Wall clock time and date at job start Tue Mar 31 2020 05:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 120.00020 * 2 1 4 4 H 1.48500 * 109.47060 * 239.99820 * 3 2 1 5 5 H 1.48499 * 109.47323 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47459 * 119.99899 * 3 2 1 7 7 C 1.37880 * 119.99531 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99113 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00055 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46579 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47172 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99394 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00226 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99938 * 175.02794 * 13 11 10 15 15 C 1.53001 * 109.54521 * 303.06322 * 14 13 11 16 16 C 1.50700 * 109.46861 * 305.61037 * 15 14 13 17 17 O 1.20823 * 120.00368 * 6.14660 * 16 15 14 18 18 O 1.34226 * 119.99727 * 186.13896 * 16 15 14 19 19 C 1.53177 * 109.54377 * 63.24368 * 14 13 11 20 20 C 1.53100 * 109.16001 * 63.06350 * 19 14 13 21 21 O 1.42902 * 109.48780 * 57.47589 * 20 19 14 22 22 C 1.42899 * 114.09560 * 298.88829 * 21 20 19 23 23 C 1.53091 * 109.41481 * 61.16123 * 22 21 20 24 24 H 0.97003 * 119.99954 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46901 * 60.00394 * 9 7 2 26 26 H 1.08998 * 109.47347 * 299.99745 * 9 7 2 27 27 H 1.09003 * 109.47765 * 60.00072 * 10 9 7 28 28 H 1.08997 * 109.47777 * 299.99829 * 10 9 7 29 29 H 0.96998 * 120.00406 * 355.02515 * 13 11 10 30 30 H 1.08998 * 109.47043 * 65.60802 * 15 14 13 31 31 H 1.09001 * 109.47249 * 185.61179 * 15 14 13 32 32 H 0.96707 * 117.00182 * 179.97438 * 18 16 15 33 33 H 1.09001 * 109.52372 * 182.88600 * 19 14 13 34 34 H 1.09004 * 109.51815 * 303.06429 * 19 14 13 35 35 H 1.09002 * 109.40482 * 297.49417 * 20 19 14 36 36 H 1.08997 * 109.49094 * 177.51547 * 20 19 14 37 37 H 1.08999 * 109.48456 * 301.17665 * 22 21 20 38 38 H 1.09000 * 109.49077 * 181.14690 * 22 21 20 39 39 H 1.09004 * 109.52258 * 182.48325 * 23 22 21 40 40 H 1.08997 * 109.57923 * 62.32333 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0027 11 6 1.4916 -4.9672 0.0033 12 8 0.2788 -4.9672 0.0033 13 7 2.1655 -6.1344 0.0047 14 6 1.4370 -7.4006 0.1152 15 6 0.5923 -7.3956 1.3909 16 6 1.4731 -7.0913 2.5753 17 8 2.6306 -6.7893 2.4057 18 8 0.9716 -7.1558 3.8187 19 6 0.5246 -7.5748 -1.1028 20 6 1.3845 -7.6600 -2.3666 21 8 2.3101 -8.7416 -2.2416 22 6 3.2198 -8.6074 -1.1478 23 6 2.4338 -8.5626 0.1652 24 1 -0.4850 0.8401 -0.0004 25 1 0.6239 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8920 27 1 2.8718 -3.6036 0.8927 28 1 2.8718 -3.6052 -0.8872 29 1 3.1328 -6.1361 -0.0674 30 1 -0.1835 -6.6342 1.3100 31 1 0.1294 -8.3734 1.5241 32 1 1.5750 -6.9525 4.5466 33 1 -0.0550 -8.4917 -0.9956 34 1 -0.1508 -6.7225 -1.1768 35 1 1.9318 -6.7263 -2.4959 36 1 0.7435 -7.8282 -3.2320 37 1 3.7911 -7.6861 -1.2610 38 1 3.9010 -9.4582 -1.1348 39 1 3.1226 -8.4161 0.9973 40 1 1.8941 -9.5000 0.3000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594606035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:21 Heat of formation + Delta-G solvation = -210.230202 kcal Electronic energy + Delta-G solvation = -23934.982116 eV Core-core repulsion = 20327.335406 eV Total energy + Delta-G solvation = -3607.646710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.21150 -40.64962 -39.58978 -37.27417 -36.32694 -35.52571 -33.56988 -32.36942 -32.11072 -30.47123 -27.75360 -25.25782 -24.73570 -23.81653 -22.30153 -21.41709 -20.28936 -19.05522 -18.85613 -17.81561 -17.66081 -17.12170 -17.00903 -16.69008 -16.55857 -16.36107 -16.14825 -15.63864 -15.00243 -14.64158 -14.33827 -14.22060 -13.82870 -13.71031 -13.46063 -13.31697 -13.21663 -13.01473 -12.77469 -12.53698 -12.52025 -12.26546 -11.92530 -11.85202 -11.66277 -11.55788 -11.32191 -11.29432 -10.64980 -10.56915 -10.43158 -9.94920 -8.19340 -6.33160 1.22737 1.40386 1.44526 1.52393 1.72527 2.07668 2.28952 2.43916 2.94723 3.13405 3.51255 3.52978 3.80666 4.00850 4.07242 4.26236 4.33487 4.37167 4.41142 4.51308 4.51581 4.54783 4.71911 4.80000 4.84386 4.87147 5.02094 5.07538 5.08713 5.15355 5.46516 5.59833 5.62694 5.63113 5.83908 6.17408 6.23545 6.63406 6.84453 6.99970 7.35390 7.37872 8.92810 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019177 B = 0.004536 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.698261 B = 6171.626290 C = 6888.717924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.517 3.483 12 O -0.572 6.572 13 N -0.702 5.702 14 C 0.188 3.812 15 C -0.131 4.131 16 C 0.482 3.518 17 O -0.527 6.527 18 O -0.519 6.519 19 C -0.162 4.162 20 C 0.067 3.933 21 O -0.391 6.391 22 C 0.058 3.942 23 C -0.152 4.152 24 H 0.263 0.737 25 H -0.013 1.013 26 H -0.019 1.019 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.409 0.591 30 H 0.103 0.897 31 H 0.141 0.859 32 H 0.425 0.575 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.104 0.896 37 H 0.051 0.949 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.412 -21.410 1.811 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.088 0.912 9 C 0.012 3.988 10 C -0.163 4.163 11 C 0.305 3.695 12 O -0.451 6.451 13 N -0.355 5.355 14 C 0.102 3.898 15 C -0.169 4.169 16 C 0.325 3.675 17 O -0.416 6.416 18 O -0.333 6.333 19 C -0.200 4.200 20 C -0.010 4.010 21 O -0.310 6.310 22 C -0.019 4.019 23 C -0.190 4.190 24 H 0.072 0.928 25 H 0.005 0.995 26 H 0.000 1.000 27 H 0.107 0.893 28 H 0.115 0.885 29 H 0.246 0.754 30 H 0.121 0.879 31 H 0.159 0.841 32 H 0.286 0.714 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.122 0.878 37 H 0.069 0.931 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.469 -21.483 1.345 22.209 hybrid contribution 0.658 1.647 0.816 1.953 sum 6.127 -19.835 2.161 20.872 Atomic orbital electron populations 1.70157 1.08156 1.27867 1.51281 1.26079 0.95722 1.03721 0.94544 0.85413 0.78136 0.77568 0.79374 1.18763 1.21053 1.18951 1.21674 0.93799 0.91905 1.51112 0.91206 1.18612 0.93453 0.92044 0.94722 1.21620 0.99482 0.91287 1.03865 1.21033 0.87928 0.86296 0.74261 1.90585 1.15632 1.88120 1.50787 1.45989 1.10809 1.04228 1.74475 1.20213 0.92349 0.84399 0.92810 1.21928 0.98906 1.07087 0.89020 1.23488 0.86991 0.72480 0.84540 1.90651 1.19819 1.44713 1.86455 1.84504 1.49121 1.82334 1.17349 1.22551 0.98900 1.04173 0.94400 1.22490 0.91240 0.89603 0.97624 1.87911 1.47596 1.45272 1.50218 1.22716 0.91356 1.03134 0.84676 1.22546 0.98990 0.97381 1.00071 0.92804 0.99480 1.00042 0.89299 0.88462 0.75387 0.87904 0.84097 0.71365 0.88246 0.90915 0.94206 0.87759 0.93106 0.86353 0.89031 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.32 13.29 21.45 0.28 -59.04 16 2 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 3 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.55 -31.69 9.11 25.60 0.23 -31.46 16 8 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 9 C 0.05 2.77 4.26 29.85 0.13 2.89 16 10 C -0.12 -5.12 5.64 29.85 0.17 -4.95 16 11 C 0.52 19.47 7.19 87.66 0.63 20.10 16 12 O -0.57 -25.49 12.28 -3.03 -0.04 -25.52 16 13 N -0.70 -19.21 2.53 -422.38 -1.07 -20.28 16 14 C 0.19 4.23 0.25 3.72 0.00 4.23 16 15 C -0.13 -3.02 4.52 29.85 0.13 -2.88 16 16 C 0.48 11.77 7.79 71.24 0.55 12.32 16 17 O -0.53 -14.47 13.95 21.97 0.31 -14.17 16 18 O -0.52 -10.60 13.42 -51.38 -0.69 -11.29 16 19 C -0.16 -3.71 4.81 30.69 0.15 -3.56 16 20 C 0.07 1.49 6.68 72.02 0.48 1.97 16 21 O -0.39 -8.20 10.77 -148.98 -1.60 -9.80 16 22 C 0.06 0.94 6.67 72.01 0.48 1.42 16 23 C -0.15 -2.50 4.69 30.69 0.14 -2.35 16 24 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 25 H -0.01 -0.83 8.10 -2.39 -0.02 -0.85 16 26 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 27 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 28 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 29 H 0.41 9.78 7.42 -92.71 -0.69 9.09 16 30 H 0.10 3.08 6.31 -2.39 -0.02 3.06 16 31 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.42 5.17 9.10 -74.05 -0.67 4.50 16 33 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.07 2.18 6.19 -2.39 -0.01 2.16 16 35 H 0.04 0.99 7.75 -2.39 -0.02 0.97 16 36 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.05 0.85 7.04 -2.39 -0.02 0.83 16 38 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 1.58 6.33 -2.38 -0.02 1.56 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -77.11 323.55 2.49 -74.61 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -0.29 Total: 20.69 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 3.56 Total: -1.97 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -0.78 Total: -79.32 kcal Atomic # 8 Polarization: -58.75 SS G_CDS: -2.02 Total: -60.78 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -77.11 2.49 -74.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.617 kcal (2) G-P(sol) polarization free energy of solvation -77.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds