Wall clock time and date at job start Tue Mar 31 2020 05:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47149 * 179.97438 * 10 9 7 12 12 O 1.20829 * 119.99774 * 0.02562 * 11 10 9 13 13 O 1.34223 * 120.00075 * 179.97438 * 11 10 9 14 14 C 1.45195 * 117.00227 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47519 * 180.02562 * 14 13 11 16 16 H 1.08997 * 109.90656 * 185.69927 * 15 14 13 17 17 C 1.53996 * 109.91493 * 306.80458 * 15 14 13 18 18 C 1.54596 * 105.13889 * 120.57754 * 17 15 14 19 19 C 1.54944 * 102.92196 * 21.95394 * 18 17 15 20 20 N 1.47900 * 109.91673 * 64.59910 * 15 14 13 21 21 C 1.46901 * 111.00304 * 94.80302 * 20 15 14 22 22 C 1.50701 * 109.47182 * 170.00017 * 21 20 15 23 23 O 1.20828 * 120.00104 * 0.02562 * 22 21 20 24 24 O 1.34223 * 119.99872 * 180.02562 * 22 21 20 25 25 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 27 27 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 28 28 H 1.08993 * 109.47110 * 300.00135 * 10 9 7 29 29 H 1.09006 * 109.46692 * 60.00091 * 10 9 7 30 30 H 1.09002 * 109.47427 * 300.00494 * 14 13 11 31 31 H 1.09008 * 109.47491 * 60.00021 * 14 13 11 32 32 H 1.09000 * 110.30929 * 239.48967 * 17 15 14 33 33 H 1.08993 * 110.30593 * 1.56080 * 17 15 14 34 34 H 1.08996 * 110.72887 * 140.31569 * 18 17 15 35 35 H 1.09005 * 110.72338 * 263.41960 * 18 17 15 36 36 H 1.08996 * 110.66423 * 81.02747 * 19 18 17 37 37 H 1.08998 * 110.66548 * 203.98648 * 19 18 17 38 38 H 1.08996 * 109.46794 * 290.00150 * 21 20 15 39 39 H 1.08997 * 109.46708 * 50.00417 * 21 20 15 40 40 H 0.96699 * 116.99978 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9672 0.0001 12 8 0.2837 -4.9671 0.0000 13 8 2.1631 -6.1296 -0.0003 14 6 1.3724 -7.3473 -0.0002 15 6 2.3044 -8.5607 -0.0001 16 1 1.7217 -9.4762 -0.1018 17 6 3.3118 -8.4484 -1.1593 18 6 4.7037 -8.4527 -0.4865 19 6 4.4249 -9.1234 0.8821 20 7 3.0843 -8.5968 1.2561 21 6 2.4353 -9.4574 2.2541 22 6 3.3682 -9.6675 3.4189 23 8 4.4613 -9.1526 3.4180 24 8 2.9847 -10.4265 4.4574 25 1 -0.4850 -0.8401 0.0004 26 1 0.6247 -2.5570 0.8897 27 1 0.6242 -2.5567 -0.8903 28 1 2.8720 -3.6043 -0.8904 29 1 2.8720 -3.6042 0.8895 30 1 0.7437 -7.3724 0.8899 31 1 0.7432 -7.3721 -0.8901 32 1 3.2134 -9.3019 -1.8302 33 1 3.1571 -7.5184 -1.7062 34 1 5.4116 -9.0429 -1.0682 35 1 5.0705 -7.4350 -0.3527 36 1 4.3944 -10.2081 0.7798 37 1 5.1757 -8.8284 1.6151 38 1 1.5192 -8.9815 2.6036 39 1 2.1954 -10.4201 1.8027 40 1 3.6171 -10.5318 5.1814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594606274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:19 Heat of formation + Delta-G solvation = -206.057131 kcal Electronic energy + Delta-G solvation = -22679.581961 eV Core-core repulsion = 19072.116208 eV Total energy + Delta-G solvation = -3607.465752 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.71365 -41.33056 -39.74106 -37.51576 -37.02449 -35.99711 -33.50132 -33.09179 -31.68840 -28.24895 -27.76534 -26.15783 -24.27758 -22.96358 -21.98288 -21.78350 -20.99952 -19.23399 -19.04678 -18.31853 -17.83888 -17.58951 -17.26812 -17.00438 -16.45514 -16.07991 -15.64460 -15.62370 -14.95692 -14.77972 -14.45938 -14.10022 -14.05309 -13.79068 -13.58508 -13.36121 -13.07066 -12.71422 -12.69700 -12.50455 -12.16504 -12.11963 -12.10261 -11.98118 -11.85402 -11.60044 -11.50481 -11.45828 -11.17602 -10.76745 -10.56896 -9.50831 -8.70939 -6.42808 1.17062 1.21712 1.55170 1.65812 1.73969 1.82243 1.92488 2.59134 2.83633 3.15816 3.54395 3.63923 3.91725 3.96837 4.11433 4.18134 4.24051 4.26010 4.31156 4.32711 4.34383 4.37839 4.47476 4.64784 4.77080 4.80589 4.98673 5.06250 5.21705 5.22871 5.29952 5.31544 5.39950 5.64515 5.81338 5.87279 5.90775 6.16710 6.49941 6.83289 6.98681 7.41909 8.69585 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021836 B = 0.003178 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.996392 B = 8809.721923 C = 9071.137301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.042 4.042 3 Si 1.129 2.871 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.620 4.620 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.089 4.089 11 C 0.465 3.535 12 O -0.549 6.549 13 O -0.338 6.338 14 C 0.071 3.929 15 C 0.075 3.925 16 H 0.113 0.887 17 C -0.123 4.123 18 C -0.120 4.120 19 C 0.037 3.963 20 N -0.524 5.524 21 C 0.049 3.951 22 C 0.481 3.519 23 O -0.534 6.534 24 O -0.513 6.513 25 H 0.254 0.746 26 H -0.015 1.015 27 H -0.012 1.012 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.990 -26.510 2.107 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.239 4.239 3 Si 0.949 3.051 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.657 4.657 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.126 4.126 11 C 0.311 3.689 12 O -0.440 6.440 13 O -0.254 6.254 14 C -0.004 4.004 15 C -0.033 4.033 16 H 0.130 0.870 17 C -0.161 4.161 18 C -0.158 4.158 19 C -0.090 4.090 20 N -0.251 5.251 21 C -0.080 4.080 22 C 0.324 3.676 23 O -0.424 6.424 24 O -0.327 6.327 25 H 0.063 0.937 26 H 0.004 0.996 27 H 0.007 0.993 28 H 0.131 0.869 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.142 0.858 39 H 0.128 0.872 40 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 8.504 -24.268 2.053 25.797 hybrid contribution -0.193 -2.419 0.420 2.462 sum 8.311 -26.687 2.472 28.060 Atomic orbital electron populations 1.70843 1.08241 1.29883 1.48584 1.27627 0.96529 1.07291 0.92484 0.82805 0.74462 0.70371 0.77434 1.18633 1.20579 1.20454 1.22489 0.95247 0.92499 1.55476 0.91562 1.18950 0.94301 0.93337 0.94671 1.21313 0.99032 0.86478 1.05810 1.24285 0.86974 0.86865 0.70800 1.90604 1.17392 1.88555 1.47493 1.86582 1.41100 1.14418 1.83268 1.23263 0.93343 0.81479 1.02277 1.22615 0.95266 0.95784 0.89610 0.86978 1.22400 0.93789 1.03396 0.96487 1.22450 0.97098 1.01175 0.95061 1.23444 0.90865 0.97318 0.97345 1.64553 1.03466 1.48351 1.08725 1.21967 0.96452 0.99626 0.89923 1.23449 0.86255 0.74127 0.83745 1.90708 1.24543 1.47579 1.79541 1.84465 1.51946 1.65091 1.31168 0.93710 0.99649 0.99332 0.86916 0.87480 0.91891 0.90397 0.88572 0.91549 0.89122 0.92333 0.92610 0.89668 0.85804 0.87204 0.70918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.65 13.65 21.45 0.29 -60.36 16 2 C -0.04 -2.51 5.46 84.65 0.46 -2.05 16 3 Si 1.13 50.82 29.90 68.60 2.05 52.87 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.62 -35.93 9.11 25.60 0.23 -35.70 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.02 1.36 3.57 29.85 0.11 1.47 16 10 C -0.09 -3.79 5.75 29.85 0.17 -3.62 16 11 C 0.47 18.78 7.96 71.24 0.57 19.35 16 12 O -0.55 -25.72 15.73 21.95 0.35 -25.37 16 13 O -0.34 -10.98 9.23 -51.35 -0.47 -11.45 16 14 C 0.07 1.74 5.21 71.98 0.38 2.12 16 15 C 0.07 1.28 2.88 45.06 0.13 1.41 16 16 H 0.11 1.14 7.57 -2.39 -0.02 1.13 16 17 C -0.12 -2.01 6.29 31.47 0.20 -1.81 16 18 C -0.12 -2.11 7.07 31.80 0.22 -1.89 16 19 C 0.04 0.69 5.31 86.60 0.46 1.15 16 20 N -0.52 -10.49 4.86 -861.86 -4.19 -14.67 16 21 C 0.05 0.71 5.63 85.56 0.48 1.19 16 22 C 0.48 8.44 8.04 71.24 0.57 9.01 16 23 O -0.53 -13.28 14.30 21.96 0.31 -12.97 16 24 O -0.51 -6.08 13.42 -51.35 -0.69 -6.77 16 25 H 0.25 16.93 7.22 -92.71 -0.67 16.27 16 26 H -0.01 -0.90 7.97 -2.38 -0.02 -0.92 16 27 H -0.01 -0.70 7.97 -2.39 -0.02 -0.72 16 28 H 0.11 4.33 8.14 -2.39 -0.02 4.31 16 29 H 0.11 4.27 8.14 -2.38 -0.02 4.25 16 30 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 31 H 0.08 1.83 8.13 -2.38 -0.02 1.81 16 32 H 0.10 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.34 7.16 -2.39 -0.02 1.32 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.06 0.82 8.02 -2.39 -0.02 0.80 16 37 H 0.09 2.05 6.02 -2.39 -0.01 2.03 16 38 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.11 0.90 7.81 -2.39 -0.02 0.88 16 40 H 0.43 1.82 9.10 -74.06 -0.67 1.15 16 Total: -1.00 -80.40 336.40 2.11 -78.29 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.47 Total: 9.79 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 3.98 Total: -9.36 kcal Atomic # 7 Polarization: -71.14 SS G_CDS: -3.89 Total: -75.03 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -0.50 Total: -56.56 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 2.05 Total: 52.87 kcal Total: -80.40 2.11 -78.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.766 kcal (2) G-P(sol) polarization free energy of solvation -80.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds