Wall clock time and date at job start Tue Mar 31 2020 05:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47149 * 179.97438 * 10 9 7 12 12 O 1.20829 * 119.99774 * 0.02562 * 11 10 9 13 13 O 1.34223 * 120.00075 * 179.97438 * 11 10 9 14 14 C 1.45195 * 117.00227 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47519 * 180.02562 * 14 13 11 16 16 H 1.08997 * 109.90656 * 185.69927 * 15 14 13 17 17 C 1.53996 * 109.91493 * 306.80458 * 15 14 13 18 18 C 1.54596 * 105.13889 * 120.57754 * 17 15 14 19 19 C 1.54944 * 102.92196 * 21.95394 * 18 17 15 20 20 N 1.47900 * 109.91673 * 64.59910 * 15 14 13 21 21 C 1.46901 * 111.00304 * 94.80302 * 20 15 14 22 22 C 1.50701 * 109.47182 * 170.00017 * 21 20 15 23 23 O 1.20828 * 120.00104 * 0.02562 * 22 21 20 24 24 O 1.34223 * 119.99872 * 180.02562 * 22 21 20 25 25 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 27 27 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 28 28 H 1.08993 * 109.47110 * 300.00135 * 10 9 7 29 29 H 1.09006 * 109.46692 * 60.00091 * 10 9 7 30 30 H 1.09002 * 109.47427 * 300.00494 * 14 13 11 31 31 H 1.09008 * 109.47491 * 60.00021 * 14 13 11 32 32 H 1.09000 * 110.30929 * 239.48967 * 17 15 14 33 33 H 1.08993 * 110.30593 * 1.56080 * 17 15 14 34 34 H 1.08996 * 110.72887 * 140.31569 * 18 17 15 35 35 H 1.09005 * 110.72338 * 263.41960 * 18 17 15 36 36 H 1.08996 * 110.66423 * 81.02747 * 19 18 17 37 37 H 1.08998 * 110.66548 * 203.98648 * 19 18 17 38 38 H 1.08996 * 109.46794 * 290.00150 * 21 20 15 39 39 H 1.08997 * 109.46708 * 50.00417 * 21 20 15 40 40 H 0.96699 * 116.99978 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9672 0.0001 12 8 0.2837 -4.9671 0.0000 13 8 2.1631 -6.1296 -0.0003 14 6 1.3724 -7.3473 -0.0002 15 6 2.3044 -8.5607 -0.0001 16 1 1.7217 -9.4762 -0.1018 17 6 3.3118 -8.4484 -1.1593 18 6 4.7037 -8.4527 -0.4865 19 6 4.4249 -9.1234 0.8821 20 7 3.0843 -8.5968 1.2561 21 6 2.4353 -9.4574 2.2541 22 6 3.3682 -9.6675 3.4189 23 8 4.4613 -9.1526 3.4180 24 8 2.9847 -10.4265 4.4574 25 1 -0.4850 -0.8401 0.0004 26 1 0.6247 -2.5570 0.8897 27 1 0.6242 -2.5567 -0.8903 28 1 2.8720 -3.6043 -0.8904 29 1 2.8720 -3.6042 0.8895 30 1 0.7437 -7.3724 0.8899 31 1 0.7432 -7.3721 -0.8901 32 1 3.2134 -9.3019 -1.8302 33 1 3.1571 -7.5184 -1.7062 34 1 5.4116 -9.0429 -1.0682 35 1 5.0705 -7.4350 -0.3527 36 1 4.3944 -10.2081 0.7798 37 1 5.1757 -8.8284 1.6151 38 1 1.5192 -8.9815 2.6036 39 1 2.1954 -10.4201 1.8027 40 1 3.6171 -10.5318 5.1814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:20 Heat of formation + Delta-G solvation = -180.075125 kcal Electronic energy + Delta-G solvation = -22678.455296 eV Core-core repulsion = 19072.116208 eV Total energy + Delta-G solvation = -3606.339088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.86179 -40.00975 -38.85739 -36.47181 -35.91523 -33.85187 -32.78056 -31.27584 -30.53621 -27.54771 -26.04706 -24.79994 -22.39279 -22.18631 -21.26502 -20.44332 -19.82666 -18.36214 -17.42500 -17.03980 -16.50013 -16.33233 -16.19317 -15.99663 -15.63022 -14.90203 -14.53568 -13.78979 -13.70796 -13.65548 -13.33761 -12.97600 -12.84330 -12.46852 -12.15048 -12.05206 -11.89244 -11.76764 -11.55462 -11.35646 -11.10579 -10.81327 -10.76702 -10.43572 -10.29713 -10.13049 -10.11843 -10.03018 -9.78620 -8.79505 -8.57277 -8.29680 -6.33672 -4.04058 1.86664 2.49771 2.83626 3.13231 3.46844 3.51249 3.55384 3.64216 4.30414 4.48015 4.57764 4.62170 4.75161 4.82289 4.94433 4.96767 5.03917 5.24040 5.32413 5.37581 5.44345 5.49893 5.65598 5.73003 5.80726 5.96008 6.07812 6.08904 6.15119 6.24955 6.51341 6.53998 6.64005 6.94315 7.44981 7.49825 7.57532 8.15185 8.39220 8.49207 8.89892 9.69434 11.07487 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.003178 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.996392 B = 8809.721923 C = 9071.137301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.077 2.923 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.608 4.608 8 H 0.053 0.947 9 C 0.020 3.980 10 C -0.096 4.096 11 C 0.456 3.544 12 O -0.515 6.515 13 O -0.345 6.345 14 C 0.080 3.920 15 C 0.068 3.932 16 H 0.075 0.925 17 C -0.124 4.124 18 C -0.120 4.120 19 C 0.030 3.970 20 N -0.494 5.494 21 C 0.052 3.948 22 C 0.479 3.521 23 O -0.495 6.495 24 O -0.519 6.519 25 H 0.272 0.728 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.078 0.922 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.678 -24.981 2.399 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.905 3.095 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.646 4.646 8 H 0.071 0.929 9 C -0.017 4.017 10 C -0.133 4.133 11 C 0.300 3.700 12 O -0.403 6.403 13 O -0.262 6.262 14 C 0.005 3.995 15 C -0.040 4.040 16 H 0.093 0.907 17 C -0.162 4.162 18 C -0.158 4.158 19 C -0.096 4.096 20 N -0.220 5.220 21 C -0.077 4.077 22 C 0.320 3.680 23 O -0.382 6.382 24 O -0.332 6.332 25 H 0.083 0.917 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.096 0.904 40 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 7.172 -22.676 2.326 23.897 hybrid contribution 0.229 -2.748 0.267 2.770 sum 7.401 -25.424 2.592 26.606 Atomic orbital electron populations 1.70686 1.06931 1.30997 1.46123 1.25872 0.96552 1.02749 0.93704 0.83445 0.74402 0.74698 0.76953 1.21440 1.21329 1.21351 1.22047 0.94410 0.91655 1.56495 0.92871 1.19130 0.93907 0.91157 0.97481 1.21566 1.00264 0.87360 1.04158 1.24716 0.87796 0.86039 0.71447 1.90613 1.16044 1.87937 1.45674 1.86611 1.41120 1.14259 1.84248 1.22829 0.92456 0.82185 1.02059 1.22577 0.95366 0.96292 0.89720 0.90708 1.22383 0.94313 1.03064 0.96449 1.22463 0.96379 1.02205 0.94784 1.23583 0.91689 0.96336 0.98034 1.64702 1.02839 1.46588 1.07872 1.21854 0.96970 0.98348 0.90552 1.23208 0.86781 0.74781 0.83258 1.90706 1.22895 1.45897 1.78685 1.84499 1.51526 1.66042 1.31097 0.91730 0.96575 0.96585 0.88960 0.88828 0.91556 0.91053 0.91419 0.89713 0.91142 0.89909 0.94505 0.87243 0.86288 0.90436 0.72848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.76 13.65 55.43 0.76 -28.00 16 2 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 3 Si 1.08 25.66 29.90 -169.99 -5.08 20.58 16 4 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.61 -17.55 9.11 -34.44 -0.31 -17.87 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.55 3.57 -27.88 -0.10 0.45 16 10 C -0.10 -2.04 5.75 -27.88 -0.16 -2.20 16 11 C 0.46 9.14 7.96 36.00 0.29 9.43 16 12 O -0.51 -11.76 15.73 -18.75 -0.29 -12.06 16 13 O -0.35 -5.72 9.23 -39.24 -0.36 -6.08 16 14 C 0.08 1.04 5.21 37.16 0.19 1.23 16 15 C 0.07 0.68 2.88 -66.64 -0.19 0.49 16 16 H 0.08 0.55 7.57 -51.93 -0.39 0.16 16 17 C -0.12 -1.17 6.29 -25.37 -0.16 -1.33 16 18 C -0.12 -1.16 7.07 -24.87 -0.18 -1.33 16 19 C 0.03 0.31 5.31 -1.74 -0.01 0.30 16 20 N -0.49 -5.41 4.86 -223.77 -1.09 -6.49 16 21 C 0.05 0.44 5.63 -4.97 -0.03 0.41 16 22 C 0.48 4.55 8.04 36.01 0.29 4.84 16 23 O -0.50 -6.26 14.30 -18.75 -0.27 -6.53 16 24 O -0.52 -3.58 13.42 -39.24 -0.53 -4.11 16 25 H 0.27 8.68 7.22 -40.82 -0.29 8.39 16 26 H 0.02 0.46 7.97 -51.93 -0.41 0.05 16 27 H 0.02 0.45 7.97 -51.93 -0.41 0.04 16 28 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 29 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 30 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 31 H 0.07 0.89 8.13 -51.92 -0.42 0.46 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.92 7.16 -51.93 -0.37 0.55 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.32 8.02 -51.93 -0.42 -0.09 16 37 H 0.11 1.33 6.02 -51.93 -0.31 1.01 16 38 H 0.12 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.47 7.81 -51.93 -0.41 0.07 16 40 H 0.41 1.22 9.10 45.56 0.41 1.63 16 LS Contribution 336.40 15.07 5.07 5.07 Total: -1.00 -36.17 336.40 -7.45 -43.62 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -5.19 Total: -0.77 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -0.47 Total: -5.23 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: -0.33 Total: -34.49 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -1.45 Total: -28.77 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.17 -7.45 -43.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.456 kcal (2) G-P(sol) polarization free energy of solvation -36.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds