Wall clock time and date at job start Tue Mar 31 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 110.55338 * 2 1 4 4 C 1.54995 * 110.61669 * 237.12130 * 2 1 3 5 5 C 1.54812 * 102.09512 * 204.47638 * 4 2 1 6 6 H 1.09001 * 110.48992 * 139.55156 * 5 4 2 7 7 C 1.52994 * 110.60126 * 262.14994 * 5 4 2 8 8 C 1.54102 * 104.18507 * 20.88060 * 5 4 2 9 9 H 1.09000 * 109.88325 * 121.60198 * 8 5 4 10 10 C 1.50699 * 109.88055 * 242.60823 * 8 5 4 11 11 O 1.21293 * 120.00087 * 104.70935 * 10 8 5 12 12 N 1.34783 * 119.99702 * 284.71216 * 10 8 5 13 13 C 1.37098 * 119.99772 * 184.25017 * 12 10 8 14 14 H 1.08006 * 120.00048 * 40.18049 * 13 12 10 15 15 C 1.38950 * 120.00326 * 220.17789 * 13 12 10 16 16 N 1.31416 * 119.99509 * 20.53658 * 15 13 12 17 17 Si 1.86792 * 120.00281 * 200.53373 * 15 13 12 18 18 H 1.48499 * 109.47149 * 90.00472 * 17 15 13 19 19 H 1.48507 * 109.47046 * 210.00005 * 17 15 13 20 20 H 1.48497 * 109.47225 * 330.00054 * 17 15 13 21 21 C 1.46491 * 120.00175 * 4.25016 * 12 10 8 22 22 C 1.53005 * 109.47190 * 265.25554 * 21 12 10 23 23 C 1.50703 * 109.47228 * 179.97438 * 22 21 12 24 24 O 1.20827 * 119.99908 * 0.02562 * 23 22 21 25 25 O 1.34224 * 120.00034 * 179.97438 * 23 22 21 26 26 O 1.43748 * 107.29582 * 2.03140 * 8 5 4 27 27 H 1.09000 * 109.47133 * 182.87598 * 1 2 3 28 28 H 1.08997 * 109.46733 * 302.87950 * 1 2 3 29 29 H 1.09001 * 109.46739 * 62.87708 * 1 2 3 30 30 H 1.09001 * 110.90892 * 86.27763 * 4 2 1 31 31 H 1.09007 * 110.90690 * 322.67478 * 4 2 1 32 32 H 1.09007 * 109.47229 * 179.82017 * 7 5 4 33 33 H 1.08994 * 109.47362 * 299.82304 * 7 5 4 34 34 H 1.08998 * 109.47473 * 59.82804 * 7 5 4 35 35 H 0.96998 * 120.00182 * 184.98387 * 16 15 13 36 36 H 1.08997 * 109.47345 * 25.25050 * 21 12 10 37 37 H 1.09003 * 109.47649 * 145.25694 * 21 12 10 38 38 H 1.09003 * 109.46927 * 299.99713 * 22 21 12 39 39 H 1.08994 * 109.47152 * 59.99997 * 22 21 12 40 40 H 0.96698 * 117.00507 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0205 0.0000 4 6 2.0758 -0.7875 -1.2183 5 6 3.4795 -1.2157 -0.7254 6 1 3.6974 -2.2377 -1.0355 7 6 4.5502 -0.2579 -1.2517 8 6 3.3839 -1.1267 0.8101 9 1 3.6070 -2.0977 1.2523 10 6 4.3537 -0.0945 1.3249 11 8 3.9483 0.9869 1.6957 12 7 5.6716 -0.3729 1.3732 13 6 6.5436 0.5316 1.9219 14 1 6.2685 1.0737 2.8147 15 6 7.7812 0.7509 1.3296 16 7 7.9730 0.4291 0.0700 17 14 9.1723 1.5031 2.3237 18 1 9.9543 0.4229 2.9769 19 1 10.0600 2.2813 1.4227 20 1 8.6086 2.4032 3.3616 21 6 6.1722 -1.6419 0.8395 22 6 6.2811 -2.6643 1.9726 23 6 6.7956 -3.9700 1.4234 24 8 7.0494 -4.0723 0.2465 25 8 6.9726 -5.0191 2.2418 26 8 2.0384 -0.7371 1.1327 27 1 -0.3633 -1.0264 0.0516 28 1 -0.3633 0.5579 0.8630 29 1 -0.3633 0.4685 -0.9147 30 1 2.1509 -0.1445 -2.0952 31 1 1.4549 -1.6585 -1.4284 32 1 5.5293 -0.5741 -0.8916 33 1 4.5431 -0.2685 -2.3416 34 1 4.3412 0.7512 -0.8968 35 1 8.8555 0.5144 -0.3235 36 1 5.4842 -2.0134 0.0800 37 1 7.1551 -1.4866 0.3946 38 1 6.9692 -2.2929 2.7321 39 1 5.2983 -2.8197 2.4175 40 1 7.3049 -5.8353 1.8437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594217747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:56 Heat of formation + Delta-G solvation = -165.693512 kcal Electronic energy + Delta-G solvation = -24530.377944 eV Core-core repulsion = 20924.662489 eV Total energy + Delta-G solvation = -3605.715455 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.32719 -39.79178 -37.61005 -35.94878 -35.00581 -33.13658 -32.18944 -31.52071 -30.26575 -26.84618 -26.28552 -24.89859 -23.79312 -21.50965 -20.74013 -20.24128 -18.74609 -17.91521 -16.86574 -16.60766 -16.11845 -15.75764 -15.57509 -15.25372 -14.84947 -14.30612 -13.90811 -13.46085 -13.37859 -12.92072 -12.89210 -12.61809 -12.25198 -12.08434 -11.89782 -11.80990 -11.49261 -11.31073 -11.23342 -11.09074 -10.93782 -10.67174 -10.42794 -10.40517 -10.34419 -10.28482 -10.18371 -10.01323 -9.68182 -9.01372 -8.13045 -7.53888 -6.33599 -4.06775 2.50773 3.15220 3.24943 3.27239 3.31307 3.76860 4.08137 4.32244 4.78090 4.83241 4.96412 4.99516 5.32590 5.34067 5.43118 5.53320 5.55954 5.64914 5.72895 5.85242 5.88804 5.95150 6.00592 6.04826 6.09509 6.21486 6.28102 6.43119 6.44591 6.49379 6.70218 6.72453 7.11373 7.16658 7.28884 7.55644 8.14363 8.23418 8.45489 9.14473 9.30970 9.93714 10.67750 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013502 B = 0.007380 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.263919 B = 3793.288423 C = 5047.945061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.072 3.928 3 H 0.076 0.924 4 C -0.145 4.145 5 C -0.112 4.112 6 H 0.083 0.917 7 C -0.164 4.164 8 C 0.063 3.937 9 H 0.097 0.903 10 C 0.459 3.541 11 O -0.560 6.560 12 N -0.442 5.442 13 C -0.312 4.312 14 H 0.090 0.910 15 C 0.041 3.959 16 N -0.861 5.861 17 Si 0.913 3.087 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.104 3.896 22 C -0.133 4.133 23 C 0.482 3.518 24 O -0.514 6.514 25 O -0.523 6.523 26 O -0.352 6.352 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.268 0.732 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.672 -8.439 -1.590 10.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.014 3.986 3 H 0.094 0.906 4 C -0.183 4.183 5 C -0.131 4.131 6 H 0.101 0.899 7 C -0.221 4.221 8 C 0.002 3.998 9 H 0.114 0.886 10 C 0.247 3.753 11 O -0.441 6.441 12 N -0.164 5.164 13 C -0.440 4.440 14 H 0.107 0.893 15 C -0.164 4.164 16 N -0.498 5.498 17 Si 0.739 3.261 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.193 1.193 21 C -0.020 4.020 22 C -0.172 4.172 23 C 0.324 3.676 24 O -0.402 6.402 25 O -0.335 6.335 26 O -0.270 6.270 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.113 0.887 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -5.953 -7.488 -1.516 9.685 hybrid contribution 1.228 -0.362 -0.039 1.281 sum -4.724 -7.849 -1.555 9.293 Atomic orbital electron populations 1.21741 0.93737 1.02360 1.02077 1.23112 0.94321 0.96383 0.84752 0.90572 1.23252 0.95874 1.00384 0.98778 1.22415 0.96196 1.01029 0.93454 0.89878 1.22313 1.00403 0.99510 0.99878 1.22821 0.84037 0.97615 0.95352 0.88552 1.20756 0.83990 0.88479 0.82065 1.90535 1.77745 1.24752 1.51043 1.43403 1.04399 1.14233 1.54354 1.19416 0.96042 1.20126 1.08374 0.89267 1.25368 0.99926 0.96642 0.94470 1.69930 1.23130 1.46899 1.09884 0.86145 0.80889 0.79267 0.79787 1.20397 1.21018 1.19317 1.21600 1.05049 0.82756 0.92618 1.22005 1.03232 0.88831 1.03101 1.23784 0.73832 0.85516 0.84486 1.90708 1.47600 1.83793 1.18100 1.84592 1.79304 1.23777 1.45782 1.88846 1.25415 1.72989 1.39756 0.92170 0.92003 0.91480 0.90315 0.90890 0.88005 0.93402 0.92023 0.92187 0.91244 0.86347 0.86911 0.88723 0.73982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.65 37.16 0.36 -1.49 16 2 C 0.07 1.21 3.76 -25.68 -0.10 1.11 16 3 H 0.08 1.46 7.88 -51.93 -0.41 1.06 16 4 C -0.15 -2.14 6.15 -24.72 -0.15 -2.30 16 5 C -0.11 -1.91 2.59 -89.09 -0.23 -2.14 16 6 H 0.08 1.27 7.86 -51.93 -0.41 0.86 16 7 C -0.16 -3.22 7.74 37.15 0.29 -2.93 16 8 C 0.06 1.24 3.01 -27.31 -0.08 1.16 16 9 H 0.10 1.69 6.81 -51.93 -0.35 1.34 16 10 C 0.46 10.98 4.88 -10.98 -0.05 10.93 16 11 O -0.56 -15.62 16.07 -13.67 -0.22 -15.84 16 12 N -0.44 -10.49 1.92 -114.81 -0.22 -10.71 16 13 C -0.31 -8.19 8.80 -14.93 -0.13 -8.32 16 14 H 0.09 2.47 7.85 -52.48 -0.41 2.06 16 15 C 0.04 1.04 5.00 -17.47 -0.09 0.95 16 16 N -0.86 -22.19 11.53 55.50 0.64 -21.55 16 17 Si 0.91 19.98 29.60 -169.99 -5.03 14.94 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 C 0.10 2.15 2.30 -4.04 -0.01 2.14 16 22 C -0.13 -2.27 6.05 -27.88 -0.17 -2.44 16 23 C 0.48 7.64 8.33 36.01 0.30 7.94 16 24 O -0.51 -9.52 16.74 -18.75 -0.31 -9.83 16 25 O -0.52 -6.48 13.42 -39.24 -0.53 -7.01 16 26 O -0.35 -6.99 10.52 -54.45 -0.57 -7.57 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.07 7.87 -51.93 -0.41 0.66 16 31 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 32 H 0.10 2.24 4.43 -51.92 -0.23 2.01 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.39 7.21 -51.93 -0.37 1.01 16 35 H 0.27 6.60 8.32 -40.82 -0.34 6.26 16 36 H 0.07 1.35 4.28 -51.93 -0.22 1.13 16 37 H 0.12 2.77 5.61 -51.93 -0.29 2.48 16 38 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 39 H 0.09 1.46 7.35 -51.93 -0.38 1.08 16 40 H 0.40 3.11 9.10 45.56 0.41 3.52 16 LS Contribution 322.72 15.07 4.86 4.86 Total: -1.00 -31.92 322.72 -6.19 -38.12 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -4.74 Total: 9.97 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -0.07 Total: 4.61 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.42 Total: -32.26 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -1.63 Total: -40.25 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.94 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.92 -6.19 -38.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594217747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.577 kcal (2) G-P(sol) polarization free energy of solvation -31.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds