Wall clock time and date at job start Tue Mar 31 2020 05:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00123 * 2 1 4 4 H 1.48499 * 109.47506 * 265.91406 * 3 2 1 5 5 H 1.48503 * 109.47196 * 25.91487 * 3 2 1 6 6 H 1.48508 * 109.47358 * 145.91270 * 3 2 1 7 7 C 1.37883 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00138 * 354.29267 * 7 2 1 9 9 C 1.50699 * 119.99921 * 174.28615 * 7 2 1 10 10 O 1.42906 * 110.91777 * 325.06541 * 9 7 2 11 11 C 1.55147 * 111.00588 * 201.15994 * 9 7 2 12 12 C 1.54322 * 102.94317 * 206.42880 * 11 9 7 13 13 N 1.47016 * 107.27426 * 22.18862 * 12 11 9 14 14 C 1.34776 * 125.65396 * 181.09348 * 13 12 11 15 15 O 1.21277 * 120.00222 * 179.97438 * 14 13 12 16 16 C 1.50708 * 119.99620 * 359.96498 * 14 13 12 17 17 C 1.53001 * 109.47039 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47221 * 179.97438 * 17 16 14 19 19 C 1.52993 * 109.47286 * 179.97438 * 18 17 16 20 20 C 1.50695 * 109.47373 * 179.97438 * 19 18 17 21 21 O 1.20832 * 119.99844 * 0.02562 * 20 19 18 22 22 O 1.34229 * 120.00434 * 180.02562 * 20 19 18 23 23 C 1.47430 * 108.70225 * 1.06586 * 13 12 11 24 24 H 0.97000 * 119.99637 * 0.02562 * 1 2 3 25 25 H 0.96693 * 113.99409 * 297.87582 * 10 9 7 26 26 H 1.09008 * 110.72271 * 324.78987 * 11 9 7 27 27 H 1.09001 * 110.72287 * 88.06438 * 11 9 7 28 28 H 1.09006 * 109.88333 * 262.77431 * 12 11 9 29 29 H 1.09001 * 110.01321 * 141.68148 * 12 11 9 30 30 H 1.08997 * 109.47117 * 299.99651 * 16 14 13 31 31 H 1.09000 * 109.46840 * 59.99762 * 16 14 13 32 32 H 1.08997 * 109.47145 * 299.99958 * 17 16 14 33 33 H 1.09002 * 109.47248 * 59.99777 * 17 16 14 34 34 H 1.09003 * 109.46639 * 300.00071 * 18 17 16 35 35 H 1.09002 * 109.47171 * 59.99755 * 18 17 16 36 36 H 1.08997 * 109.47307 * 300.00121 * 19 18 17 37 37 H 1.09002 * 109.47022 * 59.99901 * 19 18 17 38 38 H 0.96696 * 117.00209 * 180.02562 * 22 20 19 39 39 H 1.08996 * 110.36335 * 217.03274 * 23 13 12 40 40 H 1.08997 * 110.45940 * 94.75562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5831 1.9965 -1.3965 5 1 1.4061 2.6760 0.6119 6 1 3.5009 1.4666 0.7847 7 6 2.0045 -1.1941 0.0005 8 1 1.4686 -2.1270 0.0940 9 6 3.5059 -1.1974 -0.1294 10 8 3.9460 -0.1440 -0.9889 11 6 4.0178 -2.5739 -0.6297 12 6 5.4529 -2.6349 -0.0655 13 7 5.5132 -1.7094 1.0752 14 6 6.6035 -1.4591 1.8269 15 8 6.5377 -0.6723 2.7475 16 6 7.9043 -2.1570 1.5235 17 6 8.9733 -1.6977 2.5171 18 6 10.2938 -2.4068 2.2096 19 6 11.3629 -1.9470 3.2027 20 6 12.6633 -2.6458 2.9002 21 8 12.7284 -3.4308 1.9839 22 8 13.7493 -2.3963 3.6486 23 6 4.1836 -1.0999 1.2602 24 1 -0.4849 0.8401 -0.0004 25 1 3.6209 -0.2156 -1.8968 26 1 3.4093 -3.3824 -0.2242 27 1 4.0299 -2.6082 -1.7191 28 1 6.1655 -2.3270 -0.8308 29 1 5.6804 -3.6479 0.2666 30 1 7.7670 -3.2349 1.6096 31 1 8.2209 -1.9108 0.5100 32 1 9.1105 -0.6199 2.4307 33 1 8.6568 -1.9435 3.5308 34 1 10.1561 -3.4846 2.2963 35 1 10.6104 -2.1614 1.1958 36 1 11.5003 -0.8693 3.1155 37 1 11.0464 -2.1921 4.2165 38 1 14.5606 -2.8683 3.4161 39 1 4.2830 -0.0571 1.5615 40 1 3.6098 -1.6553 2.0020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594605724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:08 Heat of formation + Delta-G solvation = -192.297456 kcal Electronic energy + Delta-G solvation = -22477.537102 eV Core-core repulsion = 18870.668014 eV Total energy + Delta-G solvation = -3606.869088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.57998 -39.68342 -37.73466 -36.62405 -35.33582 -34.71925 -32.40315 -31.38942 -30.15679 -28.54284 -26.46536 -24.68891 -22.85342 -21.91607 -20.90376 -19.85312 -18.78616 -18.39259 -17.53837 -16.81700 -16.71712 -16.63413 -15.84763 -15.35739 -14.95059 -14.81709 -14.41203 -13.98679 -13.72485 -13.47918 -12.85065 -12.84411 -12.56558 -12.28509 -12.10691 -11.92368 -11.87863 -11.72381 -11.59829 -11.46208 -11.32162 -10.90745 -10.88890 -10.74971 -10.60355 -10.32556 -10.21610 -9.49055 -9.23423 -8.62442 -8.56498 -8.09708 -6.23683 -4.36834 1.86320 2.68653 3.01202 3.42966 3.45684 3.54756 3.69814 4.43366 4.46500 4.63686 4.64619 4.86546 5.01180 5.05691 5.09486 5.15595 5.24651 5.32070 5.43372 5.48920 5.57761 5.60800 5.71229 5.75076 6.03796 6.06279 6.11646 6.13097 6.22849 6.50646 6.55980 6.67144 6.72957 6.98802 7.42353 7.53265 8.02600 8.09084 8.56267 8.62252 8.78644 9.37916 10.84990 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.038372 B = 0.002980 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.523454 B = 9392.431220 C = 9709.556916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.076 3.924 3 Si 0.940 3.060 4 H -0.289 1.289 5 H -0.322 1.322 6 H -0.266 1.266 7 C -0.554 4.554 8 H 0.082 0.918 9 C 0.218 3.782 10 O -0.562 6.562 11 C -0.148 4.148 12 C 0.104 3.896 13 N -0.613 5.613 14 C 0.520 3.480 15 O -0.553 6.553 16 C -0.135 4.135 17 C -0.104 4.104 18 C -0.110 4.110 19 C -0.114 4.114 20 C 0.477 3.523 21 O -0.517 6.517 22 O -0.520 6.520 23 C 0.111 3.889 24 H 0.268 0.732 25 H 0.371 0.629 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.409 0.591 39 H 0.078 0.922 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.438 -6.236 2.575 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.130 4.130 3 Si 0.774 3.226 4 H -0.217 1.217 5 H -0.253 1.253 6 H -0.192 1.192 7 C -0.591 4.591 8 H 0.100 0.900 9 C 0.177 3.823 10 O -0.369 6.369 11 C -0.186 4.186 12 C -0.019 4.019 13 N -0.346 5.346 14 C 0.309 3.691 15 O -0.432 6.432 16 C -0.175 4.175 17 C -0.142 4.142 18 C -0.148 4.148 19 C -0.152 4.152 20 C 0.320 3.680 21 O -0.405 6.405 22 O -0.332 6.332 23 C -0.011 4.011 24 H 0.077 0.923 25 H 0.219 0.781 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.267 0.733 39 H 0.096 0.904 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 21.241 -5.547 3.504 22.232 hybrid contribution 0.576 0.212 -0.767 0.982 sum 21.817 -5.335 2.737 22.626 Atomic orbital electron populations 1.69955 1.06792 1.27905 1.47340 1.25140 0.94905 1.00468 0.92439 0.85873 0.78180 0.80265 0.78238 1.21674 1.25285 1.19235 1.21168 0.88205 0.95366 1.54339 0.89995 1.20228 0.93467 0.82440 0.86152 1.86164 1.76267 1.50265 1.24229 1.23243 0.93480 1.01269 1.00632 1.22014 0.99328 0.92304 0.88258 1.48736 1.11098 1.43561 1.31197 1.20267 0.84523 0.82484 0.81859 1.90669 1.84954 1.36748 1.30845 1.21615 0.92968 1.01388 1.01514 1.21326 0.92262 1.00999 0.99572 1.21480 0.93187 1.01286 0.98802 1.21424 0.88637 1.01950 1.03166 1.23701 0.85845 0.79673 0.78759 1.90735 1.85192 1.34423 1.30157 1.84556 1.22150 1.67599 1.58906 1.22943 0.80255 0.99117 0.98748 0.92305 0.78075 0.90212 0.90708 0.92110 0.92342 0.89163 0.89130 0.90853 0.90857 0.90861 0.90864 0.87370 0.87380 0.73254 0.90409 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 2 C 0.08 2.10 5.46 -17.82 -0.10 2.00 16 3 Si 0.94 23.52 24.85 -169.99 -4.22 19.29 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.32 -8.27 7.11 56.52 0.40 -7.87 16 6 H -0.27 -6.83 5.22 56.52 0.30 -6.54 16 7 C -0.55 -14.35 8.87 -34.44 -0.31 -14.65 16 8 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 9 C 0.22 4.70 0.69 -89.63 -0.06 4.64 16 10 O -0.56 -12.02 8.88 -35.23 -0.31 -12.33 16 11 C -0.15 -2.52 6.14 -24.90 -0.15 -2.68 16 12 C 0.10 1.55 6.49 -3.07 -0.02 1.53 16 13 N -0.61 -11.23 3.33 -170.52 -0.57 -11.80 16 14 C 0.52 9.12 7.85 -10.98 -0.09 9.03 16 15 O -0.55 -11.73 16.24 5.56 0.09 -11.64 16 16 C -0.13 -1.61 4.89 -27.88 -0.14 -1.75 16 17 C -0.10 -1.09 4.50 -26.73 -0.12 -1.21 16 18 C -0.11 -0.93 4.50 -26.73 -0.12 -1.05 16 19 C -0.11 -0.80 5.81 -27.89 -0.16 -0.97 16 20 C 0.48 4.05 8.33 36.00 0.30 4.35 16 21 O -0.52 -6.08 16.74 -18.75 -0.31 -6.39 16 22 O -0.52 -3.32 13.42 -39.26 -0.53 -3.85 16 23 C 0.11 2.42 5.79 -2.52 -0.01 2.41 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.37 6.84 9.02 45.56 0.41 7.25 16 26 H 0.08 1.36 7.97 -51.92 -0.41 0.95 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 35 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.41 0.98 9.10 45.56 0.41 1.40 16 39 H 0.08 1.92 6.10 -51.93 -0.32 1.60 16 40 H 0.08 1.73 8.03 -51.93 -0.42 1.32 16 LS Contribution 332.08 15.07 5.00 5.00 Total: -1.00 -34.99 332.08 -5.68 -40.67 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.62 Total: 4.55 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.98 Total: 1.66 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.21 Total: -36.97 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -1.06 Total: -34.20 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -4.22 Total: 19.29 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.99 -5.68 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.632 kcal (2) G-P(sol) polarization free energy of solvation -34.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds