Wall clock time and date at job start Tue Mar 31 2020 05:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00033 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00301 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00275 * 3 2 1 7 7 C 1.37885 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99503 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72561 * 11 10 9 14 14 C 1.46506 * 119.99968 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47161 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.54591 * 59.99366 * 15 14 13 17 17 O 1.20823 * 119.99609 * 119.99884 * 16 15 14 18 18 O 1.34226 * 120.00384 * 300.00150 * 16 15 14 19 19 C 1.53183 * 109.54070 * 299.81803 * 15 14 13 20 20 C 1.53275 * 109.06389 * 297.03097 * 19 15 14 21 21 O 1.42902 * 109.46444 * 302.44311 * 20 19 15 22 22 C 1.42907 * 114.09421 * 61.15978 * 21 20 19 23 23 C 1.53095 * 109.41279 * 298.84160 * 22 21 20 24 24 H 0.96999 * 119.99905 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 26 26 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 27 27 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 28 28 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 29 29 H 0.96998 * 120.00525 * 359.97438 * 13 11 10 30 30 H 1.09004 * 109.46587 * 299.99661 * 14 13 11 31 31 H 1.08998 * 109.47213 * 59.99069 * 14 13 11 32 32 H 0.96691 * 117.00068 * 179.97438 * 18 16 15 33 33 H 1.08997 * 109.52328 * 57.02598 * 19 15 14 34 34 H 1.09001 * 109.52175 * 177.21018 * 19 15 14 35 35 H 1.09006 * 109.45950 * 182.44951 * 20 19 15 36 36 H 1.08999 * 109.46943 * 62.44623 * 20 19 15 37 37 H 1.08997 * 109.47937 * 178.86259 * 22 21 20 38 38 H 1.08998 * 109.48828 * 58.82974 * 22 21 20 39 39 H 1.08998 * 109.52840 * 297.70332 * 23 22 21 40 40 H 1.09005 * 109.57395 * 177.54255 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4916 -4.9673 -0.0020 12 8 0.2788 -4.9672 -0.0020 13 7 2.1655 -6.1344 -0.0075 14 6 1.4329 -7.4032 -0.0085 15 6 2.4271 -8.5661 -0.0157 16 6 3.2991 -8.4914 1.2111 17 8 3.3071 -9.4040 2.0029 18 8 4.0668 -7.4112 1.4242 19 6 3.3010 -8.4853 -1.2712 20 6 2.4126 -8.6412 -2.5105 21 8 1.7071 -9.8817 -2.4376 22 6 0.8391 -9.9938 -1.3079 23 6 1.6629 -9.8936 -0.0213 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5564 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 2.8712 -3.6048 0.8890 28 1 2.8725 -3.6040 -0.8909 29 1 3.1354 -6.1345 -0.0114 30 1 0.8093 -7.4633 0.8834 31 1 0.8032 -7.4584 -0.8965 32 1 4.6087 -7.4089 2.2250 33 1 3.8064 -7.5200 -1.3018 34 1 4.0416 -9.2848 -1.2515 35 1 3.0334 -8.6282 -3.4063 36 1 1.6984 -7.8187 -2.5512 37 1 0.3265 -10.9553 -1.3373 38 1 0.1043 -9.1891 -1.3326 39 1 2.3705 -10.7214 0.0236 40 1 0.9986 -9.9350 0.8419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594605688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:23 Heat of formation + Delta-G solvation = -190.872365 kcal Electronic energy + Delta-G solvation = -23303.847673 eV Core-core repulsion = 19697.040381 eV Total energy + Delta-G solvation = -3606.807292 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48561 -39.46140 -38.87625 -36.49702 -35.70642 -33.46069 -33.03759 -31.53663 -30.96143 -27.69815 -26.18362 -24.93838 -24.04726 -22.53051 -21.58876 -19.83060 -19.37348 -18.30399 -17.49798 -16.94544 -16.36469 -16.34274 -15.82854 -15.70578 -15.21049 -15.18106 -14.94185 -14.44181 -14.06451 -13.82079 -13.73444 -13.03695 -12.87932 -12.74573 -12.20320 -12.11305 -11.87828 -11.76269 -11.73507 -11.19109 -11.16265 -10.98822 -10.93081 -10.65904 -10.60166 -9.96688 -9.86468 -9.68079 -9.20674 -9.03945 -8.84289 -8.32774 -5.96900 -4.01307 1.83419 2.58610 3.21743 3.32627 3.36354 3.39659 3.42479 3.54338 4.05766 4.13213 4.32211 4.47074 4.52607 4.71624 4.84162 4.92430 5.16389 5.19741 5.28898 5.34250 5.37752 5.38166 5.46732 5.59507 5.63020 5.74546 5.80177 6.16730 6.21640 6.24102 6.62890 6.83051 6.88542 7.52977 7.73527 7.85279 7.87664 8.06304 8.37801 8.74487 9.07313 9.62308 11.14068 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025994 B = 0.003521 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.931346 B = 7950.432295 C = 8368.915825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.510 3.490 12 O -0.535 6.535 13 N -0.740 5.740 14 C 0.126 3.874 15 C -0.062 4.062 16 C 0.492 3.508 17 O -0.511 6.511 18 O -0.510 6.510 19 C -0.144 4.144 20 C 0.059 3.941 21 O -0.379 6.379 22 C 0.057 3.943 23 C -0.133 4.133 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.404 0.596 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.414 0.586 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.153 -20.870 -1.746 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.299 3.701 12 O -0.411 6.411 13 N -0.398 5.398 14 C 0.001 3.999 15 C -0.063 4.063 16 C 0.334 3.666 17 O -0.398 6.398 18 O -0.322 6.322 19 C -0.182 4.182 20 C -0.018 4.018 21 O -0.298 6.298 22 C -0.020 4.020 23 C -0.171 4.171 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.241 0.759 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.274 0.726 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.891 -21.134 -2.004 22.319 hybrid contribution 1.323 1.110 0.944 1.968 sum 8.214 -20.024 -1.061 21.669 Atomic orbital electron populations 1.69995 1.06066 1.26584 1.50190 1.25023 0.94814 0.99219 0.95299 0.86593 0.79771 0.83528 0.78066 1.20668 1.21237 1.19898 1.21222 0.92929 0.91010 1.51400 0.92598 1.18900 0.93181 0.89388 0.98606 1.21855 1.00692 0.91753 1.02537 1.21595 0.88623 0.85596 0.74299 1.90675 1.14490 1.87667 1.48238 1.46333 1.10587 1.04805 1.78107 1.21332 0.93181 0.81789 1.03582 1.20913 0.95096 0.98518 0.91800 1.23175 0.77712 0.78925 0.86785 1.90721 1.64135 1.38508 1.46433 1.84436 1.55228 1.43485 1.49056 1.22311 0.98442 1.04366 0.93073 1.22684 0.94813 0.86927 0.97373 1.87958 1.59297 1.37090 1.45430 1.22706 0.91786 1.03168 0.84308 1.22131 1.00321 0.94683 0.99989 0.92950 0.95823 0.95862 0.90205 0.90220 0.75882 0.91031 0.89853 0.72634 0.89061 0.90057 0.87941 0.91919 0.87914 0.92119 0.89440 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.81 9.11 -34.44 -0.31 -15.12 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 10 C -0.13 -2.54 5.64 -27.88 -0.16 -2.70 16 11 C 0.51 9.47 7.83 -10.98 -0.09 9.38 16 12 O -0.54 -12.27 15.98 5.56 0.09 -12.18 16 13 N -0.74 -9.82 4.74 -60.29 -0.29 -10.10 16 14 C 0.13 1.47 4.00 -4.04 -0.02 1.45 16 15 C -0.06 -0.57 0.50 -155.48 -0.08 -0.65 16 16 C 0.49 5.01 6.92 36.01 0.25 5.26 16 17 O -0.51 -6.50 16.73 -18.75 -0.31 -6.81 16 18 O -0.51 -4.09 10.98 -39.25 -0.43 -4.52 16 19 C -0.14 -1.14 4.74 -26.49 -0.13 -1.27 16 20 C 0.06 0.49 6.57 37.30 0.24 0.74 16 21 O -0.38 -3.66 10.77 -35.23 -0.38 -4.04 16 22 C 0.06 0.46 6.57 37.21 0.24 0.71 16 23 C -0.13 -1.14 4.23 -26.59 -0.11 -1.25 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.40 4.45 5.35 -40.82 -0.22 4.23 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.99 5.00 -51.93 -0.26 0.73 16 32 H 0.41 1.79 9.10 45.56 0.41 2.20 16 33 H 0.09 0.68 6.81 -51.93 -0.35 0.32 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.58 6.60 -51.93 -0.34 0.23 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.50 6.60 -51.93 -0.34 0.15 16 39 H 0.09 0.77 8.03 -51.93 -0.42 0.35 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -36.07 325.91 -5.92 -42.00 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.86 Total: 1.84 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -0.37 Total: -1.01 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.45 Total: -36.65 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -1.03 Total: -27.55 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.07 -5.92 -42.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.875 kcal (2) G-P(sol) polarization free energy of solvation -36.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds