Wall clock time and date at job start Tue Mar 31 2020 05:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00192 * 2 1 4 4 H 1.48506 * 109.47200 * 269.99683 * 3 2 1 5 5 H 1.48505 * 109.47499 * 29.99744 * 3 2 1 6 6 H 1.48500 * 109.47262 * 150.00006 * 3 2 1 7 7 C 1.37879 * 119.99350 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99394 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46925 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47300 * 180.02562 * 10 9 7 12 12 O 1.20822 * 119.99851 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00138 * 179.97438 * 11 10 9 14 14 C 1.45198 * 116.99780 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.46978 * 180.02562 * 14 13 11 16 16 H 1.09000 * 110.37066 * 175.90023 * 15 14 13 17 17 C 1.54377 * 110.41210 * 53.54259 * 15 14 13 18 18 C 1.54263 * 105.06515 * 217.36993 * 17 15 14 19 19 C 1.54383 * 105.05609 * 0.02562 * 18 17 15 20 20 N 1.48561 * 104.59532 * 23.85402 * 19 18 17 21 21 C 1.46901 * 110.99861 * 200.95924 * 20 19 18 22 22 C 1.50700 * 109.46899 * 285.41667 * 21 20 19 23 23 O 1.20827 * 120.00272 * 0.02562 * 22 21 20 24 24 O 1.34237 * 119.99713 * 180.02562 * 22 21 20 25 25 H 0.97005 * 119.99656 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47318 * 299.99483 * 9 7 2 27 27 H 1.09000 * 109.47161 * 60.00114 * 9 7 2 28 28 H 1.09004 * 109.46930 * 299.99901 * 10 9 7 29 29 H 1.09004 * 109.47059 * 59.99503 * 10 9 7 30 30 H 1.08997 * 109.47571 * 300.00009 * 14 13 11 31 31 H 1.08998 * 109.47370 * 60.00250 * 14 13 11 32 32 H 1.09000 * 110.32759 * 336.26935 * 17 15 14 33 33 H 1.09006 * 110.32219 * 98.37390 * 17 15 14 34 34 H 1.08998 * 110.32479 * 118.89255 * 18 17 15 35 35 H 1.08998 * 110.32503 * 241.10931 * 18 17 15 36 36 H 1.08998 * 110.41174 * 142.63338 * 19 18 17 37 37 H 1.09004 * 110.41449 * 264.95367 * 19 18 17 38 38 H 1.09000 * 109.47029 * 45.41829 * 21 20 19 39 39 H 1.08994 * 109.47013 * 165.41722 * 21 20 19 40 40 H 0.96700 * 116.99431 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5284 -2.6368 0.0022 12 8 6.1325 -1.5905 0.0036 13 8 6.1995 -3.7993 0.0028 14 6 7.6495 -3.7233 0.0034 15 6 8.2342 -5.1372 0.0035 16 1 9.3211 -5.0983 -0.0692 17 6 7.6460 -5.9631 -1.1606 18 6 7.4716 -7.3872 -0.5938 19 6 7.9686 -7.3017 0.8654 20 7 7.8193 -5.8689 1.2283 21 6 8.6812 -5.5215 2.3661 22 6 8.0904 -6.0831 3.6336 23 8 7.0577 -6.7090 3.5933 24 8 8.7116 -5.8880 4.8075 25 1 -0.4850 0.8401 -0.0004 26 1 3.8752 -0.6806 -0.8889 27 1 3.8745 -0.6801 0.8911 28 1 3.6577 -3.1507 0.8908 29 1 3.6583 -3.1503 -0.8892 30 1 7.9859 -3.1915 -0.8865 31 1 7.9851 -3.1910 0.8934 32 1 6.6816 -5.5559 -1.4644 33 1 8.3354 -5.9719 -2.0049 34 1 6.4217 -7.6789 -0.6192 35 1 8.0763 -8.0964 -1.1591 36 1 7.3524 -7.9244 1.5140 37 1 9.0136 -7.6051 0.9295 38 1 9.6748 -5.9419 2.2108 39 1 8.7543 -4.4371 2.4487 40 1 8.2948 -6.2677 5.5931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594606273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:16 Heat of formation + Delta-G solvation = -201.954090 kcal Electronic energy + Delta-G solvation = -22734.141121 eV Core-core repulsion = 19126.853290 eV Total energy + Delta-G solvation = -3607.287831 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.61238 -41.21184 -39.75997 -37.43854 -36.99228 -35.61969 -33.50315 -33.44011 -31.77862 -28.49012 -28.21576 -26.22049 -23.74758 -22.94324 -21.71900 -21.56242 -20.97538 -19.34882 -19.01981 -18.30088 -17.70155 -17.53172 -17.14508 -16.97724 -16.49697 -16.29039 -15.90748 -15.57665 -14.97080 -14.76796 -14.42871 -14.15289 -14.04659 -13.87842 -13.37450 -13.24384 -13.11453 -12.90530 -12.60801 -12.32530 -12.23710 -12.15294 -12.01860 -11.93518 -11.79243 -11.55980 -11.49315 -11.45071 -11.37532 -11.27986 -10.78810 -9.52703 -8.31843 -6.36373 1.24122 1.27577 1.34595 1.36348 1.50617 1.78709 1.96165 2.34918 2.92645 3.03392 3.52789 3.65845 3.93945 3.98610 4.13330 4.19871 4.27549 4.30422 4.32404 4.37552 4.39946 4.41659 4.49027 4.68409 4.77063 4.86657 4.99577 5.07746 5.25048 5.26385 5.32465 5.36685 5.44237 5.59976 5.64288 5.83172 5.87749 6.21709 6.69492 6.88457 7.03489 7.28734 8.84037 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.019854 B = 0.003557 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.989091 B = 7869.706546 C = 8345.106596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.534 4.534 8 H 0.048 0.952 9 C 0.004 3.996 10 C -0.093 4.093 11 C 0.468 3.532 12 O -0.544 6.544 13 O -0.340 6.340 14 C 0.068 3.932 15 C 0.072 3.928 16 H 0.114 0.886 17 C -0.120 4.120 18 C -0.118 4.118 19 C 0.035 3.965 20 N -0.518 5.518 21 C 0.047 3.953 22 C 0.479 3.521 23 O -0.537 6.537 24 O -0.516 6.516 25 H 0.268 0.732 26 H 0.018 0.982 27 H 0.015 0.985 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.622 -15.656 2.194 30.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.572 4.572 8 H 0.066 0.934 9 C -0.033 4.033 10 C -0.130 4.130 11 C 0.314 3.686 12 O -0.435 6.435 13 O -0.256 6.256 14 C -0.006 4.006 15 C -0.036 4.036 16 H 0.132 0.868 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.092 4.092 20 N -0.244 5.244 21 C -0.081 4.081 22 C 0.321 3.679 23 O -0.426 6.426 24 O -0.330 6.330 25 H 0.077 0.923 26 H 0.037 0.963 27 H 0.034 0.966 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.131 0.869 39 H 0.141 0.859 40 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 25.046 -15.141 2.028 29.337 hybrid contribution 0.167 0.512 0.616 0.818 sum 25.213 -14.630 2.644 29.269 Atomic orbital electron populations 1.70033 1.07935 1.28244 1.52151 1.25830 0.95526 1.03008 0.94006 0.85781 0.79252 0.79066 0.79349 1.18991 1.20372 1.18246 1.21358 0.91024 0.93860 1.50941 0.93398 1.19298 0.94265 0.92704 0.97048 1.21284 0.85389 1.00505 1.05858 1.24177 0.92198 0.81431 0.70828 1.90592 1.71153 1.34334 1.47449 1.86610 1.22501 1.33230 1.83295 1.23213 0.76550 0.98094 1.02759 1.22885 0.99346 0.91170 0.90154 0.86832 1.22316 1.02086 0.94557 0.96818 1.22240 1.01894 0.97098 0.94362 1.23184 1.00526 0.88404 0.97098 1.64992 1.50205 1.05998 1.03223 1.21862 0.96401 1.03546 0.86328 1.23627 0.81872 0.76377 0.86015 1.90741 1.24860 1.39503 1.87448 1.84465 1.55836 1.74196 1.18481 0.92266 0.96336 0.96623 0.87851 0.87103 0.89794 0.91532 0.91872 0.88507 0.92329 0.88879 0.91467 0.91436 0.86868 0.85907 0.71145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.46 13.96 21.45 0.30 -59.16 16 2 C 0.01 0.84 5.47 84.66 0.46 1.30 16 3 Si 0.94 46.21 27.47 68.60 1.88 48.09 16 4 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 6 H -0.26 -12.45 6.54 99.48 0.65 -11.80 16 7 C -0.53 -31.19 9.66 25.60 0.25 -30.95 16 8 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 9 C 0.00 0.22 3.33 29.85 0.10 0.32 16 10 C -0.09 -3.75 5.75 29.85 0.17 -3.57 16 11 C 0.47 17.41 7.96 71.23 0.57 17.98 16 12 O -0.54 -22.82 15.73 21.98 0.35 -22.48 16 13 O -0.34 -10.46 9.01 -51.41 -0.46 -10.92 16 14 C 0.07 1.51 5.26 71.98 0.38 1.89 16 15 C 0.07 1.12 2.68 45.06 0.12 1.24 16 16 H 0.11 0.96 8.00 -2.39 -0.02 0.94 16 17 C -0.12 -1.85 6.45 31.49 0.20 -1.65 16 18 C -0.12 -1.76 7.00 31.49 0.22 -1.54 16 19 C 0.04 0.57 5.92 86.45 0.51 1.08 16 20 N -0.52 -9.94 4.59 -861.16 -3.95 -13.89 16 21 C 0.05 0.70 5.38 85.56 0.46 1.16 16 22 C 0.48 9.32 8.18 71.24 0.58 9.90 16 23 O -0.54 -15.12 15.98 21.96 0.35 -14.77 16 24 O -0.52 -7.08 13.42 -51.48 -0.69 -7.77 16 25 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 26 H 0.02 0.92 7.53 -2.39 -0.02 0.90 16 27 H 0.02 0.80 7.16 -2.39 -0.02 0.78 16 28 H 0.10 4.05 8.14 -2.38 -0.02 4.03 16 29 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 30 H 0.08 1.72 8.13 -2.39 -0.02 1.70 16 31 H 0.07 1.47 7.24 -2.39 -0.02 1.46 16 32 H 0.06 1.32 6.99 -2.39 -0.02 1.30 16 33 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.43 7.24 -2.39 -0.02 1.42 16 37 H 0.07 0.74 7.76 -2.38 -0.02 0.72 16 38 H 0.11 0.88 7.77 -2.39 -0.02 0.86 16 39 H 0.12 1.63 7.14 -2.39 -0.02 1.61 16 40 H 0.43 2.80 9.10 -74.06 -0.67 2.13 16 Total: -1.00 -79.02 335.01 2.12 -76.90 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 0.32 Total: 6.84 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 4.03 Total: -2.84 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -3.65 Total: -73.05 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -0.46 Total: -55.93 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.88 Total: 48.09 kcal Total: -79.02 2.12 -76.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.059 kcal (2) G-P(sol) polarization free energy of solvation -79.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds