations 1.21776 0.92163 1.02121 1.03748 1.23516 0.96218 0.95659 0.84295 0.88869 1.23315 0.94399 1.00447 0.99062 1.22439 0.99331 0.98751 0.92097 0.87365 1.22380 1.01311 0.95328 1.02787 1.23011 0.85670 0.94446 0.96439 0.89584 1.20076 0.81857 0.89610 0.83079 1.90523 1.50851 1.40748 1.61050 1.43611 1.26517 1.08105 1.40359 1.19353 1.50782 0.83194 0.96072 0.89970 1.25652 0.95861 1.01119 0.95360 1.69820 1.40956 1.29684 1.06265 0.85490 0.77357 0.79572 0.79137 1.22525 1.20872 1.18382 1.21383 0.92123 0.89428 0.97542 1.21798 0.96021 0.96501 1.01889 1.23243 0.79474 0.82102 0.80878 1.90699 1.73039 1.54547 1.25323 1.84528 1.39900 1.56402 1.51512 1.88927 1.27551 1.74103 1.40260 0.93902 0.91635 0.88126 0.86976 0.92279 0.95519 0.93539 0.88092 0.93247 0.90637 0.90514 0.87772 0.87209 0.71043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.66 71.98 0.70 -2.71 16 2 C 0.06 1.70 3.97 31.27 0.12 1.82 16 3 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 4 C -0.13 -3.81 6.14 31.89 0.20 -3.62 16 5 C -0.11 -3.61 3.64 -9.80 -0.04 -3.65 16 6 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 7 C -0.16 -6.68 8.30 71.98 0.60 -6.09 16 8 C 0.07 2.58 3.03 30.22 0.09 2.67 16 9 H 0.09 2.98 5.02 -2.39 -0.01 2.97 16 10 C 0.47 23.35 4.57 87.66 0.40 23.75 16 11 O -0.55 -32.58 11.90 1.10 0.01 -32.57 16 12 N -0.46 -22.67 2.58 -635.52 -1.64 -24.31 16 13 C -0.37 -19.86 9.31 84.04 0.78 -19.08 16 14 H 0.08 4.33 7.93 -2.91 -0.02 4.30 16 15 C 0.03 1.57 4.25 84.93 0.36 1.93 16 16 N -0.83 -47.03 9.61 21.66 0.21 -46.83 16 17 Si 0.96 45.21 29.61 68.60 2.03 47.25 16 18 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 21 C 0.12 4.61 4.37 86.38 0.38 4.99 16 22 C -0.12 -3.99 5.88 29.85 0.18 -3.81 16 23 C 0.50 13.96 8.33 71.24 0.59 14.56 16 24 O -0.55 -17.88 16.65 21.97 0.37 -17.51 16 25 O -0.51 -10.58 13.42 -51.41 -0.69 -11.27 16 26 O -0.39 -15.58 10.90 -144.83 -1.58 -17.16 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.06 1.92 7.30 -2.39 -0.02 1.90 16 32 H 0.03 1.19 7.18 -2.39 -0.02 1.17 16 33 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.10 5.01 3.33 -2.39 -0.01 5.00 16 35 H 0.26 14.38 8.32 -92.71 -0.77 13.61 16 36 H 0.08 2.96 7.75 -2.38 -0.02 2.95 16 37 H 0.08 2.76 6.37 -2.39 -0.02 2.74 16 38 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 39 H 0.11 3.30 7.24 -2.39 -0.02 3.28 16 40 H 0.43 4.58 9.10 -74.05 -0.67 3.91 16 Total: -1.00 -73.50 322.12 3.46 -70.04 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.39 Total: 21.60 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 4.36 Total: 10.76 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -1.43 Total: -71.14 kcal Atomic # 8 Polarization: -76.62 SS G_CDS: -1.89 Total: -78.51 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.25 kcal Total: -73.50 3.46 -70.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594217746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.429 kcal (2) G-P(sol) polarization free energy of solvation -73.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds