Wall clock time and date at job start Tue Mar 31 2020 05:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99744 * 2 1 4 4 H 1.48502 * 109.46886 * 239.99885 * 3 2 1 5 5 H 1.48502 * 109.47727 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47306 * 120.00388 * 3 2 1 7 7 C 1.37873 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99680 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00453 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47442 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47113 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.47248 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00215 * 179.97438 * 12 11 10 14 14 O 1.21284 * 120.00352 * 0.02562 * 13 12 11 15 15 C 1.50705 * 120.00191 * 180.02562 * 13 12 11 16 16 C 1.50699 * 109.61549 * 300.22939 * 15 13 12 17 17 O 1.20824 * 119.99578 * 239.77987 * 16 15 13 18 18 O 1.34224 * 120.00053 * 59.77400 * 16 15 13 19 19 C 1.53175 * 109.53841 * 60.44820 * 15 13 12 20 20 C 1.53094 * 109.16661 * 62.89018 * 19 15 13 21 21 O 1.42898 * 109.41211 * 57.60371 * 20 19 15 22 22 C 1.42897 * 114.10001 * 298.84343 * 21 20 19 23 23 C 1.53089 * 109.41656 * 61.16248 * 22 21 20 24 24 H 0.97004 * 120.00203 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47366 * 59.99229 * 9 7 2 26 26 H 1.09004 * 109.46803 * 299.99944 * 9 7 2 27 27 H 1.09001 * 109.46744 * 59.99731 * 10 9 7 28 28 H 1.08996 * 109.47034 * 299.99940 * 10 9 7 29 29 H 1.09001 * 109.47366 * 60.00319 * 11 10 9 30 30 H 1.09004 * 109.47137 * 300.00274 * 11 10 9 31 31 H 0.97001 * 119.99668 * 0.02562 * 12 11 10 32 32 H 0.96702 * 117.00156 * 180.02562 * 18 16 15 33 33 H 1.09004 * 109.52259 * 182.79283 * 19 15 13 34 34 H 1.09006 * 109.52330 * 302.98117 * 19 15 13 35 35 H 1.09006 * 109.47665 * 297.62062 * 20 19 15 36 36 H 1.09002 * 109.48937 * 177.59283 * 20 19 15 37 37 H 1.09002 * 109.48425 * 301.17758 * 22 21 20 38 38 H 1.09001 * 109.49443 * 181.15303 * 22 21 20 39 39 H 1.08997 * 109.52675 * 182.48845 * 23 22 21 40 40 H 1.08995 * 109.52428 * 62.29514 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4322 -6.1006 0.0006 13 6 1.9830 -7.3712 0.0015 14 8 0.7906 -7.5929 0.0024 15 6 2.9623 -8.5167 0.0014 16 6 3.8335 -8.4375 -1.2257 17 8 3.8434 -9.3485 -2.0193 18 8 4.5983 -7.3549 -1.4370 19 6 3.8372 -8.4429 1.2566 20 6 2.9527 -8.6031 2.4959 21 8 2.2471 -9.8434 2.4187 22 6 1.3770 -9.9503 1.2902 23 6 2.1981 -9.8443 0.0025 24 1 -0.4851 0.8401 0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5566 0.8903 27 1 2.8719 -3.6042 0.8905 28 1 2.8719 -3.6043 -0.8894 29 1 0.8533 -5.0451 -0.8886 30 1 0.8539 -5.0445 0.8914 31 1 3.3859 -5.9233 0.0002 32 1 5.1399 -7.3495 -2.2381 33 1 4.5778 -9.2422 1.2319 34 1 4.3425 -7.4777 1.2921 35 1 2.2386 -7.7808 2.5416 36 1 3.5753 -8.5942 3.3906 37 1 0.6422 -9.1457 1.3201 38 1 0.8642 -10.9118 1.3162 39 1 1.5312 -9.8813 -0.8588 40 1 2.9056 -10.6718 -0.0475 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609186.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:25 Heat of formation + Delta-G solvation = -217.992352 kcal Electronic energy + Delta-G solvation = -23336.212928 eV Core-core repulsion = 19728.229625 eV Total energy + Delta-G solvation = -3607.983303 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.62943 -40.68000 -39.38423 -37.39192 -36.99292 -35.40606 -35.00237 -33.03285 -32.08556 -28.96470 -27.67592 -25.21494 -24.81068 -23.38197 -22.98874 -22.33345 -20.50761 -19.39162 -18.54451 -18.51747 -17.98678 -17.14713 -17.03944 -16.80305 -16.46883 -16.40662 -16.01800 -15.73309 -15.31001 -14.96257 -14.71847 -14.25743 -14.15806 -13.76019 -13.52015 -13.47522 -13.42225 -12.73188 -12.70807 -12.55865 -12.44692 -12.41501 -12.20226 -11.95212 -11.67092 -11.62751 -11.48553 -11.25127 -10.99003 -10.53531 -10.52191 -10.17614 -8.18309 -6.29638 0.76959 1.24198 1.43178 1.45667 1.53503 1.87434 2.03103 2.43374 2.87610 3.05123 3.15830 3.35721 3.57451 3.81178 3.99476 4.16222 4.18578 4.20353 4.36347 4.41268 4.52495 4.55047 4.64719 4.73614 4.87495 4.89560 4.93504 4.94341 5.06296 5.17572 5.34826 5.40804 5.53007 5.71718 5.85362 6.13739 6.22901 6.37613 6.76189 6.87893 7.03054 7.40151 8.93496 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.003470 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.001551 B = 8068.297665 C = 8478.724145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.128 3.872 12 N -0.700 5.700 13 C 0.518 3.482 14 O -0.559 6.559 15 C -0.071 4.071 16 C 0.502 3.498 17 O -0.526 6.526 18 O -0.500 6.500 19 C -0.136 4.136 20 C 0.054 3.946 21 O -0.390 6.390 22 C 0.053 3.947 23 C -0.117 4.117 24 H 0.263 0.737 25 H -0.009 1.009 26 H -0.007 1.007 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.418 0.582 32 H 0.437 0.563 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.039 0.961 36 H 0.131 0.869 37 H 0.057 0.943 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.122 -18.820 1.923 22.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.352 5.352 13 C 0.303 3.697 14 O -0.437 6.437 15 C -0.075 4.075 16 C 0.343 3.657 17 O -0.415 6.415 18 O -0.315 6.315 19 C -0.174 4.174 20 C -0.023 4.023 21 O -0.309 6.309 22 C -0.024 4.024 23 C -0.155 4.155 24 H 0.071 0.929 25 H 0.009 0.991 26 H 0.012 0.988 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.257 0.743 32 H 0.301 0.699 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.058 0.942 36 H 0.149 0.851 37 H 0.075 0.925 38 H 0.134 0.866 39 H 0.094 0.906 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.937 -19.223 2.174 22.223 hybrid contribution 0.439 1.353 -1.041 1.762 sum 11.376 -17.870 1.133 21.214 Atomic orbital electron populations 1.70103 1.07946 1.27815 1.51701 1.25997 0.95693 1.03482 0.94812 0.85497 0.78203 0.78042 0.79279 1.19084 1.21354 1.18943 1.21653 0.93783 0.91969 1.50448 0.91437 1.18942 0.94447 0.92952 0.95088 1.21594 0.98427 0.91554 1.02342 1.21330 0.91841 0.85279 1.01068 1.46004 1.11703 1.04575 1.72925 1.20219 0.88823 0.84171 0.76497 1.90691 1.17664 1.84742 1.50642 1.20949 0.94893 0.96797 0.94870 1.22609 0.77809 0.79520 0.85742 1.90738 1.64755 1.39714 1.46306 1.84397 1.55060 1.41541 1.50477 1.22381 0.97870 1.06815 0.90324 1.22784 0.94570 0.86143 0.98787 1.87909 1.59498 1.37357 1.46134 1.22845 0.91833 1.04020 0.83666 1.21946 0.99856 0.93487 1.00235 0.92867 0.99089 0.98819 0.91008 0.91371 0.93123 0.92478 0.74322 0.69912 0.87251 0.86928 0.94244 0.85105 0.92470 0.86639 0.90618 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.25 13.29 21.45 0.28 -55.96 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 42.81 29.54 68.60 2.03 44.84 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.54 -29.29 9.11 25.60 0.23 -29.05 16 8 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.66 5.27 30.59 0.16 -3.50 16 11 C 0.13 4.22 5.67 86.38 0.49 4.71 16 12 N -0.70 -17.75 5.20 -463.05 -2.41 -20.16 16 13 C 0.52 13.92 5.14 87.66 0.45 14.37 16 14 O -0.56 -19.17 13.84 -3.04 -0.04 -19.21 16 15 C -0.07 -1.44 0.58 -53.55 -0.03 -1.48 16 16 C 0.50 9.85 6.92 71.24 0.49 10.34 16 17 O -0.53 -13.16 16.72 21.97 0.37 -12.80 16 18 O -0.50 -6.44 11.81 -51.36 -0.61 -7.04 16 19 C -0.14 -1.97 4.79 30.68 0.15 -1.83 16 20 C 0.05 0.93 6.62 72.01 0.48 1.40 16 21 O -0.39 -8.39 10.76 -148.98 -1.60 -9.99 16 22 C 0.05 1.15 6.55 72.01 0.47 1.62 16 23 C -0.12 -2.51 3.88 30.68 0.12 -2.39 16 24 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.42 8.28 6.55 -92.71 -0.61 7.68 16 32 H 0.44 2.04 9.10 -74.06 -0.67 1.37 16 33 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.11 1.22 7.52 -2.38 -0.02 1.20 16 35 H 0.04 0.82 7.38 -2.38 -0.02 0.81 16 36 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 1.54 5.80 -2.39 -0.01 1.53 16 38 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.08 1.84 8.03 -2.39 -0.02 1.82 16 40 H 0.10 1.87 8.02 -2.39 -0.02 1.85 16 Total: -1.00 -72.73 329.18 1.42 -71.31 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -0.22 Total: 13.15 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 3.62 Total: -4.14 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -2.12 Total: -76.12 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -1.88 Total: -49.04 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -72.73 1.42 -71.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609186.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.686 kcal (2) G-P(sol) polarization free energy of solvation -72.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds