Wall clock time and date at job start Tue Mar 31 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.67778 * 2 1 4 4 C 1.54994 * 110.62063 * 237.02818 * 2 1 3 5 5 C 1.54814 * 102.09287 * 204.47508 * 4 2 1 6 6 H 1.08997 * 110.48727 * 262.20646 * 5 4 2 7 7 C 1.52999 * 110.59774 * 139.61511 * 5 4 2 8 8 C 1.54099 * 104.18575 * 20.88652 * 5 4 2 9 9 H 1.08998 * 109.87930 * 121.45719 * 8 5 4 10 10 C 1.50710 * 109.99958 * 242.53177 * 8 5 4 11 11 O 1.21288 * 119.99889 * 108.81327 * 10 8 5 12 12 N 1.34770 * 119.99885 * 288.81556 * 10 8 5 13 13 C 1.37100 * 120.00119 * 4.72455 * 12 10 8 14 14 H 1.07998 * 120.00238 * 317.22493 * 13 12 10 15 15 C 1.38951 * 119.99921 * 137.22751 * 13 12 10 16 16 N 1.31416 * 119.99658 * 342.35088 * 15 13 12 17 17 Si 1.86793 * 120.00048 * 162.35039 * 15 13 12 18 18 H 1.48498 * 109.47213 * 90.00235 * 17 15 13 19 19 H 1.48502 * 109.47033 * 209.99672 * 17 15 13 20 20 H 1.48503 * 109.47359 * 330.00036 * 17 15 13 21 21 C 1.46498 * 119.99920 * 184.73079 * 12 10 8 22 22 C 1.52995 * 109.47741 * 90.00319 * 21 12 10 23 23 C 1.50693 * 109.47583 * 179.97438 * 22 21 12 24 24 O 1.20831 * 119.99857 * 0.02562 * 23 22 21 25 25 O 1.34229 * 120.00300 * 180.02562 * 23 22 21 26 26 O 1.43745 * 107.29723 * 2.02394 * 8 5 4 27 27 H 1.09000 * 109.47252 * 298.49205 * 1 2 3 28 28 H 1.09004 * 109.46974 * 58.49156 * 1 2 3 29 29 H 1.09001 * 109.46844 * 178.49150 * 1 2 3 30 30 H 1.09003 * 110.90193 * 86.27886 * 4 2 1 31 31 H 1.08997 * 110.93950 * 322.68934 * 4 2 1 32 32 H 1.08998 * 109.47134 * 309.53158 * 7 5 4 33 33 H 1.09001 * 109.47185 * 69.52546 * 7 5 4 34 34 H 1.08998 * 109.46927 * 189.52878 * 7 5 4 35 35 H 0.96999 * 119.99309 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.47226 * 210.00560 * 21 12 10 37 37 H 1.09004 * 109.47162 * 330.00332 * 21 12 10 38 38 H 1.08997 * 109.47327 * 300.00372 * 22 21 12 39 39 H 1.09004 * 109.46783 * 59.99780 * 22 21 12 40 40 H 0.96699 * 116.99906 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0759 -0.7895 -1.2170 5 6 3.4796 -1.2168 -0.7233 6 1 4.2407 -0.5332 -1.0995 7 6 3.7888 -2.6513 -1.1561 8 6 3.3839 -1.1254 0.8120 9 1 3.6045 -2.0963 1.2556 10 6 4.3539 -0.0941 1.3285 11 8 3.9427 0.9589 1.7679 12 7 5.6784 -0.3420 1.3021 13 6 6.1496 -1.4892 0.7177 14 1 5.6469 -2.4292 0.8909 15 6 7.2740 -1.4425 -0.0974 16 7 7.6806 -0.2943 -0.5907 17 14 8.2074 -3.0116 -0.4918 18 1 7.6468 -3.6250 -1.7225 19 1 9.6419 -2.6934 -0.7068 20 1 8.0758 -3.9638 0.6401 21 6 6.6146 0.6144 1.8979 22 6 6.8374 0.2608 3.3696 23 6 7.8009 1.2443 3.9823 24 8 8.2618 2.1368 3.3108 25 8 8.1472 1.1288 5.2740 26 8 2.0384 -0.7352 1.1339 27 1 -0.3634 0.4902 0.9032 28 1 -0.3633 0.5371 -0.8762 29 1 -0.3633 -1.0273 -0.0271 30 1 2.1510 -0.1477 -2.0949 31 1 1.4553 -1.6607 -1.4263 32 1 2.9590 -3.3014 -0.8787 33 1 3.9292 -2.6825 -2.2366 34 1 4.6984 -2.9919 -0.6615 35 1 8.4653 -0.2618 -1.1600 36 1 7.5651 0.5718 1.3661 37 1 6.2020 1.6207 1.8244 38 1 5.8869 0.3034 3.9015 39 1 7.2500 -0.7454 3.4431 40 1 8.7679 1.7833 5.6223 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594217748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:58 Heat of formation + Delta-G solvation = -180.447600 kcal Electronic energy + Delta-G solvation = -24095.315442 eV Core-core repulsion = 20488.960202 eV Total energy + Delta-G solvation = -3606.355240 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.95300 -39.65154 -37.63732 -35.79220 -34.93447 -32.97928 -32.03930 -31.68605 -30.43422 -26.50634 -26.35906 -25.18969 -23.42636 -21.02262 -20.53474 -20.02746 -19.15789 -17.80032 -17.14628 -16.48865 -15.99976 -15.77135 -15.43910 -15.00647 -14.55461 -14.19707 -13.85331 -13.45693 -13.28272 -12.81999 -12.69571 -12.56046 -12.39624 -11.99276 -11.88024 -11.79605 -11.46429 -11.25583 -11.18211 -11.14803 -10.91667 -10.83474 -10.56202 -10.42418 -10.15935 -10.12789 -10.08023 -10.01478 -9.63339 -9.12025 -8.16544 -7.55249 -6.43843 -4.22642 2.65662 3.04543 3.16322 3.17592 3.38901 3.78336 4.04057 4.34138 4.77157 4.89360 5.06006 5.13336 5.47570 5.58645 5.62349 5.66448 5.75916 5.79340 5.88423 5.96272 6.02182 6.08878 6.16798 6.24534 6.32694 6.33971 6.41458 6.46934 6.51597 6.77370 6.80679 6.85380 6.89938 7.25459 7.37192 7.49732 7.88073 8.25055 8.30320 8.99073 9.40001 9.84337 10.58158 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013475 B = 0.007109 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.424025 B = 3937.755239 C = 5541.450322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 H 0.072 0.928 4 C -0.149 4.149 5 C -0.096 4.096 6 H 0.095 0.905 7 C -0.138 4.138 8 C 0.085 3.915 9 H 0.106 0.894 10 C 0.463 3.537 11 O -0.589 6.589 12 N -0.439 5.439 13 C -0.349 4.349 14 H 0.090 0.910 15 C 0.051 3.949 16 N -0.852 5.852 17 Si 0.904 3.096 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.267 1.267 21 C 0.129 3.871 22 C -0.125 4.125 23 C 0.483 3.517 24 O -0.515 6.515 25 O -0.525 6.525 26 O -0.357 6.357 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.271 0.729 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 -3.523 1.356 5.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.014 3.986 3 H 0.090 0.910 4 C -0.187 4.187 5 C -0.115 4.115 6 H 0.113 0.887 7 C -0.195 4.195 8 C 0.024 3.976 9 H 0.123 0.877 10 C 0.251 3.749 11 O -0.473 6.473 12 N -0.159 5.159 13 C -0.476 4.476 14 H 0.108 0.892 15 C -0.156 4.156 16 N -0.487 5.487 17 Si 0.730 3.270 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.192 1.192 21 C 0.005 3.995 22 C -0.164 4.164 23 C 0.325 3.675 24 O -0.402 6.402 25 O -0.336 6.336 26 O -0.276 6.276 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -4.738 -3.006 1.284 5.756 hybrid contribution 1.317 -0.289 -0.175 1.359 sum -3.421 -3.295 1.109 4.878 Atomic orbital electron populations 1.21729 0.93908 1.02206 1.01971 1.23077 0.94231 0.96156 0.85173 0.91014 1.23320 0.96775 1.00254 0.98350 1.22189 0.96817 0.99252 0.93231 0.88676 1.21848 1.02079 0.94668 1.00951 1.22470 0.82211 0.97207 0.95726 0.87653 1.21100 0.84311 0.88009 0.81455 1.90539 1.78790 1.26704 1.51297 1.43295 1.03004 1.20179 1.49422 1.19328 1.13992 0.86539 1.27764 0.89222 1.25401 0.98423 0.97415 0.94387 1.69919 1.24418 1.25321 1.29024 0.86305 0.79256 0.82204 0.79234 1.19946 1.20717 1.19154 1.21079 0.97535 0.92923 0.87938 1.21875 0.97255 0.98027 0.99235 1.23798 0.80067 0.84692 0.78929 1.90705 1.53015 1.34389 1.62112 1.84592 1.62550 1.57609 1.28863 1.88843 1.26068 1.73071 1.39573 0.92109 0.91632 0.92233 0.90874 0.90872 0.93575 0.93117 0.90509 0.91849 0.87342 0.91586 0.88568 0.87634 0.74140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.66 37.16 0.36 -1.54 16 2 C 0.07 1.23 3.80 -25.68 -0.10 1.14 16 3 H 0.07 1.39 8.02 -51.93 -0.42 0.98 16 4 C -0.15 -2.34 6.14 -24.72 -0.15 -2.49 16 5 C -0.10 -1.76 2.44 -89.09 -0.22 -1.98 16 6 H 0.09 2.05 7.54 -51.93 -0.39 1.66 16 7 C -0.14 -2.23 8.88 37.16 0.33 -1.90 16 8 C 0.08 1.73 2.77 -27.30 -0.08 1.66 16 9 H 0.11 2.05 6.89 -51.93 -0.36 1.69 16 10 C 0.46 11.10 6.75 -10.98 -0.07 11.02 16 11 O -0.59 -15.75 15.86 -13.86 -0.22 -15.97 16 12 N -0.44 -10.42 2.48 -114.81 -0.28 -10.71 16 13 C -0.35 -8.00 6.72 -14.93 -0.10 -8.10 16 14 H 0.09 1.94 5.61 -52.49 -0.29 1.65 16 15 C 0.05 1.20 5.00 -17.47 -0.09 1.12 16 16 N -0.85 -21.56 11.61 55.50 0.64 -20.91 16 17 Si 0.90 18.17 29.59 -169.99 -5.03 13.14 16 18 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 19 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 21 C 0.13 3.04 4.33 -4.05 -0.02 3.02 16 22 C -0.12 -2.43 6.13 -27.89 -0.17 -2.60 16 23 C 0.48 8.85 8.33 36.00 0.30 9.15 16 24 O -0.51 -10.98 16.74 -18.75 -0.31 -11.30 16 25 O -0.52 -7.49 13.42 -39.25 -0.53 -8.02 16 26 O -0.36 -7.30 10.49 -54.65 -0.57 -7.87 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.01 7.70 -51.93 -0.40 0.61 16 32 H 0.05 0.65 8.01 -51.93 -0.42 0.24 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.33 5.75 -51.93 -0.30 1.03 16 35 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 36 H 0.11 2.76 5.73 -51.93 -0.30 2.46 16 37 H 0.07 1.69 7.32 -51.93 -0.38 1.31 16 38 H 0.10 1.85 8.14 -51.93 -0.42 1.42 16 39 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 40 H 0.40 3.79 9.10 45.56 0.41 4.20 16 LS Contribution 329.43 15.07 4.96 4.96 Total: -1.00 -30.20 329.43 -6.27 -36.48 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -4.93 Total: 11.69 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 0.00 Total: 8.50 kcal Atomic # 7 Polarization: -31.98 SS G_CDS: 0.36 Total: -31.62 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -1.63 Total: -43.16 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.20 -6.27 -36.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594217748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.970 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds