Wall clock time and date at job start Tue Mar 31 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.67778 * 2 1 4 4 C 1.54994 * 110.62063 * 237.02818 * 2 1 3 5 5 C 1.54814 * 102.09287 * 204.47508 * 4 2 1 6 6 H 1.08997 * 110.48727 * 262.20646 * 5 4 2 7 7 C 1.52999 * 110.59774 * 139.61511 * 5 4 2 8 8 C 1.54099 * 104.18575 * 20.88652 * 5 4 2 9 9 H 1.08998 * 109.87930 * 121.45719 * 8 5 4 10 10 C 1.50710 * 109.99958 * 242.53177 * 8 5 4 11 11 O 1.21288 * 119.99889 * 108.81327 * 10 8 5 12 12 N 1.34770 * 119.99885 * 288.81556 * 10 8 5 13 13 C 1.37100 * 120.00119 * 4.72455 * 12 10 8 14 14 H 1.07998 * 120.00238 * 317.22493 * 13 12 10 15 15 C 1.38951 * 119.99921 * 137.22751 * 13 12 10 16 16 N 1.31416 * 119.99658 * 342.35088 * 15 13 12 17 17 Si 1.86793 * 120.00048 * 162.35039 * 15 13 12 18 18 H 1.48498 * 109.47213 * 90.00235 * 17 15 13 19 19 H 1.48502 * 109.47033 * 209.99672 * 17 15 13 20 20 H 1.48503 * 109.47359 * 330.00036 * 17 15 13 21 21 C 1.46498 * 119.99920 * 184.73079 * 12 10 8 22 22 C 1.52995 * 109.47741 * 90.00319 * 21 12 10 23 23 C 1.50693 * 109.47583 * 179.97438 * 22 21 12 24 24 O 1.20831 * 119.99857 * 0.02562 * 23 22 21 25 25 O 1.34229 * 120.00300 * 180.02562 * 23 22 21 26 26 O 1.43745 * 107.29723 * 2.02394 * 8 5 4 27 27 H 1.09000 * 109.47252 * 298.49205 * 1 2 3 28 28 H 1.09004 * 109.46974 * 58.49156 * 1 2 3 29 29 H 1.09001 * 109.46844 * 178.49150 * 1 2 3 30 30 H 1.09003 * 110.90193 * 86.27886 * 4 2 1 31 31 H 1.08997 * 110.93950 * 322.68934 * 4 2 1 32 32 H 1.08998 * 109.47134 * 309.53158 * 7 5 4 33 33 H 1.09001 * 109.47185 * 69.52546 * 7 5 4 34 34 H 1.08998 * 109.46927 * 189.52878 * 7 5 4 35 35 H 0.96999 * 119.99309 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.47226 * 210.00560 * 21 12 10 37 37 H 1.09004 * 109.47162 * 330.00332 * 21 12 10 38 38 H 1.08997 * 109.47327 * 300.00372 * 22 21 12 39 39 H 1.09004 * 109.46783 * 59.99780 * 22 21 12 40 40 H 0.96699 * 116.99906 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0759 -0.7895 -1.2170 5 6 3.4796 -1.2168 -0.7233 6 1 4.2407 -0.5332 -1.0995 7 6 3.7888 -2.6513 -1.1561 8 6 3.3839 -1.1254 0.8120 9 1 3.6045 -2.0963 1.2556 10 6 4.3539 -0.0941 1.3285 11 8 3.9427 0.9589 1.7679 12 7 5.6784 -0.3420 1.3021 13 6 6.1496 -1.4892 0.7177 14 1 5.6469 -2.4292 0.8909 15 6 7.2740 -1.4425 -0.0974 16 7 7.6806 -0.2943 -0.5907 17 14 8.2074 -3.0116 -0.4918 18 1 7.6468 -3.6250 -1.7225 19 1 9.6419 -2.6934 -0.7068 20 1 8.0758 -3.9638 0.6401 21 6 6.6146 0.6144 1.8979 22 6 6.8374 0.2608 3.3696 23 6 7.8009 1.2443 3.9823 24 8 8.2618 2.1368 3.3108 25 8 8.1472 1.1288 5.2740 26 8 2.0384 -0.7352 1.1339 27 1 -0.3634 0.4902 0.9032 28 1 -0.3633 0.5371 -0.8762 29 1 -0.3633 -1.0273 -0.0271 30 1 2.1510 -0.1477 -2.0949 31 1 1.4553 -1.6607 -1.4263 32 1 2.9590 -3.3014 -0.8787 33 1 3.9292 -2.6825 -2.2366 34 1 4.6984 -2.9919 -0.6615 35 1 8.4653 -0.2618 -1.1600 36 1 7.5651 0.5718 1.3661 37 1 6.2020 1.6207 1.8244 38 1 5.8869 0.3034 3.9015 39 1 7.2500 -0.7454 3.4431 40 1 8.7679 1.7833 5.6223 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594217748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:58 Heat of formation + Delta-G solvation = -200.016950 kcal Electronic energy + Delta-G solvation = -24096.164033 eV Core-core repulsion = 20488.960202 eV Total energy + Delta-G solvation = -3607.203831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.56159 -41.16363 -39.34006 -37.22719 -36.79249 -34.44303 -33.82942 -33.10731 -32.09725 -27.96729 -27.74060 -26.97080 -25.09277 -22.44703 -21.98129 -21.55198 -20.95530 -19.32069 -18.80440 -18.14580 -17.58822 -17.27887 -16.96599 -16.68580 -16.21573 -15.89826 -15.39751 -14.98384 -14.89972 -14.38015 -14.16518 -14.11871 -13.74959 -13.49033 -13.32497 -12.98236 -12.90449 -12.86295 -12.77225 -12.61598 -12.58569 -12.31196 -12.09431 -12.02088 -11.87344 -11.69246 -11.55736 -11.43413 -11.19394 -10.89089 -9.97462 -9.44894 -8.25949 -6.10272 1.16126 1.44766 1.52736 1.62005 1.86121 2.04837 2.37938 2.80102 3.06929 3.18549 3.67917 3.83375 3.96849 4.03035 4.10780 4.24015 4.31993 4.43893 4.48543 4.56630 4.71462 4.73238 4.74787 4.81174 4.89785 4.97642 5.05196 5.16024 5.18706 5.31254 5.31948 5.38102 5.47295 5.56274 5.60650 5.99369 6.03729 6.41173 6.97745 7.14503 7.53352 7.98779 8.77450 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013475 B = 0.007109 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.424025 B = 3937.755239 C = 5541.450322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.060 3.940 3 H 0.037 0.963 4 C -0.137 4.137 5 C -0.093 4.093 6 H 0.053 0.947 7 C -0.132 4.132 8 C 0.089 3.911 9 H 0.118 0.882 10 C 0.447 3.553 11 O -0.629 6.629 12 N -0.443 5.443 13 C -0.349 4.349 14 H 0.108 0.892 15 C 0.013 3.987 16 N -0.892 5.892 17 Si 0.968 3.032 18 H -0.265 1.265 19 H -0.292 1.292 20 H -0.253 1.253 21 C 0.134 3.866 22 C -0.116 4.116 23 C 0.495 3.505 24 O -0.551 6.551 25 O -0.506 6.506 26 O -0.373 6.373 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.269 0.731 36 H 0.088 0.912 37 H 0.031 0.969 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.274 -6.107 1.293 8.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.003 3.997 3 H 0.055 0.945 4 C -0.174 4.174 5 C -0.113 4.113 6 H 0.071 0.929 7 C -0.189 4.189 8 C 0.028 3.972 9 H 0.136 0.864 10 C 0.237 3.763 11 O -0.517 6.517 12 N -0.163 5.163 13 C -0.475 4.475 14 H 0.125 0.875 15 C -0.191 4.191 16 N -0.529 5.529 17 Si 0.791 3.209 18 H -0.190 1.190 19 H -0.218 1.218 20 H -0.176 1.176 21 C 0.009 3.991 22 C -0.155 4.155 23 C 0.338 3.662 24 O -0.442 6.442 25 O -0.320 6.320 26 O -0.291 6.291 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.049 0.951 38 H 0.117 0.883 39 H 0.141 0.859 40 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -5.581 -5.611 1.256 8.013 hybrid contribution 1.595 0.612 -0.095 1.711 sum -3.986 -4.998 1.161 6.497 Atomic orbital electron populations 1.21719 0.90537 1.03678 1.03001 1.23286 0.96818 0.94416 0.85190 0.94496 1.23308 0.95098 1.01270 0.97739 1.22122 0.97422 1.00115 0.91623 0.92854 1.21804 1.02475 0.93086 1.01574 1.22478 0.81565 0.96105 0.97070 0.86442 1.21904 0.84918 0.88451 0.81059 1.90498 1.79440 1.28572 1.53146 1.43530 1.03162 1.20293 1.49270 1.19688 1.13929 0.86599 1.27332 0.87513 1.26182 0.98936 0.99980 0.93986 1.70061 1.24921 1.27719 1.30173 0.85316 0.77113 0.78773 0.79675 1.18996 1.21793 1.17617 1.20849 0.96129 0.91494 0.90588 1.21620 0.98118 0.99205 0.96548 1.23378 0.79321 0.83592 0.79863 1.90706 1.54379 1.35708 1.63369 1.84503 1.62913 1.58284 1.26272 1.88826 1.25693 1.73246 1.41378 0.92663 0.89026 0.90531 0.89724 0.87727 0.90878 0.91866 0.91859 0.92113 0.89385 0.95056 0.88264 0.85944 0.71148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.66 71.98 0.70 -2.57 16 2 C 0.06 2.05 3.80 31.28 0.12 2.17 16 3 H 0.04 1.49 8.02 -2.38 -0.02 1.47 16 4 C -0.14 -4.00 6.14 31.90 0.20 -3.81 16 5 C -0.09 -3.36 2.44 -9.80 -0.02 -3.39 16 6 H 0.05 2.36 7.54 -2.39 -0.02 2.34 16 7 C -0.13 -3.92 8.88 71.98 0.64 -3.28 16 8 C 0.09 3.62 2.77 30.22 0.08 3.70 16 9 H 0.12 4.44 6.89 -2.39 -0.02 4.42 16 10 C 0.45 22.17 6.75 87.66 0.59 22.76 16 11 O -0.63 -35.41 15.86 15.51 0.25 -35.17 16 12 N -0.44 -21.69 2.48 -635.54 -1.58 -23.26 16 13 C -0.35 -15.98 6.72 84.04 0.56 -15.41 16 14 H 0.11 4.48 5.61 -2.91 -0.02 4.46 16 15 C 0.01 0.61 5.00 84.93 0.43 1.04 16 16 N -0.89 -46.49 11.61 21.66 0.25 -46.24 16 17 Si 0.97 36.50 29.59 68.60 2.03 38.53 16 18 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 19 H -0.29 -11.44 7.11 99.48 0.71 -10.74 16 20 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 21 C 0.13 6.58 4.33 86.38 0.37 6.95 16 22 C -0.12 -4.56 6.13 29.84 0.18 -4.38 16 23 C 0.49 18.03 8.33 71.23 0.59 18.62 16 24 O -0.55 -24.01 16.74 21.95 0.37 -23.64 16 25 O -0.51 -13.44 13.42 -51.41 -0.69 -14.13 16 26 O -0.37 -15.10 10.49 -130.42 -1.37 -16.47 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.10 2.44 7.70 -2.39 -0.02 2.42 16 32 H 0.07 1.78 8.01 -2.39 -0.02 1.76 16 33 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 2.04 5.75 -2.39 -0.01 2.03 16 35 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 36 H 0.09 4.70 5.73 -2.38 -0.01 4.69 16 37 H 0.03 1.71 7.32 -2.38 -0.02 1.69 16 38 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 39 H 0.12 4.38 8.14 -2.38 -0.02 4.36 16 40 H 0.43 6.99 9.10 -74.06 -0.67 6.31 16 Total: -1.00 -68.67 329.43 4.09 -64.58 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.39 Total: 33.39 kcal Atomic # 6 Polarization: 17.97 SS G_CDS: 4.44 Total: 22.41 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -1.32 Total: -69.50 kcal Atomic # 8 Polarization: -87.96 SS G_CDS: -1.44 Total: -89.40 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Total: -68.67 4.09 -64.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594217748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.440 kcal (2) G-P(sol) polarization free energy of solvation -68.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds