Wall clock time and date at job start Tue Mar 31 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42900 * 110.88504 * 297.29223 * 9 7 2 11 11 C 1.55157 * 111.00344 * 61.17254 * 9 7 2 12 12 C 1.54322 * 102.93912 * 153.57728 * 11 9 7 13 13 N 1.47022 * 107.27482 * 337.80443 * 12 11 9 14 14 C 1.34775 * 125.65138 * 178.98361 * 13 12 11 15 15 O 1.21280 * 120.00143 * 179.97438 * 14 13 12 16 16 C 1.50695 * 120.00178 * 359.97438 * 14 13 12 17 17 C 1.52996 * 109.47349 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47327 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.47327 * 179.97438 * 18 17 16 20 20 C 1.50701 * 109.47128 * 179.97438 * 19 18 17 21 21 O 1.20827 * 119.99910 * 0.02562 * 20 19 18 22 22 O 1.34233 * 119.99917 * 179.97438 * 20 19 18 23 23 C 1.47424 * 108.69909 * 358.94436 * 13 12 11 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 0.96704 * 113.99783 * 59.29596 * 10 9 7 26 26 H 1.08995 * 110.72243 * 271.93651 * 11 9 7 27 27 H 1.08996 * 110.71924 * 35.21744 * 11 9 7 28 28 H 1.09003 * 109.88512 * 97.22334 * 12 11 9 29 29 H 1.09001 * 109.88623 * 218.23719 * 12 11 9 30 30 H 1.09005 * 109.47278 * 300.00194 * 16 14 13 31 31 H 1.09003 * 109.46815 * 59.99497 * 16 14 13 32 32 H 1.08999 * 109.47124 * 299.99743 * 17 16 14 33 33 H 1.09003 * 109.47348 * 60.00099 * 17 16 14 34 34 H 1.09009 * 109.47006 * 300.00083 * 18 17 16 35 35 H 1.09003 * 109.46799 * 59.99795 * 18 17 16 36 36 H 1.08996 * 109.47292 * 300.00258 * 19 18 17 37 37 H 1.09002 * 109.46864 * 59.99935 * 19 18 17 38 38 H 0.96698 * 117.00120 * 179.97438 * 22 20 19 39 39 H 1.09007 * 110.36818 * 265.28667 * 23 13 12 40 40 H 1.09006 * 110.37032 * 142.96345 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.4609 -2.6367 1.1775 11 6 0.3735 -2.6290 -1.2784 12 6 0.2582 -4.1566 -1.4644 13 7 1.3940 -4.7691 -0.7599 14 6 1.6415 -6.0908 -0.6687 15 8 2.6133 -6.4852 -0.0597 16 6 0.7107 -7.0787 -1.3234 17 6 1.2163 -8.5004 -1.0709 18 6 0.2708 -9.5034 -1.7351 19 6 0.7768 -10.9252 -1.4832 20 6 -0.1548 -11.9131 -2.1369 21 8 -1.1237 -11.5202 -2.7425 22 8 0.0924 -13.2294 -2.0471 23 6 2.2179 -3.6980 -0.1706 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1933 -1.9347 1.2973 26 1 -0.6088 -2.1850 -1.1167 27 1 0.8679 -2.1724 -2.1357 28 1 -0.6790 -4.5125 -1.0364 29 1 0.2993 -4.4051 -2.5249 30 1 -0.2895 -6.9685 -0.9041 31 1 0.6774 -6.8903 -2.3965 32 1 2.2162 -8.6103 -1.4906 33 1 1.2498 -8.6890 0.0021 34 1 -0.7290 -9.3934 -1.3150 35 1 0.2369 -9.3150 -2.8082 36 1 1.7764 -11.0349 -1.9035 37 1 0.8111 -11.1138 -0.4102 38 1 -0.5336 -13.8243 -2.4822 39 1 3.0360 -3.4358 -0.8417 40 1 2.6066 -4.0084 0.7994 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605718.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:05 Heat of formation + Delta-G solvation = -221.669451 kcal Electronic energy + Delta-G solvation = -22316.764929 eV Core-core repulsion = 18708.622175 eV Total energy + Delta-G solvation = -3608.142753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22584 -40.99607 -39.02516 -37.22377 -36.16416 -36.00785 -34.21071 -32.33010 -31.21335 -29.98747 -27.63357 -26.23794 -23.96353 -22.78507 -21.58063 -21.46602 -20.09028 -19.10027 -18.99268 -17.99015 -17.40959 -17.36372 -16.96040 -16.85359 -16.49640 -15.92450 -15.81842 -15.17789 -14.80279 -14.36986 -14.16135 -13.86838 -13.69606 -13.43709 -13.26081 -13.21117 -13.02399 -12.64079 -12.61804 -12.52955 -12.46293 -12.27522 -12.26000 -12.08237 -11.84218 -11.57859 -11.49900 -11.25642 -10.84992 -10.62069 -10.14708 -9.54032 -8.23619 -6.38834 1.25888 1.43725 1.45584 1.52420 1.68878 2.06317 2.26879 2.41212 3.01259 3.58536 3.79329 3.84343 4.01551 4.05135 4.17529 4.30743 4.33593 4.42806 4.51893 4.61252 4.62412 4.74621 4.77581 4.82841 4.86553 4.93804 5.06812 5.19316 5.31105 5.31334 5.46609 5.46840 5.55997 5.67632 5.77990 6.08518 6.63572 6.70043 7.03581 7.20664 7.31453 7.40098 8.81720 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.050611 B = 0.002653 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.107370 B =10553.186852 C =10807.852119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.037 3.963 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.563 4.563 8 H 0.054 0.946 9 C 0.232 3.768 10 O -0.593 6.593 11 C -0.127 4.127 12 C 0.106 3.894 13 N -0.614 5.614 14 C 0.514 3.486 15 O -0.596 6.596 16 C -0.127 4.127 17 C -0.096 4.096 18 C -0.101 4.101 19 C -0.114 4.114 20 C 0.483 3.517 21 O -0.555 6.555 22 O -0.517 6.517 23 C 0.124 3.876 24 H 0.271 0.729 25 H 0.378 0.622 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.426 0.574 39 H 0.070 0.930 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 -18.372 -6.499 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.165 4.165 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.602 4.602 8 H 0.072 0.928 9 C 0.192 3.808 10 O -0.402 6.402 11 C -0.166 4.166 12 C -0.016 4.016 13 N -0.346 5.346 14 C 0.305 3.695 15 O -0.478 6.478 16 C -0.166 4.166 17 C -0.134 4.134 18 C -0.139 4.139 19 C -0.151 4.151 20 C 0.328 3.672 21 O -0.447 6.447 22 O -0.330 6.330 23 C 0.001 3.999 24 H 0.081 0.919 25 H 0.227 0.773 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.287 0.713 39 H 0.088 0.912 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.761 -18.725 -6.093 19.770 hybrid contribution -0.313 1.380 -0.129 1.421 sum -2.074 -17.345 -6.222 18.544 Atomic orbital electron populations 1.69774 1.06580 1.28424 1.49651 1.25602 0.95863 1.01963 0.93045 0.85600 0.78477 0.78838 0.78616 1.19615 1.20420 1.20439 1.21646 0.93548 0.91702 1.53274 0.92815 1.19792 0.87648 0.90676 0.82635 1.86123 1.54242 1.53646 1.46174 1.22949 1.01644 0.92756 0.99245 1.22211 0.88493 0.93921 0.96997 1.48765 1.27511 1.05318 1.53005 1.21254 0.86393 0.81769 0.80091 1.90627 1.32461 1.78919 1.45745 1.21685 0.98816 0.93193 1.02899 1.21250 0.99277 0.91416 1.01442 1.21348 0.99152 0.91538 1.01861 1.21455 0.99077 0.90952 1.03620 1.23894 0.84317 0.82612 0.76416 1.90727 1.31255 1.80540 1.42147 1.84520 1.57154 1.18306 1.73058 1.22101 0.94017 0.86974 0.96814 0.91941 0.77304 0.90677 0.92033 0.90789 0.89154 0.87520 0.86723 0.91283 0.91812 0.91206 0.90856 0.85755 0.85991 0.71289 0.91151 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.80 10.73 21.45 0.23 -45.57 16 2 C 0.04 1.87 5.27 84.66 0.45 2.31 16 3 Si 0.96 40.83 29.54 68.60 2.03 42.86 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.56 -29.46 8.27 25.60 0.21 -29.25 16 8 H 0.05 2.83 7.79 -2.91 -0.02 2.81 16 9 C 0.23 11.22 0.88 -10.15 -0.01 11.21 16 10 O -0.59 -30.38 13.18 -148.98 -1.96 -32.34 16 11 C -0.13 -5.29 5.38 31.78 0.17 -5.12 16 12 C 0.11 3.50 6.49 86.73 0.56 4.06 16 13 N -0.61 -23.34 3.33 -811.79 -2.70 -26.04 16 14 C 0.51 18.09 7.85 87.66 0.69 18.78 16 15 O -0.60 -25.30 16.24 -3.03 -0.05 -25.35 16 16 C -0.13 -2.92 4.89 29.85 0.15 -2.77 16 17 C -0.10 -1.91 4.50 30.59 0.14 -1.77 16 18 C -0.10 -1.59 4.50 30.59 0.14 -1.45 16 19 C -0.11 -1.41 5.81 29.85 0.17 -1.24 16 20 C 0.48 7.59 8.33 71.24 0.59 8.18 16 21 O -0.56 -12.78 16.74 21.96 0.37 -12.41 16 22 O -0.52 -5.73 13.42 -51.45 -0.69 -6.42 16 23 C 0.12 5.61 6.08 86.85 0.53 6.14 16 24 H 0.27 13.10 8.31 -92.70 -0.77 12.33 16 25 H 0.38 19.30 7.51 -74.05 -0.56 18.74 16 26 H 0.07 3.28 7.54 -2.39 -0.02 3.26 16 27 H 0.06 2.59 8.03 -2.39 -0.02 2.57 16 28 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 33 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 34 H 0.07 1.17 8.10 -2.38 -0.02 1.15 16 35 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 36 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.43 1.41 9.10 -74.06 -0.67 0.73 16 39 H 0.07 3.12 8.03 -2.38 -0.02 3.10 16 40 H 0.04 2.17 8.04 -2.38 -0.02 2.16 16 Total: -1.00 -67.74 338.35 0.84 -66.90 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -0.17 Total: 29.30 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 3.79 Total: 9.08 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -2.47 Total: -71.61 kcal Atomic # 8 Polarization: -74.19 SS G_CDS: -2.34 Total: -76.53 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -67.74 0.84 -66.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605718.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.769 kcal (2) G-P(sol) polarization free energy of solvation -67.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds