Wall clock time and date at job start Tue Mar 31 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99683 * 3 2 1 5 5 H 1.48505 * 109.47499 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47262 * 150.00006 * 3 2 1 7 7 C 1.37879 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47300 * 180.02562 * 10 9 7 12 12 O 1.20822 * 119.99851 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00138 * 179.97438 * 11 10 9 14 14 C 1.45198 * 116.99780 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46978 * 180.02562 * 14 13 11 16 16 H 1.09000 * 110.37066 * 175.90023 * 15 14 13 17 17 C 1.54377 * 110.41210 * 53.54259 * 15 14 13 18 18 C 1.54263 * 105.06515 * 217.36993 * 17 15 14 19 19 C 1.54383 * 105.05609 * 0.02562 * 18 17 15 20 20 N 1.48561 * 104.59532 * 23.85402 * 19 18 17 21 21 C 1.46901 * 110.99861 * 200.95924 * 20 19 18 22 22 C 1.50700 * 109.46899 * 285.41667 * 21 20 19 23 23 O 1.20827 * 120.00272 * 0.02562 * 22 21 20 24 24 O 1.34237 * 119.99713 * 180.02562 * 22 21 20 25 25 H 0.97005 * 119.99656 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 27 27 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 28 28 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 29 29 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 30 30 H 1.08997 * 109.47571 * 300.00009 * 14 13 11 31 31 H 1.08998 * 109.47370 * 60.00250 * 14 13 11 32 32 H 1.09000 * 110.32759 * 336.26935 * 17 15 14 33 33 H 1.09006 * 110.32219 * 98.37390 * 17 15 14 34 34 H 1.08998 * 110.32479 * 118.89255 * 18 17 15 35 35 H 1.08998 * 110.32503 * 241.10931 * 18 17 15 36 36 H 1.08998 * 110.41174 * 142.63338 * 19 18 17 37 37 H 1.09004 * 110.41449 * 264.95367 * 19 18 17 38 38 H 1.09000 * 109.47029 * 45.41829 * 21 20 19 39 39 H 1.08994 * 109.47013 * 165.41722 * 21 20 19 40 40 H 0.96700 * 116.99431 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5284 -2.6368 0.0022 12 8 6.1325 -1.5905 0.0036 13 8 6.1995 -3.7993 0.0028 14 6 7.6495 -3.7233 0.0034 15 6 8.2342 -5.1372 0.0035 16 1 9.3211 -5.0983 -0.0692 17 6 7.6460 -5.9631 -1.1606 18 6 7.4716 -7.3872 -0.5938 19 6 7.9686 -7.3017 0.8654 20 7 7.8193 -5.8689 1.2283 21 6 8.6812 -5.5215 2.3661 22 6 8.0904 -6.0831 3.6336 23 8 7.0577 -6.7090 3.5933 24 8 8.7116 -5.8880 4.8075 25 1 -0.4850 0.8401 -0.0004 26 1 3.8752 -0.6806 -0.8889 27 1 3.8745 -0.6801 0.8911 28 1 3.6577 -3.1507 0.8908 29 1 3.6583 -3.1503 -0.8892 30 1 7.9859 -3.1915 -0.8865 31 1 7.9851 -3.1910 0.8934 32 1 6.6816 -5.5559 -1.4644 33 1 8.3354 -5.9719 -2.0049 34 1 6.4217 -7.6789 -0.6192 35 1 8.0763 -8.0964 -1.1591 36 1 7.3524 -7.9244 1.5140 37 1 9.0136 -7.6051 0.9295 38 1 9.6748 -5.9419 2.2108 39 1 8.7543 -4.4371 2.4487 40 1 8.2948 -6.2677 5.5931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:17 Heat of formation + Delta-G solvation = -175.793046 kcal Electronic energy + Delta-G solvation = -22733.006693 eV Core-core repulsion = 19126.853290 eV Total energy + Delta-G solvation = -3606.153403 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68674 -40.02958 -38.92294 -36.32732 -35.98801 -33.56724 -32.80730 -31.50750 -30.80964 -27.53896 -26.68439 -25.16858 -22.29592 -21.94546 -21.04194 -20.35807 -19.68766 -18.26124 -17.54097 -16.93492 -16.67020 -16.32816 -16.15310 -15.95521 -15.74239 -14.81445 -14.52410 -14.10586 -13.79201 -13.74555 -13.29420 -12.81582 -12.72351 -12.62220 -12.47603 -12.15662 -11.85821 -11.62748 -11.43460 -11.41846 -11.08625 -10.98179 -10.76868 -10.66548 -10.33965 -10.25895 -10.10805 -9.88163 -9.65199 -9.21600 -8.87288 -8.52359 -6.03824 -4.03232 2.00115 2.55438 2.78225 3.08823 3.36341 3.43144 3.52718 3.59709 4.22477 4.42290 4.49187 4.60205 4.76006 4.80066 4.86366 4.97619 5.03072 5.15382 5.26420 5.30965 5.32583 5.44490 5.56307 5.67210 5.73727 5.91851 6.03781 6.07702 6.10658 6.26616 6.46236 6.49748 6.58782 6.88601 7.28546 7.36181 7.69539 7.75026 8.30520 8.51634 8.99282 9.58145 11.08920 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019854 B = 0.003557 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.989091 B = 7869.706546 C = 8345.106596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.526 4.526 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.095 4.095 11 C 0.457 3.543 12 O -0.518 6.518 13 O -0.342 6.342 14 C 0.077 3.923 15 C 0.065 3.935 16 H 0.075 0.925 17 C -0.119 4.119 18 C -0.120 4.120 19 C 0.031 3.969 20 N -0.484 5.484 21 C 0.049 3.951 22 C 0.477 3.523 23 O -0.490 6.490 24 O -0.523 6.523 25 H 0.264 0.736 26 H 0.020 0.980 27 H 0.025 0.975 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.538 -15.609 2.538 27.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.039 4.039 10 C -0.133 4.133 11 C 0.301 3.699 12 O -0.406 6.406 13 O -0.259 6.259 14 C 0.002 3.998 15 C -0.043 4.043 16 H 0.093 0.907 17 C -0.157 4.157 18 C -0.158 4.158 19 C -0.096 4.096 20 N -0.209 5.209 21 C -0.080 4.080 22 C 0.317 3.683 23 O -0.375 6.375 24 O -0.335 6.335 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.134 0.866 40 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 21.935 -15.066 2.355 26.715 hybrid contribution 1.104 0.616 0.449 1.342 sum 23.040 -14.450 2.804 27.340 Atomic orbital electron populations 1.69911 1.06271 1.27003 1.50793 1.24954 0.94713 0.99164 0.94288 0.86804 0.80587 0.83456 0.78739 1.20189 1.21347 1.18623 1.21056 0.88911 0.94794 1.51594 0.90638 1.19473 0.96853 0.89781 0.97799 1.21511 0.83654 1.03280 1.04832 1.24730 0.92788 0.81058 0.71306 1.90605 1.70743 1.33311 1.45937 1.86637 1.19906 1.35207 1.84178 1.22776 0.79221 0.95560 1.02198 1.22828 0.97606 0.93314 0.90571 0.90699 1.22303 1.02766 0.94642 0.96005 1.22249 1.02556 0.96743 0.94301 1.23247 0.99527 0.89359 0.97478 1.65117 1.48443 1.05125 1.02230 1.21731 0.95386 1.03108 0.87811 1.23172 0.82623 0.77474 0.84993 1.90752 1.22779 1.37206 1.86745 1.84492 1.56175 1.74552 1.18309 0.92647 0.96135 0.95699 0.88326 0.88448 0.90744 0.91646 0.89233 0.91066 0.90371 0.91314 0.89002 0.93998 0.90282 0.86582 0.72912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 22.45 27.47 -169.99 -4.67 17.78 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.64 6.54 56.52 0.37 -6.27 16 7 C -0.53 -15.11 9.66 -34.44 -0.33 -15.45 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C 0.00 -0.04 3.33 -27.88 -0.09 -0.13 16 10 C -0.10 -1.93 5.75 -27.88 -0.16 -2.09 16 11 C 0.46 8.68 7.96 36.00 0.29 8.97 16 12 O -0.52 -11.12 15.73 -18.75 -0.29 -11.42 16 13 O -0.34 -5.44 9.01 -39.26 -0.35 -5.80 16 14 C 0.08 0.94 5.26 37.16 0.20 1.14 16 15 C 0.06 0.60 2.68 -66.06 -0.18 0.42 16 16 H 0.08 0.50 8.00 -51.93 -0.42 0.09 16 17 C -0.12 -1.07 6.45 -25.35 -0.16 -1.23 16 18 C -0.12 -1.01 7.00 -25.35 -0.18 -1.19 16 19 C 0.03 0.29 5.92 -2.18 -0.01 0.27 16 20 N -0.48 -5.13 4.59 -223.54 -1.03 -6.16 16 21 C 0.05 0.42 5.38 -4.98 -0.03 0.40 16 22 C 0.48 4.94 8.18 36.01 0.29 5.23 16 23 O -0.49 -6.87 15.98 -18.75 -0.30 -7.17 16 24 O -0.52 -4.03 13.42 -39.27 -0.53 -4.56 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 27 H 0.02 0.64 7.16 -51.93 -0.37 0.27 16 28 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 29 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 30 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.07 0.80 7.24 -51.93 -0.38 0.42 16 32 H 0.09 0.98 6.99 -51.93 -0.36 0.62 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.99 7.24 -51.93 -0.38 0.61 16 37 H 0.04 0.30 7.76 -51.93 -0.40 -0.10 16 38 H 0.08 0.47 7.77 -51.93 -0.40 0.07 16 39 H 0.12 0.93 7.14 -51.93 -0.37 0.56 16 40 H 0.41 1.62 9.10 45.56 0.41 2.03 16 LS Contribution 335.01 15.07 5.05 5.05 Total: -1.00 -36.17 335.01 -6.99 -43.16 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -5.18 Total: -2.01 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -0.46 Total: -1.66 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: -0.25 Total: -33.37 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -1.48 Total: -28.95 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.17 -6.99 -43.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.634 kcal (2) G-P(sol) polarization free energy of solvation -36.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds