Wall clock time and date at job start Tue Mar 31 2020 05:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00033 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00301 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00275 * 3 2 1 7 7 C 1.37885 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99503 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72561 * 11 10 9 14 14 C 1.46506 * 119.99968 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47161 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.54591 * 59.99366 * 15 14 13 17 17 O 1.20823 * 119.99609 * 119.99884 * 16 15 14 18 18 O 1.34226 * 120.00384 * 300.00150 * 16 15 14 19 19 C 1.53183 * 109.54070 * 299.81803 * 15 14 13 20 20 C 1.53275 * 109.06389 * 297.03097 * 19 15 14 21 21 O 1.42902 * 109.46444 * 302.44311 * 20 19 15 22 22 C 1.42907 * 114.09421 * 61.15978 * 21 20 19 23 23 C 1.53095 * 109.41279 * 298.84160 * 22 21 20 24 24 H 0.96999 * 119.99905 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 26 26 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 27 27 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 28 28 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 29 29 H 0.96998 * 120.00525 * 359.97438 * 13 11 10 30 30 H 1.09004 * 109.46587 * 299.99661 * 14 13 11 31 31 H 1.08998 * 109.47213 * 59.99069 * 14 13 11 32 32 H 0.96691 * 117.00068 * 179.97438 * 18 16 15 33 33 H 1.08997 * 109.52328 * 57.02598 * 19 15 14 34 34 H 1.09001 * 109.52175 * 177.21018 * 19 15 14 35 35 H 1.09006 * 109.45950 * 182.44951 * 20 19 15 36 36 H 1.08999 * 109.46943 * 62.44623 * 20 19 15 37 37 H 1.08997 * 109.47937 * 178.86259 * 22 21 20 38 38 H 1.08998 * 109.48828 * 58.82974 * 22 21 20 39 39 H 1.08998 * 109.52840 * 297.70332 * 23 22 21 40 40 H 1.09005 * 109.57395 * 177.54255 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4916 -4.9673 -0.0020 12 8 0.2788 -4.9672 -0.0020 13 7 2.1655 -6.1344 -0.0075 14 6 1.4329 -7.4032 -0.0085 15 6 2.4271 -8.5661 -0.0157 16 6 3.2991 -8.4914 1.2111 17 8 3.3071 -9.4040 2.0029 18 8 4.0668 -7.4112 1.4242 19 6 3.3010 -8.4853 -1.2712 20 6 2.4126 -8.6412 -2.5105 21 8 1.7071 -9.8817 -2.4376 22 6 0.8391 -9.9938 -1.3079 23 6 1.6629 -9.8936 -0.0213 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5564 -0.8919 26 1 0.6240 -2.5575 0.8881 27 1 2.8712 -3.6048 0.8890 28 1 2.8725 -3.6040 -0.8909 29 1 3.1354 -6.1345 -0.0114 30 1 0.8093 -7.4633 0.8834 31 1 0.8032 -7.4584 -0.8965 32 1 4.6087 -7.4089 2.2250 33 1 3.8064 -7.5200 -1.3018 34 1 4.0416 -9.2848 -1.2515 35 1 3.0334 -8.6282 -3.4063 36 1 1.6984 -7.8187 -2.5512 37 1 0.3265 -10.9553 -1.3373 38 1 0.1043 -9.1891 -1.3326 39 1 2.3705 -10.7214 0.0236 40 1 0.9986 -9.9350 0.8419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605688.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:23 Heat of formation + Delta-G solvation = -218.549472 kcal Electronic energy + Delta-G solvation = -23305.047842 eV Core-core repulsion = 19697.040381 eV Total energy + Delta-G solvation = -3608.007461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.30677 -40.55220 -39.97002 -37.27181 -36.70431 -35.53243 -34.18217 -32.89155 -32.19082 -28.86622 -27.51828 -26.28272 -24.78798 -23.42728 -23.23925 -21.24960 -20.21458 -19.18544 -18.72323 -18.26262 -17.57398 -17.23274 -17.02660 -16.75520 -16.43946 -16.36409 -16.10614 -15.84003 -15.05823 -14.98605 -14.59227 -14.30703 -14.16717 -14.00260 -13.48260 -13.40770 -13.19980 -12.79938 -12.71462 -12.58536 -12.44370 -12.41145 -11.88960 -11.88830 -11.79829 -11.61245 -11.35581 -11.28237 -10.74345 -10.59082 -10.54591 -10.07995 -8.16131 -6.29820 1.02888 1.43932 1.46332 1.57156 1.72265 1.88262 2.17348 2.45740 2.90920 3.17257 3.25343 3.38386 3.54119 3.87273 3.99584 4.10191 4.17067 4.19849 4.44713 4.48894 4.53231 4.59457 4.59763 4.65303 4.70859 4.77002 4.97131 5.00158 5.07781 5.11453 5.38972 5.51555 5.53988 5.66404 5.88038 6.17703 6.20084 6.58250 6.89013 6.89548 7.34671 7.40632 8.96520 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025994 B = 0.003521 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.931346 B = 7950.432295 C = 8368.915825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.255 1.255 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.118 4.118 11 C 0.513 3.487 12 O -0.588 6.588 13 N -0.713 5.713 14 C 0.126 3.874 15 C -0.056 4.056 16 C 0.496 3.504 17 O -0.538 6.538 18 O -0.506 6.506 19 C -0.139 4.139 20 C 0.056 3.944 21 O -0.392 6.392 22 C 0.056 3.944 23 C -0.129 4.129 24 H 0.262 0.738 25 H -0.016 1.016 26 H -0.019 1.019 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.419 0.581 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.432 0.568 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.051 0.949 37 H 0.120 0.880 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.896 -21.149 -2.024 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.179 1.179 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.004 3.996 10 C -0.158 4.158 11 C 0.302 3.698 12 O -0.468 6.468 13 N -0.370 5.370 14 C 0.002 3.998 15 C -0.058 4.058 16 C 0.339 3.661 17 O -0.428 6.428 18 O -0.320 6.320 19 C -0.177 4.177 20 C -0.021 4.021 21 O -0.311 6.311 22 C -0.021 4.021 23 C -0.168 4.168 24 H 0.071 0.929 25 H 0.002 0.998 26 H -0.001 1.001 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.259 0.741 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.295 0.705 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.069 0.931 37 H 0.138 0.862 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.715 -21.445 -2.277 23.653 hybrid contribution 0.469 1.146 1.043 1.619 sum 10.183 -20.299 -1.234 22.744 Atomic orbital electron populations 1.70174 1.08316 1.27744 1.51586 1.26117 0.95677 1.03879 0.94697 0.85341 0.78691 0.77828 0.78506 1.19707 1.21372 1.17881 1.21728 0.94035 0.91600 1.50619 0.90523 1.18695 0.93742 0.92475 0.94720 1.21628 0.99289 0.89928 1.04964 1.21323 0.87760 0.86647 0.74078 1.90666 1.16647 1.88384 1.51066 1.45985 1.11228 1.04009 1.75746 1.21394 0.93722 0.81577 1.03106 1.20881 0.94746 0.97635 0.92499 1.23234 0.77585 0.78855 0.86437 1.90719 1.65159 1.39604 1.47280 1.84373 1.55058 1.42359 1.50223 1.22325 0.98219 1.05306 0.91853 1.22783 0.94769 0.86191 0.98342 1.87945 1.59598 1.37596 1.45955 1.22797 0.91509 1.04006 0.83750 1.22109 1.00299 0.94164 1.00184 0.92920 0.99802 1.00064 0.87844 0.87495 0.74099 0.92209 0.89829 0.70536 0.88144 0.88971 0.86280 0.93064 0.86226 0.92566 0.89294 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.11 13.29 21.45 0.28 -58.83 16 2 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 3 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.54 -30.34 9.11 25.60 0.23 -30.10 16 8 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.04 2.26 4.26 29.85 0.13 2.39 16 10 C -0.12 -4.56 5.64 29.85 0.17 -4.39 16 11 C 0.51 18.90 7.83 87.66 0.69 19.59 16 12 O -0.59 -27.85 15.98 -3.04 -0.05 -27.90 16 13 N -0.71 -17.81 4.74 -463.05 -2.20 -20.01 16 14 C 0.13 2.84 4.00 86.38 0.35 3.18 16 15 C -0.06 -0.95 0.50 -52.81 -0.03 -0.98 16 16 C 0.50 9.13 6.92 71.24 0.49 9.62 16 17 O -0.54 -12.91 16.73 21.97 0.37 -12.54 16 18 O -0.51 -6.72 10.98 -51.38 -0.56 -7.29 16 19 C -0.14 -1.87 4.74 30.75 0.15 -1.73 16 20 C 0.06 0.83 6.57 72.07 0.47 1.30 16 21 O -0.39 -6.96 10.77 -148.98 -1.60 -8.57 16 22 C 0.06 0.84 6.57 72.01 0.47 1.31 16 23 C -0.13 -2.05 4.23 30.69 0.13 -1.92 16 24 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 25 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 26 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 27 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 28 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 29 H 0.42 8.03 5.35 -92.71 -0.50 7.54 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.95 5.00 -2.39 -0.01 1.94 16 32 H 0.43 2.51 9.10 -74.06 -0.67 1.83 16 33 H 0.10 1.17 6.81 -2.39 -0.02 1.15 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.05 0.88 6.60 -2.39 -0.02 0.87 16 37 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 0.89 6.60 -2.39 -0.02 0.88 16 39 H 0.09 1.42 8.03 -2.39 -0.02 1.41 16 40 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -80.42 325.91 1.88 -78.54 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -0.10 Total: 12.46 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: 3.71 Total: -1.62 kcal Atomic # 7 Polarization: -76.93 SS G_CDS: -1.91 Total: -78.84 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -1.85 Total: -56.30 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -80.42 1.88 -78.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605688.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.008 kcal (2) G-P(sol) polarization free energy of solvation -80.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds