Wall clock time and date at job start Tue Mar 31 2020 05:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00020 * 2 1 4 4 H 1.48500 * 109.47060 * 239.99820 * 3 2 1 5 5 H 1.48499 * 109.47323 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47459 * 119.99899 * 3 2 1 7 7 C 1.37880 * 119.99531 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99113 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46579 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47172 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99394 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00226 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99938 * 175.02794 * 13 11 10 15 15 C 1.53001 * 109.54521 * 303.06322 * 14 13 11 16 16 C 1.50700 * 109.46861 * 305.61037 * 15 14 13 17 17 O 1.20823 * 120.00368 * 6.14660 * 16 15 14 18 18 O 1.34226 * 119.99727 * 186.13896 * 16 15 14 19 19 C 1.53177 * 109.54377 * 63.24368 * 14 13 11 20 20 C 1.53100 * 109.16001 * 63.06350 * 19 14 13 21 21 O 1.42902 * 109.48780 * 57.47589 * 20 19 14 22 22 C 1.42899 * 114.09560 * 298.88829 * 21 20 19 23 23 C 1.53091 * 109.41481 * 61.16123 * 22 21 20 24 24 H 0.97003 * 119.99954 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46901 * 60.00394 * 9 7 2 26 26 H 1.08998 * 109.47347 * 299.99745 * 9 7 2 27 27 H 1.09003 * 109.47765 * 60.00072 * 10 9 7 28 28 H 1.08997 * 109.47777 * 299.99829 * 10 9 7 29 29 H 0.96998 * 120.00406 * 355.02515 * 13 11 10 30 30 H 1.08998 * 109.47043 * 65.60802 * 15 14 13 31 31 H 1.09001 * 109.47249 * 185.61179 * 15 14 13 32 32 H 0.96707 * 117.00182 * 179.97438 * 18 16 15 33 33 H 1.09001 * 109.52372 * 182.88600 * 19 14 13 34 34 H 1.09004 * 109.51815 * 303.06429 * 19 14 13 35 35 H 1.09002 * 109.40482 * 297.49417 * 20 19 14 36 36 H 1.08997 * 109.49094 * 177.51547 * 20 19 14 37 37 H 1.08999 * 109.48456 * 301.17665 * 22 21 20 38 38 H 1.09000 * 109.49077 * 181.14690 * 22 21 20 39 39 H 1.09004 * 109.52258 * 182.48325 * 23 22 21 40 40 H 1.08997 * 109.57923 * 62.32333 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 6 1.4916 -4.9672 0.0033 12 8 0.2788 -4.9672 0.0033 13 7 2.1655 -6.1344 0.0047 14 6 1.4370 -7.4006 0.1152 15 6 0.5923 -7.3956 1.3909 16 6 1.4731 -7.0913 2.5753 17 8 2.6306 -6.7893 2.4057 18 8 0.9716 -7.1558 3.8187 19 6 0.5246 -7.5748 -1.1028 20 6 1.3845 -7.6600 -2.3666 21 8 2.3101 -8.7416 -2.2416 22 6 3.2198 -8.6074 -1.1478 23 6 2.4338 -8.5626 0.1652 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8920 27 1 2.8718 -3.6036 0.8927 28 1 2.8718 -3.6052 -0.8872 29 1 3.1328 -6.1361 -0.0674 30 1 -0.1835 -6.6342 1.3100 31 1 0.1294 -8.3734 1.5241 32 1 1.5750 -6.9525 4.5466 33 1 -0.0550 -8.4917 -0.9956 34 1 -0.1508 -6.7225 -1.1768 35 1 1.9318 -6.7263 -2.4959 36 1 0.7435 -7.8282 -3.2320 37 1 3.7911 -7.6861 -1.2610 38 1 3.9010 -9.4582 -1.1348 39 1 3.1226 -8.4161 0.9973 40 1 1.8941 -9.5000 0.3000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:22 Heat of formation + Delta-G solvation = -184.729541 kcal Electronic energy + Delta-G solvation = -23933.876325 eV Core-core repulsion = 20327.335406 eV Total energy + Delta-G solvation = -3606.540919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.14665 -39.60831 -38.36373 -36.29092 -35.22881 -33.45017 -32.07263 -31.27581 -30.56873 -29.54681 -25.78191 -24.21455 -23.85868 -22.03635 -21.37550 -19.92281 -19.11459 -18.08566 -17.09491 -16.71050 -16.29682 -16.16499 -15.97250 -15.49417 -15.19820 -15.01588 -14.56627 -14.42135 -13.69045 -13.34342 -13.13371 -12.92106 -12.55705 -12.44476 -12.31538 -12.09646 -11.90131 -11.60442 -11.38852 -11.15845 -10.93007 -10.89963 -10.62435 -10.61391 -10.35084 -9.94238 -9.73709 -9.61414 -9.14579 -8.92891 -8.74064 -8.31581 -5.96175 -4.00284 2.22710 2.98968 3.19215 3.34518 3.38943 3.40518 3.50561 3.77751 4.40960 4.44915 4.48069 4.72393 4.84942 5.03163 5.18341 5.21453 5.25561 5.38817 5.43003 5.55820 5.57436 5.67590 5.71801 5.80268 5.88046 5.94919 6.11251 6.24344 6.30158 6.49051 6.75943 6.90949 7.08066 7.73921 7.86112 7.87281 7.93211 8.06726 8.39315 8.76553 9.07879 9.63182 11.14710 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019177 B = 0.004536 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.698261 B = 6171.626290 C = 6888.717924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.040 3.960 10 C -0.131 4.131 11 C 0.514 3.486 12 O -0.538 6.538 13 N -0.723 5.723 14 C 0.194 3.806 15 C -0.130 4.130 16 C 0.483 3.517 17 O -0.507 6.507 18 O -0.520 6.520 19 C -0.166 4.166 20 C 0.065 3.935 21 O -0.385 6.385 22 C 0.064 3.936 23 C -0.164 4.164 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.021 0.979 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.400 0.600 30 H 0.131 0.869 31 H 0.107 0.893 32 H 0.408 0.592 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 -20.176 1.604 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.003 3.997 10 C -0.171 4.171 11 C 0.303 3.697 12 O -0.414 6.414 13 N -0.377 5.377 14 C 0.107 3.893 15 C -0.168 4.168 16 C 0.325 3.675 17 O -0.395 6.395 18 O -0.332 6.332 19 C -0.204 4.204 20 C -0.012 4.012 21 O -0.303 6.303 22 C -0.013 4.013 23 C -0.202 4.202 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.235 0.765 30 H 0.149 0.851 31 H 0.125 0.875 32 H 0.266 0.734 33 H 0.095 0.905 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.460 -20.204 1.119 20.529 hybrid contribution 1.298 1.331 0.835 2.038 sum 4.758 -18.874 1.954 19.562 Atomic orbital electron populations 1.69986 1.06035 1.26665 1.50212 1.25011 0.94821 0.99177 0.95290 0.86657 0.79556 0.83191 0.78553 1.20248 1.21271 1.20283 1.21195 0.92896 0.91078 1.51406 0.92736 1.18862 0.93083 0.89344 0.98441 1.21865 1.00746 0.92034 1.02433 1.21512 0.88602 0.85658 0.73918 1.90579 1.14323 1.87619 1.48908 1.46229 1.10408 1.04558 1.76478 1.19947 0.91730 0.84917 0.92717 1.21910 0.99619 1.06148 0.89147 1.23371 0.87253 0.72962 0.83895 1.90665 1.19029 1.43719 1.86037 1.84542 1.48611 1.82753 1.17292 1.22618 0.99169 1.04452 0.94210 1.22537 0.91192 0.90041 0.97397 1.87910 1.47430 1.45604 1.49387 1.22513 0.91437 1.02012 0.85382 1.22602 0.99595 0.97953 1.00036 0.92924 0.95831 0.96025 0.90302 0.90452 0.76454 0.85073 0.87506 0.73373 0.90469 0.87863 0.92693 0.88724 0.92960 0.88762 0.89076 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.42 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -15.07 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.04 1.08 4.26 -27.88 -0.12 0.96 16 10 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 11 C 0.51 9.48 7.19 -10.99 -0.08 9.40 16 12 O -0.54 -11.41 12.28 5.56 0.07 -11.34 16 13 N -0.72 -10.11 2.53 -47.43 -0.12 -10.23 16 14 C 0.19 2.31 0.25 -131.63 -0.03 2.27 16 15 C -0.13 -1.56 4.52 -27.88 -0.13 -1.69 16 16 C 0.48 6.21 7.79 36.01 0.28 6.49 16 17 O -0.51 -7.33 13.95 -18.75 -0.26 -7.59 16 18 O -0.52 -5.68 13.42 -39.25 -0.53 -6.21 16 19 C -0.17 -1.97 4.81 -26.59 -0.13 -2.10 16 20 C 0.06 0.75 6.68 37.21 0.25 1.00 16 21 O -0.38 -4.48 10.77 -35.23 -0.38 -4.86 16 22 C 0.06 0.61 6.67 37.20 0.25 0.86 16 23 C -0.16 -1.58 4.69 -26.59 -0.12 -1.71 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 25 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.02 0.63 8.10 -51.93 -0.42 0.21 16 27 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.40 5.06 7.42 -40.82 -0.30 4.76 16 30 H 0.13 1.92 6.31 -51.93 -0.33 1.59 16 31 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.41 2.80 9.10 45.56 0.41 3.22 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.50 6.19 -51.93 -0.32 1.18 16 35 H 0.05 0.69 7.75 -51.93 -0.40 0.29 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.50 7.04 -51.93 -0.37 0.13 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.92 6.33 -51.93 -0.33 0.59 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 323.55 15.07 4.88 4.88 Total: -1.00 -34.57 323.55 -6.00 -40.57 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.98 Total: 5.81 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -0.40 Total: -1.13 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.62 Total: -36.91 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.10 Total: -29.99 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.57 -6.00 -40.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.157 kcal (2) G-P(sol) polarization free energy of solvation -34.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds