Wall clock time and date at job start Tue Mar 31 2020 05:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99744 * 2 1 4 4 H 1.48502 * 109.46886 * 239.99885 * 3 2 1 5 5 H 1.48502 * 109.47727 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47306 * 120.00388 * 3 2 1 7 7 C 1.37873 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99680 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00453 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47442 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47113 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47248 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00215 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00352 * 0.02562 * 13 12 11 15 15 C 1.50705 * 120.00191 * 180.02562 * 13 12 11 16 16 C 1.50699 * 109.61549 * 300.22939 * 15 13 12 17 17 O 1.20824 * 119.99578 * 239.77987 * 16 15 13 18 18 O 1.34224 * 120.00053 * 59.77400 * 16 15 13 19 19 C 1.53175 * 109.53841 * 60.44820 * 15 13 12 20 20 C 1.53094 * 109.16661 * 62.89018 * 19 15 13 21 21 O 1.42898 * 109.41211 * 57.60371 * 20 19 15 22 22 C 1.42897 * 114.10001 * 298.84343 * 21 20 19 23 23 C 1.53089 * 109.41656 * 61.16248 * 22 21 20 24 24 H 0.97004 * 120.00203 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47366 * 59.99229 * 9 7 2 26 26 H 1.09004 * 109.46803 * 299.99944 * 9 7 2 27 27 H 1.09001 * 109.46744 * 59.99731 * 10 9 7 28 28 H 1.08996 * 109.47034 * 299.99940 * 10 9 7 29 29 H 1.09001 * 109.47366 * 60.00319 * 11 10 9 30 30 H 1.09004 * 109.47137 * 300.00274 * 11 10 9 31 31 H 0.97001 * 119.99668 * 0.02562 * 12 11 10 32 32 H 0.96702 * 117.00156 * 180.02562 * 18 16 15 33 33 H 1.09004 * 109.52259 * 182.79283 * 19 15 13 34 34 H 1.09006 * 109.52330 * 302.98117 * 19 15 13 35 35 H 1.09006 * 109.47665 * 297.62062 * 20 19 15 36 36 H 1.09002 * 109.48937 * 177.59283 * 20 19 15 37 37 H 1.09002 * 109.48425 * 301.17758 * 22 21 20 38 38 H 1.09001 * 109.49443 * 181.15303 * 22 21 20 39 39 H 1.08997 * 109.52675 * 182.48845 * 23 22 21 40 40 H 1.08995 * 109.52428 * 62.29514 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4322 -6.1006 0.0006 13 6 1.9830 -7.3712 0.0015 14 8 0.7906 -7.5929 0.0024 15 6 2.9623 -8.5167 0.0014 16 6 3.8335 -8.4375 -1.2257 17 8 3.8434 -9.3485 -2.0193 18 8 4.5983 -7.3549 -1.4370 19 6 3.8372 -8.4429 1.2566 20 6 2.9527 -8.6031 2.4959 21 8 2.2471 -9.8434 2.4187 22 6 1.3770 -9.9503 1.2902 23 6 2.1981 -9.8443 0.0025 24 1 -0.4851 0.8401 0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5566 0.8903 27 1 2.8719 -3.6042 0.8905 28 1 2.8719 -3.6043 -0.8894 29 1 0.8533 -5.0451 -0.8886 30 1 0.8539 -5.0445 0.8914 31 1 3.3859 -5.9233 0.0002 32 1 5.1399 -7.3495 -2.2381 33 1 4.5778 -9.2422 1.2319 34 1 4.3425 -7.4777 1.2921 35 1 2.2386 -7.7808 2.5416 36 1 3.5753 -8.5942 3.3906 37 1 0.6422 -9.1457 1.3201 38 1 0.8642 -10.9118 1.3162 39 1 1.5312 -9.8813 -0.8588 40 1 2.9056 -10.6718 -0.0475 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:26 Heat of formation + Delta-G solvation = -193.172283 kcal Electronic energy + Delta-G solvation = -23335.136649 eV Core-core repulsion = 19728.229625 eV Total energy + Delta-G solvation = -3606.907024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.70722 -39.75260 -38.40740 -36.58258 -35.58567 -34.31580 -33.34816 -31.55021 -31.02555 -27.56912 -26.39907 -24.01877 -23.56040 -22.56005 -21.81154 -20.74744 -19.41095 -18.53845 -17.65489 -17.12703 -16.49080 -16.24378 -15.86184 -15.84332 -15.28111 -15.02311 -14.81378 -14.49438 -14.08530 -13.96933 -13.79992 -13.21362 -12.72667 -12.54643 -12.31143 -11.95379 -11.90659 -11.85931 -11.64278 -11.30511 -11.14565 -10.92148 -10.79741 -10.69630 -10.65341 -10.14521 -9.93335 -9.69342 -9.40936 -9.17867 -8.93875 -8.40973 -6.05657 -4.09128 1.65244 2.19612 2.78530 3.10481 3.29205 3.34424 3.36071 3.65918 3.91576 4.18060 4.40466 4.48200 4.60478 4.78326 4.92514 5.13289 5.23436 5.24947 5.30185 5.41232 5.51162 5.57114 5.63779 5.67068 5.74772 5.88613 6.06079 6.08389 6.32760 6.50832 6.71631 6.92137 6.95371 7.44442 7.47895 7.58030 7.70017 7.92300 8.09747 8.33352 8.97198 9.55343 11.05551 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.003470 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.001551 B = 8068.297665 C = 8478.724145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.114 3.886 12 N -0.711 5.711 13 C 0.518 3.482 14 O -0.524 6.524 15 C -0.073 4.073 16 C 0.494 3.506 17 O -0.500 6.500 18 O -0.510 6.510 19 C -0.142 4.142 20 C 0.060 3.940 21 O -0.381 6.381 22 C 0.050 3.950 23 C -0.119 4.119 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.405 0.595 32 H 0.417 0.583 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 -18.725 1.631 20.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.008 4.008 12 N -0.362 5.362 13 C 0.301 3.699 14 O -0.401 6.401 15 C -0.077 4.077 16 C 0.335 3.665 17 O -0.386 6.386 18 O -0.323 6.323 19 C -0.180 4.180 20 C -0.017 4.017 21 O -0.300 6.300 22 C -0.026 4.026 23 C -0.157 4.157 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.241 0.759 32 H 0.278 0.722 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.036 -19.130 1.888 20.836 hybrid contribution 1.344 1.326 -0.948 2.113 sum 9.380 -17.804 0.940 20.146 Atomic orbital electron populations 1.69952 1.06073 1.26862 1.50360 1.25022 0.94851 0.99304 0.95206 0.86639 0.79566 0.83073 0.78598 1.20250 1.21255 1.20218 1.21149 0.92954 0.90908 1.51219 0.92676 1.19025 0.93816 0.90823 0.97669 1.21893 0.99791 0.93109 1.01045 1.21750 0.91806 0.84976 1.02239 1.46267 1.11567 1.05382 1.73027 1.19754 0.88754 0.83698 0.77651 1.90694 1.15857 1.84211 1.49344 1.20972 0.95122 0.98503 0.93152 1.22775 0.77923 0.79391 0.86415 1.90737 1.63702 1.38548 1.45621 1.84452 1.55410 1.43143 1.49250 1.22310 0.98265 1.04969 0.92420 1.22597 0.94625 0.87394 0.97086 1.87920 1.59395 1.36507 1.46134 1.22902 0.92168 1.04068 0.83476 1.21972 0.99845 0.92912 1.00957 0.92830 0.96298 0.96243 0.92602 0.92597 0.91544 0.91402 0.75932 0.72237 0.89158 0.88819 0.92420 0.87691 0.90020 0.88219 0.89106 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.23 5.27 -26.73 -0.14 -2.37 16 11 C 0.11 1.89 5.67 -4.04 -0.02 1.86 16 12 N -0.71 -9.50 5.20 -60.29 -0.31 -9.81 16 13 C 0.52 7.13 5.14 -10.98 -0.06 7.08 16 14 O -0.52 -8.81 13.84 5.55 0.08 -8.73 16 15 C -0.07 -0.80 0.58 -156.63 -0.09 -0.89 16 16 C 0.49 5.38 6.92 36.01 0.25 5.63 16 17 O -0.50 -6.65 16.72 -18.75 -0.31 -6.96 16 18 O -0.51 -4.08 11.81 -39.24 -0.46 -4.54 16 19 C -0.14 -1.22 4.79 -26.59 -0.13 -1.35 16 20 C 0.06 0.57 6.62 37.21 0.25 0.82 16 21 O -0.38 -4.34 10.76 -35.23 -0.38 -4.72 16 22 C 0.05 0.56 6.55 37.20 0.24 0.80 16 23 C -0.12 -1.32 3.88 -26.59 -0.10 -1.42 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.40 4.56 6.55 -40.82 -0.27 4.29 16 32 H 0.42 1.66 9.10 45.56 0.41 2.07 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.68 7.52 -51.93 -0.39 0.29 16 35 H 0.06 0.63 7.38 -51.93 -0.38 0.24 16 36 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.07 5.80 -51.93 -0.30 0.77 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.09 8.03 -51.93 -0.42 0.68 16 40 H 0.09 0.89 8.02 -51.93 -0.42 0.47 16 LS Contribution 329.18 15.07 4.96 4.96 Total: -1.00 -33.27 329.18 -6.18 -39.44 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.11 Total: 2.39 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -0.35 Total: -2.46 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.42 Total: -35.44 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -1.08 Total: -24.95 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.27 -6.18 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.731 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds