Wall clock time and date at job start Tue Mar 31 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 110.55338 * 2 1 4 4 C 1.54995 * 110.61669 * 237.12130 * 2 1 3 5 5 C 1.54812 * 102.09512 * 204.47638 * 4 2 1 6 6 H 1.09001 * 110.48992 * 139.55156 * 5 4 2 7 7 C 1.52994 * 110.60126 * 262.14994 * 5 4 2 8 8 C 1.54102 * 104.18507 * 20.88060 * 5 4 2 9 9 H 1.09000 * 109.88325 * 121.60198 * 8 5 4 10 10 C 1.50699 * 109.88055 * 242.60823 * 8 5 4 11 11 O 1.21293 * 120.00087 * 104.70935 * 10 8 5 12 12 N 1.34783 * 119.99702 * 284.71216 * 10 8 5 13 13 C 1.37098 * 119.99772 * 184.25017 * 12 10 8 14 14 H 1.08006 * 120.00048 * 40.18049 * 13 12 10 15 15 C 1.38950 * 120.00326 * 220.17789 * 13 12 10 16 16 N 1.31416 * 119.99509 * 20.53658 * 15 13 12 17 17 Si 1.86792 * 120.00281 * 200.53373 * 15 13 12 18 18 H 1.48499 * 109.47149 * 90.00472 * 17 15 13 19 19 H 1.48507 * 109.47046 * 210.00005 * 17 15 13 20 20 H 1.48497 * 109.47225 * 330.00054 * 17 15 13 21 21 C 1.46491 * 120.00175 * 4.25016 * 12 10 8 22 22 C 1.53005 * 109.47190 * 265.25554 * 21 12 10 23 23 C 1.50703 * 109.47228 * 179.97438 * 22 21 12 24 24 O 1.20827 * 119.99908 * 0.02562 * 23 22 21 25 25 O 1.34224 * 120.00034 * 179.97438 * 23 22 21 26 26 O 1.43748 * 107.29582 * 2.03140 * 8 5 4 27 27 H 1.09000 * 109.47133 * 182.87598 * 1 2 3 28 28 H 1.08997 * 109.46733 * 302.87950 * 1 2 3 29 29 H 1.09001 * 109.46739 * 62.87708 * 1 2 3 30 30 H 1.09001 * 110.90892 * 86.27763 * 4 2 1 31 31 H 1.09007 * 110.90690 * 322.67478 * 4 2 1 32 32 H 1.09007 * 109.47229 * 179.82017 * 7 5 4 33 33 H 1.08994 * 109.47362 * 299.82304 * 7 5 4 34 34 H 1.08998 * 109.47473 * 59.82804 * 7 5 4 35 35 H 0.96998 * 120.00182 * 184.98387 * 16 15 13 36 36 H 1.08997 * 109.47345 * 25.25050 * 21 12 10 37 37 H 1.09003 * 109.47649 * 145.25694 * 21 12 10 38 38 H 1.09003 * 109.46927 * 299.99713 * 22 21 12 39 39 H 1.08994 * 109.47152 * 59.99997 * 22 21 12 40 40 H 0.96698 * 117.00507 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0205 0.0000 4 6 2.0758 -0.7875 -1.2183 5 6 3.4795 -1.2157 -0.7254 6 1 3.6974 -2.2377 -1.0355 7 6 4.5502 -0.2579 -1.2517 8 6 3.3839 -1.1267 0.8101 9 1 3.6070 -2.0977 1.2523 10 6 4.3537 -0.0945 1.3249 11 8 3.9483 0.9869 1.6957 12 7 5.6716 -0.3729 1.3732 13 6 6.5436 0.5316 1.9219 14 1 6.2685 1.0737 2.8147 15 6 7.7812 0.7509 1.3296 16 7 7.9730 0.4291 0.0700 17 14 9.1723 1.5031 2.3237 18 1 9.9543 0.4229 2.9769 19 1 10.0600 2.2813 1.4227 20 1 8.6086 2.4032 3.3616 21 6 6.1722 -1.6419 0.8395 22 6 6.2811 -2.6643 1.9726 23 6 6.7956 -3.9700 1.4234 24 8 7.0494 -4.0723 0.2465 25 8 6.9726 -5.0191 2.2418 26 8 2.0384 -0.7371 1.1327 27 1 -0.3633 -1.0264 0.0516 28 1 -0.3633 0.5579 0.8630 29 1 -0.3633 0.4685 -0.9147 30 1 2.1509 -0.1445 -2.0952 31 1 1.4549 -1.6585 -1.4284 32 1 5.5293 -0.5741 -0.8916 33 1 4.5431 -0.2685 -2.3416 34 1 4.3412 0.7512 -0.8968 35 1 8.8555 0.5144 -0.3235 36 1 5.4842 -2.0134 0.0800 37 1 7.1551 -1.4866 0.3946 38 1 6.9692 -2.2929 2.7321 39 1 5.2983 -2.8197 2.4175 40 1 7.3049 -5.8353 1.8437 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594217747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:56 Heat of formation + Delta-G solvation = -187.175117 kcal Electronic energy + Delta-G solvation = -24531.309456 eV Core-core repulsion = 20924.662489 eV Total energy + Delta-G solvation = -3606.646967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.86832 -41.08231 -39.25603 -37.24329 -36.76249 -34.72547 -33.87248 -32.87187 -31.91049 -28.38336 -27.78241 -26.53967 -25.40632 -22.96438 -22.06524 -21.60905 -20.46096 -19.25335 -18.54838 -18.18170 -17.64240 -17.09755 -16.90201 -16.83881 -16.58635 -15.99779 -15.56419 -15.01782 -14.75447 -14.39864 -14.36266 -14.00138 -13.68667 -13.56242 -13.38034 -13.17187 -12.97076 -12.84666 -12.75936 -12.55953 -12.47809 -12.33664 -12.14234 -11.97583 -11.83722 -11.80871 -11.56952 -11.42172 -11.14104 -10.92823 -9.95856 -9.46345 -8.28777 -6.09793 1.25381 1.38222 1.43461 1.53629 1.91888 2.11579 2.33343 2.82915 3.01016 3.16479 3.49412 3.67731 3.87368 3.99273 4.03284 4.11662 4.20597 4.37417 4.42223 4.51709 4.56583 4.58830 4.69690 4.80364 4.82449 4.90108 4.96580 5.02865 5.17087 5.20998 5.30100 5.36725 5.48188 5.56347 5.66326 5.87705 6.24309 6.54347 7.06787 7.20267 7.41276 8.04648 8.70165 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013502 B = 0.007380 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.263919 B = 3793.288423 C = 5047.945061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.037 0.963 4 C -0.132 4.132 5 C -0.109 4.109 6 H 0.114 0.886 7 C -0.156 4.156 8 C 0.067 3.933 9 H 0.120 0.880 10 C 0.447 3.553 11 O -0.616 6.616 12 N -0.445 5.445 13 C -0.340 4.340 14 H 0.062 0.938 15 C 0.011 3.989 16 N -0.877 5.877 17 Si 0.972 3.028 18 H -0.261 1.261 19 H -0.282 1.282 20 H -0.276 1.276 21 C 0.111 3.889 22 C -0.131 4.131 23 C 0.497 3.503 24 O -0.543 6.543 25 O -0.509 6.509 26 O -0.370 6.370 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.020 0.980 35 H 0.271 0.729 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.179 -10.875 -2.304 12.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.002 3.998 3 H 0.055 0.945 4 C -0.169 4.169 5 C -0.127 4.127 6 H 0.133 0.867 7 C -0.213 4.213 8 C 0.005 3.995 9 H 0.138 0.862 10 C 0.237 3.763 11 O -0.501 6.501 12 N -0.165 5.165 13 C -0.468 4.468 14 H 0.080 0.920 15 C -0.193 4.193 16 N -0.514 5.514 17 Si 0.796 3.204 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.201 1.201 21 C -0.012 4.012 22 C -0.169 4.169 23 C 0.340 3.660 24 O -0.433 6.433 25 O -0.323 6.323 26 O -0.288 6.288 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.133 0.867 40 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -6.440 -9.990 -2.230 12.093 hybrid contribution 1.409 0.416 0.189 1.481 sum -5.031 -9.574 -2.041 11.006 Atomic orbital electron populations 1.21733 0.90540 1.03657 1.03144 1.23310 0.96798 0.94567 0.85098 0.94518 1.23257 0.94313 1.01478 0.97893 1.22465 0.96877 1.01904 0.91498 0.86746 1.22174 1.00087 0.97792 1.01238 1.22850 0.82942 0.96612 0.97087 0.86215 1.21634 0.84685 0.88840 0.81125 1.90484 1.78767 1.27347 1.53525 1.43538 1.04306 1.15031 1.53613 1.19328 0.97389 1.21759 1.08330 0.92015 1.26015 1.01311 0.96709 0.95223 1.70008 1.23637 1.47083 1.10655 0.85260 0.78141 0.78740 0.78261 1.18592 1.20718 1.20144 1.21489 1.03558 0.82210 0.93982 1.21793 1.04529 0.89076 1.01532 1.23231 0.73152 0.85699 0.83919 1.90712 1.48976 1.84359 1.19284 1.84510 1.78756 1.24178 1.44878 1.88833 1.25187 1.73108 1.41666 0.90432 0.92848 0.88816 0.89063 0.87360 0.90504 0.91080 0.96126 0.91879 0.89979 0.89078 0.87370 0.86738 0.71100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.65 71.98 0.69 -2.49 16 2 C 0.06 1.96 3.76 31.28 0.12 2.08 16 3 H 0.04 1.48 7.88 -2.39 -0.02 1.46 16 4 C -0.13 -3.52 6.15 31.90 0.20 -3.33 16 5 C -0.11 -3.51 2.59 -9.80 -0.03 -3.53 16 6 H 0.11 3.05 7.86 -2.39 -0.02 3.03 16 7 C -0.16 -6.13 7.74 71.98 0.56 -5.57 16 8 C 0.07 2.56 3.01 30.22 0.09 2.65 16 9 H 0.12 3.98 6.81 -2.39 -0.02 3.96 16 10 C 0.45 22.19 4.88 87.66 0.43 22.62 16 11 O -0.62 -36.53 16.07 15.31 0.25 -36.29 16 12 N -0.44 -21.79 1.92 -635.53 -1.22 -23.01 16 13 C -0.34 -18.65 8.80 84.04 0.74 -17.91 16 14 H 0.06 3.65 7.85 -2.91 -0.02 3.63 16 15 C 0.01 0.59 5.00 84.93 0.42 1.01 16 16 N -0.88 -46.11 11.53 21.66 0.25 -45.86 16 17 Si 0.97 41.63 29.60 68.60 2.03 43.66 16 18 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 21 C 0.11 4.60 2.30 86.38 0.20 4.80 16 22 C -0.13 -4.32 6.05 29.85 0.18 -4.14 16 23 C 0.50 14.66 8.33 71.24 0.59 15.26 16 24 O -0.54 -19.12 16.74 21.96 0.37 -18.75 16 25 O -0.51 -10.96 13.42 -51.36 -0.69 -11.65 16 26 O -0.37 -14.52 10.52 -130.60 -1.37 -15.89 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.09 2.22 7.87 -2.39 -0.02 2.20 16 31 H 0.11 2.19 8.06 -2.38 -0.02 2.17 16 32 H 0.08 3.43 4.43 -2.38 -0.01 3.42 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.02 0.94 7.21 -2.39 -0.02 0.92 16 35 H 0.27 13.50 8.32 -92.71 -0.77 12.73 16 36 H 0.08 3.13 4.28 -2.39 -0.01 3.12 16 37 H 0.09 4.33 5.61 -2.39 -0.01 4.32 16 38 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 39 H 0.11 3.32 7.35 -2.39 -0.02 3.30 16 40 H 0.43 5.00 9.10 -74.06 -0.67 4.33 16 Total: -1.00 -73.63 322.72 4.20 -69.43 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.39 Total: 26.93 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 4.20 Total: 11.43 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -0.97 Total: -68.87 kcal Atomic # 8 Polarization: -81.13 SS G_CDS: -1.45 Total: -82.58 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -73.63 4.20 -69.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594217747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.750 kcal (2) G-P(sol) polarization free energy of solvation -73.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds