Wall clock time and date at job start Tue Mar 31 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42900 * 110.88504 * 297.29223 * 9 7 2 11 11 C 1.55157 * 111.00344 * 61.17254 * 9 7 2 12 12 C 1.54322 * 102.93912 * 153.57728 * 11 9 7 13 13 N 1.47022 * 107.27482 * 337.80443 * 12 11 9 14 14 C 1.34775 * 125.65138 * 178.98361 * 13 12 11 15 15 O 1.21280 * 120.00143 * 179.97438 * 14 13 12 16 16 C 1.50695 * 120.00178 * 359.97438 * 14 13 12 17 17 C 1.52996 * 109.47349 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47327 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.47327 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.47128 * 179.97438 * 19 18 17 21 21 O 1.20827 * 119.99910 * 0.02562 * 20 19 18 22 22 O 1.34233 * 119.99917 * 179.97438 * 20 19 18 23 23 C 1.47424 * 108.69909 * 358.94436 * 13 12 11 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 0.96704 * 113.99783 * 59.29596 * 10 9 7 26 26 H 1.08995 * 110.72243 * 271.93651 * 11 9 7 27 27 H 1.08996 * 110.71924 * 35.21744 * 11 9 7 28 28 H 1.09003 * 109.88512 * 97.22334 * 12 11 9 29 29 H 1.09001 * 109.88623 * 218.23719 * 12 11 9 30 30 H 1.09005 * 109.47278 * 300.00194 * 16 14 13 31 31 H 1.09003 * 109.46815 * 59.99497 * 16 14 13 32 32 H 1.08999 * 109.47124 * 299.99743 * 17 16 14 33 33 H 1.09003 * 109.47348 * 60.00099 * 17 16 14 34 34 H 1.09009 * 109.47006 * 300.00083 * 18 17 16 35 35 H 1.09003 * 109.46799 * 59.99795 * 18 17 16 36 36 H 1.08996 * 109.47292 * 300.00258 * 19 18 17 37 37 H 1.09002 * 109.46864 * 59.99935 * 19 18 17 38 38 H 0.96698 * 117.00120 * 179.97438 * 22 20 19 39 39 H 1.09007 * 110.36818 * 265.28667 * 23 13 12 40 40 H 1.09006 * 110.37032 * 142.96345 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4609 -2.6367 1.1775 11 6 0.3735 -2.6290 -1.2784 12 6 0.2582 -4.1566 -1.4644 13 7 1.3940 -4.7691 -0.7599 14 6 1.6415 -6.0908 -0.6687 15 8 2.6133 -6.4852 -0.0597 16 6 0.7107 -7.0787 -1.3234 17 6 1.2163 -8.5004 -1.0709 18 6 0.2708 -9.5034 -1.7351 19 6 0.7768 -10.9252 -1.4832 20 6 -0.1548 -11.9131 -2.1369 21 8 -1.1237 -11.5202 -2.7425 22 8 0.0924 -13.2294 -2.0471 23 6 2.2179 -3.6980 -0.1706 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1933 -1.9347 1.2973 26 1 -0.6088 -2.1850 -1.1167 27 1 0.8679 -2.1724 -2.1357 28 1 -0.6790 -4.5125 -1.0364 29 1 0.2993 -4.4051 -2.5249 30 1 -0.2895 -6.9685 -0.9041 31 1 0.6774 -6.8903 -2.3965 32 1 2.2162 -8.6103 -1.4906 33 1 1.2498 -8.6890 0.0021 34 1 -0.7290 -9.3934 -1.3150 35 1 0.2369 -9.3150 -2.8082 36 1 1.7764 -11.0349 -1.9035 37 1 0.8111 -11.1138 -0.4102 38 1 -0.5336 -13.8243 -2.4822 39 1 3.0360 -3.4358 -0.8417 40 1 2.6066 -4.0084 0.7994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594605718.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:05 Heat of formation + Delta-G solvation = -198.829006 kcal Electronic energy + Delta-G solvation = -22315.774493 eV Core-core repulsion = 18708.622175 eV Total energy + Delta-G solvation = -3607.152317 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.53745 -39.50590 -37.39298 -36.57403 -35.25359 -34.28034 -32.24074 -31.27933 -29.68779 -28.34334 -26.33041 -24.76717 -22.61583 -21.72835 -20.85095 -19.73470 -18.63520 -18.34857 -17.21604 -16.73754 -16.66650 -16.47802 -15.71351 -15.05119 -14.95704 -14.69030 -14.21446 -13.76542 -13.67789 -13.19445 -12.86085 -12.72561 -12.19526 -12.05354 -11.89224 -11.80004 -11.68264 -11.45427 -11.35638 -11.32123 -11.22248 -10.88745 -10.85461 -10.71423 -10.61073 -10.52071 -10.04254 -9.44457 -9.29746 -8.70316 -8.24432 -7.97973 -6.30545 -4.38979 1.90588 2.72870 3.10395 3.20393 3.25371 3.28526 3.58948 4.25027 4.48970 4.69045 4.74083 4.93904 4.99507 5.13753 5.19321 5.38769 5.49283 5.56572 5.57025 5.68244 5.75100 5.81464 5.86870 6.02221 6.13621 6.17228 6.28579 6.30380 6.43232 6.65357 6.88977 6.97010 7.29343 7.33599 7.57342 7.71170 7.99228 8.16200 8.62584 8.67341 9.28512 9.37652 10.76585 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.050611 B = 0.002653 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.107370 B =10553.186852 C =10807.852119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.247 3.753 10 O -0.583 6.583 11 C -0.136 4.136 12 C 0.099 3.901 13 N -0.608 5.608 14 C 0.521 3.479 15 O -0.559 6.559 16 C -0.135 4.135 17 C -0.103 4.103 18 C -0.111 4.111 19 C -0.114 4.114 20 C 0.477 3.523 21 O -0.516 6.516 22 O -0.521 6.521 23 C 0.119 3.881 24 H 0.269 0.731 25 H 0.381 0.619 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.409 0.591 39 H 0.071 0.929 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.997 -17.349 -5.375 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.207 3.793 10 O -0.392 6.392 11 C -0.175 4.175 12 C -0.024 4.024 13 N -0.340 5.340 14 C 0.309 3.691 15 O -0.439 6.439 16 C -0.175 4.175 17 C -0.140 4.140 18 C -0.148 4.148 19 C -0.151 4.151 20 C 0.320 3.680 21 O -0.404 6.404 22 O -0.333 6.333 23 C -0.002 4.002 24 H 0.078 0.922 25 H 0.231 0.769 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.267 0.733 39 H 0.089 0.911 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.253 -17.664 -4.956 18.389 hybrid contribution -0.498 1.104 -0.524 1.320 sum -1.751 -16.560 -5.481 17.531 Atomic orbital electron populations 1.69711 1.05949 1.27757 1.50023 1.24996 0.95036 0.99533 0.93468 0.86470 0.79542 0.82041 0.78893 1.20053 1.21124 1.19984 1.21414 0.93714 0.90182 1.52164 0.91769 1.19611 0.86992 0.90732 0.81992 1.86136 1.54165 1.53805 1.45058 1.23168 1.03203 0.89991 1.01112 1.22184 0.88606 0.96751 0.94893 1.48653 1.27405 1.05165 1.52786 1.20225 0.86205 0.81841 0.80787 1.90648 1.30582 1.78489 1.44134 1.21602 0.99758 0.94128 1.02010 1.21316 0.98981 0.91935 1.01816 1.21489 0.99980 0.91117 1.02231 1.21426 0.98739 0.92251 1.02713 1.23715 0.84983 0.81968 0.77352 1.90736 1.29578 1.79872 1.40255 1.84557 1.56668 1.18845 1.73183 1.22357 0.93807 0.86272 0.97793 0.92153 0.76936 0.89501 0.91400 0.92393 0.92853 0.89069 0.89219 0.90934 0.90867 0.90819 0.90884 0.87409 0.87381 0.73285 0.91124 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.71 10.73 55.43 0.59 -22.11 16 2 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 3 Si 0.90 19.97 29.54 -169.99 -5.02 14.95 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -13.81 8.27 -34.44 -0.28 -14.10 16 8 H 0.06 1.65 7.79 -52.49 -0.41 1.24 16 9 C 0.25 5.90 0.88 -89.62 -0.08 5.82 16 10 O -0.58 -14.69 13.18 -35.23 -0.46 -15.16 16 11 C -0.14 -2.87 5.38 -24.90 -0.13 -3.01 16 12 C 0.10 1.74 6.49 -3.06 -0.02 1.72 16 13 N -0.61 -11.86 3.33 -170.52 -0.57 -12.43 16 14 C 0.52 9.49 7.85 -10.99 -0.09 9.40 16 15 O -0.56 -11.89 16.24 5.56 0.09 -11.80 16 16 C -0.14 -1.74 4.89 -27.89 -0.14 -1.88 16 17 C -0.10 -1.13 4.50 -26.73 -0.12 -1.25 16 18 C -0.11 -1.00 4.50 -26.73 -0.12 -1.12 16 19 C -0.11 -0.84 5.81 -27.88 -0.16 -1.00 16 20 C 0.48 4.22 8.33 36.01 0.30 4.52 16 21 O -0.52 -6.30 16.74 -18.75 -0.31 -6.61 16 22 O -0.52 -3.47 13.42 -39.27 -0.53 -4.00 16 23 C 0.12 2.66 6.08 -2.53 -0.02 2.64 16 24 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 25 H 0.38 9.56 7.51 45.56 0.34 9.90 16 26 H 0.09 1.92 7.54 -51.93 -0.39 1.53 16 27 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 33 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.07 0.70 8.10 -51.92 -0.42 0.28 16 35 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.41 1.10 9.10 45.56 0.41 1.51 16 39 H 0.07 1.53 8.03 -51.92 -0.42 1.11 16 40 H 0.07 1.66 8.04 -51.93 -0.42 1.24 16 LS Contribution 338.35 15.07 5.10 5.10 Total: -1.00 -31.27 338.35 -6.71 -37.98 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -4.65 Total: 10.58 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.95 Total: 3.49 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.03 Total: -34.54 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -1.21 Total: -37.57 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.27 -6.71 -37.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605718.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.846 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds