Wall clock time and date at job start Tue Mar 31 2020 05:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00123 * 2 1 4 4 H 1.48499 * 109.47506 * 265.91406 * 3 2 1 5 5 H 1.48503 * 109.47196 * 25.91487 * 3 2 1 6 6 H 1.48508 * 109.47358 * 145.91270 * 3 2 1 7 7 C 1.37883 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00138 * 354.29267 * 7 2 1 9 9 C 1.50699 * 119.99921 * 174.28615 * 7 2 1 10 10 O 1.42906 * 110.91777 * 325.06541 * 9 7 2 11 11 C 1.55147 * 111.00588 * 201.15994 * 9 7 2 12 12 C 1.54322 * 102.94317 * 206.42880 * 11 9 7 13 13 N 1.47016 * 107.27426 * 22.18862 * 12 11 9 14 14 C 1.34776 * 125.65396 * 181.09348 * 13 12 11 15 15 O 1.21277 * 120.00222 * 179.97438 * 14 13 12 16 16 C 1.50708 * 119.99620 * 359.96498 * 14 13 12 17 17 C 1.53001 * 109.47039 * 179.97438 * 16 14 13 18 18 C 1.53000 * 109.47221 * 179.97438 * 17 16 14 19 19 C 1.52993 * 109.47286 * 179.97438 * 18 17 16 20 20 C 1.50695 * 109.47373 * 179.97438 * 19 18 17 21 21 O 1.20832 * 119.99844 * 0.02562 * 20 19 18 22 22 O 1.34229 * 120.00434 * 180.02562 * 20 19 18 23 23 C 1.47430 * 108.70225 * 1.06586 * 13 12 11 24 24 H 0.97000 * 119.99637 * 0.02562 * 1 2 3 25 25 H 0.96693 * 113.99409 * 297.87582 * 10 9 7 26 26 H 1.09008 * 110.72271 * 324.78987 * 11 9 7 27 27 H 1.09001 * 110.72287 * 88.06438 * 11 9 7 28 28 H 1.09006 * 109.88333 * 262.77431 * 12 11 9 29 29 H 1.09001 * 110.01321 * 141.68148 * 12 11 9 30 30 H 1.08997 * 109.47117 * 299.99651 * 16 14 13 31 31 H 1.09000 * 109.46840 * 59.99762 * 16 14 13 32 32 H 1.08997 * 109.47145 * 299.99958 * 17 16 14 33 33 H 1.09002 * 109.47248 * 59.99777 * 17 16 14 34 34 H 1.09003 * 109.46639 * 300.00071 * 18 17 16 35 35 H 1.09002 * 109.47171 * 59.99755 * 18 17 16 36 36 H 1.08997 * 109.47307 * 300.00121 * 19 18 17 37 37 H 1.09002 * 109.47022 * 59.99901 * 19 18 17 38 38 H 0.96696 * 117.00209 * 180.02562 * 22 20 19 39 39 H 1.08996 * 110.36335 * 217.03274 * 23 13 12 40 40 H 1.08997 * 110.45940 * 94.75562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5831 1.9965 -1.3965 5 1 1.4061 2.6760 0.6119 6 1 3.5009 1.4666 0.7847 7 6 2.0045 -1.1941 0.0005 8 1 1.4686 -2.1270 0.0940 9 6 3.5059 -1.1974 -0.1294 10 8 3.9460 -0.1440 -0.9889 11 6 4.0178 -2.5739 -0.6297 12 6 5.4529 -2.6349 -0.0655 13 7 5.5132 -1.7094 1.0752 14 6 6.6035 -1.4591 1.8269 15 8 6.5377 -0.6723 2.7475 16 6 7.9043 -2.1570 1.5235 17 6 8.9733 -1.6977 2.5171 18 6 10.2938 -2.4068 2.2096 19 6 11.3629 -1.9470 3.2027 20 6 12.6633 -2.6458 2.9002 21 8 12.7284 -3.4308 1.9839 22 8 13.7493 -2.3963 3.6486 23 6 4.1836 -1.0999 1.2602 24 1 -0.4849 0.8401 -0.0004 25 1 3.6209 -0.2156 -1.8968 26 1 3.4093 -3.3824 -0.2242 27 1 4.0299 -2.6082 -1.7191 28 1 6.1655 -2.3270 -0.8308 29 1 5.6804 -3.6479 0.2666 30 1 7.7670 -3.2349 1.6096 31 1 8.2209 -1.9108 0.5100 32 1 9.1105 -0.6199 2.4307 33 1 8.6568 -1.9435 3.5308 34 1 10.1561 -3.4846 2.2963 35 1 10.6104 -2.1614 1.1958 36 1 11.5003 -0.8693 3.1155 37 1 11.0464 -2.1921 4.2165 38 1 14.5606 -2.8683 3.4161 39 1 4.2830 -0.0571 1.5615 40 1 3.6098 -1.6553 2.0020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:06 Heat of formation + Delta-G solvation = -220.191022 kcal Electronic energy + Delta-G solvation = -22478.746658 eV Core-core repulsion = 18870.668014 eV Total energy + Delta-G solvation = -3608.078644 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.24601 -41.07081 -39.25208 -37.23515 -36.35819 -36.09840 -34.48437 -32.44449 -31.46157 -30.08596 -27.72878 -26.16501 -24.15092 -22.80448 -21.58112 -21.49478 -20.13236 -19.44393 -19.00934 -18.06901 -17.44143 -17.38133 -17.19858 -16.88185 -16.38165 -16.25455 -15.80899 -15.40411 -14.88258 -14.44188 -14.38756 -14.09403 -13.90417 -13.64268 -13.49152 -13.28575 -13.16919 -12.67641 -12.54374 -12.52667 -12.36215 -12.26986 -12.15207 -12.10422 -11.92686 -11.58510 -11.50911 -11.26154 -10.89963 -10.67337 -10.33106 -9.55425 -8.39207 -6.51306 1.24931 1.41196 1.47548 1.65966 1.69336 2.04964 2.26498 2.37961 2.94478 3.40842 3.67066 3.78486 3.86584 4.00866 4.15896 4.26574 4.27610 4.37798 4.50712 4.53282 4.60813 4.73820 4.76378 4.81428 4.86483 4.90456 4.99502 5.05777 5.21614 5.26340 5.29811 5.34496 5.45171 5.55185 5.66845 6.04196 6.57522 6.67900 7.00422 7.02777 7.20860 7.29000 8.73531 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.038372 B = 0.002980 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.523454 B = 9392.431220 C = 9709.556916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.031 3.969 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.335 1.335 6 H -0.279 1.279 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.212 3.788 10 O -0.566 6.566 11 C -0.140 4.140 12 C 0.106 3.894 13 N -0.618 5.618 14 C 0.511 3.489 15 O -0.600 6.600 16 C -0.124 4.124 17 C -0.098 4.098 18 C -0.100 4.100 19 C -0.115 4.115 20 C 0.483 3.517 21 O -0.555 6.555 22 O -0.517 6.517 23 C 0.113 3.887 24 H 0.267 0.733 25 H 0.385 0.615 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.426 0.574 39 H 0.042 0.958 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.304 -7.360 1.645 25.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.170 4.170 3 Si 0.828 3.172 4 H -0.198 1.198 5 H -0.267 1.267 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.172 3.828 10 O -0.376 6.376 11 C -0.178 4.178 12 C -0.016 4.016 13 N -0.350 5.350 14 C 0.302 3.698 15 O -0.482 6.482 16 C -0.163 4.163 17 C -0.136 4.136 18 C -0.137 4.137 19 C -0.152 4.152 20 C 0.328 3.672 21 O -0.446 6.446 22 O -0.331 6.331 23 C -0.010 4.010 24 H 0.076 0.924 25 H 0.235 0.765 26 H 0.095 0.905 27 H 0.118 0.882 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.287 0.713 39 H 0.060 0.940 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 24.152 -6.697 2.545 25.192 hybrid contribution -0.287 0.516 -0.415 0.721 sum 23.865 -6.182 2.130 24.744 Atomic orbital electron populations 1.70053 1.08126 1.28402 1.50229 1.25755 0.95242 1.03078 0.92884 0.85000 0.76210 0.77376 0.78619 1.19832 1.26709 1.20568 1.21472 0.90838 0.93807 1.52040 0.92707 1.20102 0.90761 0.85357 0.86610 1.86107 1.75900 1.50393 1.25193 1.23151 0.94719 0.97596 1.02292 1.22235 0.98199 0.93480 0.87668 1.48836 1.09820 1.43935 1.32441 1.21365 0.85756 0.81910 0.80756 1.90646 1.85778 1.38884 1.32855 1.21684 0.89626 1.02161 1.02859 1.21264 0.92939 1.00524 0.98922 1.21338 0.92306 1.01004 0.99100 1.21462 0.87725 1.02542 1.03514 1.23873 0.86483 0.78827 0.78023 1.90725 1.85842 1.36192 1.31810 1.84520 1.22673 1.67603 1.58297 1.22535 0.82792 0.97183 0.98506 0.92374 0.76487 0.90507 0.88213 0.89382 0.88748 0.86444 0.86980 0.92010 0.91603 0.90730 0.90990 0.86102 0.85939 0.71266 0.93986 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.96 21.45 0.30 -55.66 16 2 C 0.03 1.74 5.46 84.66 0.46 2.21 16 3 Si 0.99 49.37 24.85 68.60 1.70 51.08 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.33 -17.21 7.11 99.48 0.71 -16.50 16 6 H -0.28 -14.37 5.22 99.48 0.52 -13.85 16 7 C -0.54 -28.48 8.87 25.60 0.23 -28.25 16 8 H 0.05 3.12 7.98 -2.91 -0.02 3.10 16 9 C 0.21 8.95 0.69 -10.15 -0.01 8.95 16 10 O -0.57 -23.17 8.88 -148.98 -1.32 -24.50 16 11 C -0.14 -4.34 6.14 31.78 0.20 -4.14 16 12 C 0.11 2.70 6.49 86.73 0.56 3.26 16 13 N -0.62 -21.39 3.33 -811.78 -2.70 -24.09 16 14 C 0.51 17.02 7.85 87.66 0.69 17.71 16 15 O -0.60 -25.44 16.24 -3.02 -0.05 -25.48 16 16 C -0.12 -2.53 4.89 29.85 0.15 -2.38 16 17 C -0.10 -1.84 4.50 30.59 0.14 -1.70 16 18 C -0.10 -1.42 4.50 30.59 0.14 -1.28 16 19 C -0.12 -1.34 5.81 29.84 0.17 -1.16 16 20 C 0.48 7.16 8.33 71.23 0.59 7.75 16 21 O -0.55 -12.07 16.74 21.95 0.37 -11.71 16 22 O -0.52 -5.40 13.42 -51.41 -0.69 -6.09 16 23 C 0.11 4.96 5.79 86.86 0.50 5.46 16 24 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 25 H 0.39 13.21 9.02 -74.06 -0.67 12.54 16 26 H 0.08 2.44 7.97 -2.38 -0.02 2.42 16 27 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 33 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 34 H 0.07 1.06 8.10 -2.39 -0.02 1.05 16 35 H 0.07 1.06 8.10 -2.39 -0.02 1.05 16 36 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.43 1.12 9.10 -74.06 -0.67 0.44 16 39 H 0.04 2.12 6.10 -2.39 -0.01 2.11 16 40 H 0.06 2.95 8.03 -2.39 -0.02 2.93 16 Total: -1.00 -78.42 332.08 0.96 -77.46 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -0.47 Total: 12.57 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 3.82 Total: 6.42 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -2.40 Total: -79.75 kcal Atomic # 8 Polarization: -66.09 SS G_CDS: -1.70 Total: -67.78 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 1.70 Total: 51.08 kcal Total: -78.42 0.96 -77.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.729 kcal (2) G-P(sol) polarization free energy of solvation -78.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds