Wall clock time and date at job start Tue Mar 31 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47063 * 2 1 4 4 C 1.52990 * 113.00024 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47411 * 179.97438 * 4 3 2 6 6 O 1.21293 * 120.00009 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00644 * 179.72086 * 5 4 3 8 8 C 1.37101 * 119.99672 * 0.27939 * 7 5 4 9 9 H 1.07999 * 119.99632 * 322.25062 * 8 7 5 10 10 C 1.38948 * 120.00129 * 142.24790 * 8 7 5 11 11 N 1.31411 * 120.00139 * 157.64109 * 10 8 7 12 12 Si 1.86804 * 119.99704 * 337.64027 * 10 8 7 13 13 H 1.48492 * 109.46987 * 95.70823 * 12 10 8 14 14 H 1.48510 * 109.46821 * 215.70664 * 12 10 8 15 15 H 1.48501 * 109.47340 * 335.70034 * 12 10 8 16 16 C 1.46496 * 120.00398 * 180.27408 * 7 5 4 17 17 C 1.53001 * 109.47021 * 83.62465 * 16 7 5 18 18 C 1.50699 * 109.47339 * 180.02562 * 17 16 7 19 19 O 1.20829 * 120.00002 * 359.97438 * 18 17 16 20 20 O 1.34229 * 120.00139 * 180.02562 * 18 17 16 21 21 C 1.54043 * 113.81522 * 311.82603 * 3 2 1 22 22 O 1.44450 * 85.42419 * 91.80706 * 21 3 2 23 23 C 1.44180 * 93.37943 * 24.08829 * 22 21 3 24 24 H 1.08998 * 109.47222 * 60.00314 * 1 2 3 25 25 H 1.09000 * 109.46853 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47409 * 299.99970 * 1 2 3 27 27 H 1.09003 * 109.46966 * 239.99823 * 2 1 3 28 28 H 1.08998 * 109.47222 * 119.99686 * 2 1 3 29 29 H 1.09004 * 109.47125 * 59.99903 * 4 3 2 30 30 H 1.09006 * 109.47155 * 300.00142 * 4 3 2 31 31 H 0.96993 * 119.99778 * 179.97438 * 11 10 8 32 32 H 1.09001 * 109.47177 * 203.62199 * 16 7 5 33 33 H 1.09001 * 109.47264 * 323.62393 * 16 7 5 34 34 H 1.09001 * 109.46928 * 299.99887 * 17 16 7 35 35 H 1.09001 * 109.47161 * 59.99865 * 17 16 7 36 36 H 0.96701 * 116.99976 * 180.02562 * 20 18 17 37 37 H 1.08990 * 113.86466 * 205.91505 * 21 3 2 38 38 H 1.09003 * 113.86344 * 337.62363 * 21 3 2 39 39 H 1.09001 * 113.86453 * 221.76594 * 23 22 21 40 40 H 1.08992 * 113.86207 * 90.06032 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5670 1.5367 -0.0006 5 6 3.9810 2.9857 -0.0012 6 8 3.1376 3.8574 -0.0007 7 7 5.2883 3.3132 0.0038 8 6 6.2418 2.3279 0.0038 9 1 6.0840 1.4239 0.5731 10 6 7.4109 2.4926 -0.7288 11 7 8.4870 1.8083 -0.4115 12 14 7.4529 3.6866 -2.1648 13 1 7.9931 4.9919 -1.7075 14 1 8.3218 3.1398 -3.2379 15 1 6.0773 3.8768 -2.6909 16 6 5.6907 4.7218 0.0093 17 6 5.6723 5.2518 1.4445 18 6 6.0855 6.7010 1.4501 19 8 6.3665 7.2532 0.4128 20 8 6.1425 7.3782 2.6077 21 6 1.3613 2.3422 -1.0502 22 8 0.4263 2.6675 0.0018 23 6 1.3613 2.3422 1.0501 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9609 1.0463 -0.8909 30 1 3.9617 1.0461 0.8891 31 1 9.3030 1.9230 -0.9232 32 1 6.6971 4.8138 -0.3990 33 1 4.9968 5.3003 -0.6006 34 1 4.6658 5.1598 1.8529 35 1 6.3662 4.6734 2.0544 36 1 6.4125 8.3056 2.5610 37 1 1.9740 3.1844 -1.3715 38 1 0.9185 1.7932 -1.8812 39 1 0.9185 1.7932 1.8812 40 1 1.9740 3.1844 1.3714 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595372348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:17 Heat of formation + Delta-G solvation = -129.353797 kcal Electronic energy + Delta-G solvation = -23975.874890 eV Core-core repulsion = 20371.735244 eV Total energy + Delta-G solvation = -3604.139646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.82312 -40.00805 -38.48761 -35.99734 -35.19247 -33.46081 -32.40650 -31.23961 -29.98324 -26.09248 -26.06322 -25.14503 -23.96229 -23.15742 -20.88554 -19.21325 -18.35875 -17.92964 -16.89356 -16.51683 -16.36402 -15.87111 -15.66727 -15.40064 -15.18145 -14.54958 -14.32045 -13.92934 -13.71671 -13.19485 -13.01341 -12.71866 -12.64450 -12.36495 -12.20801 -11.99343 -11.69783 -11.40997 -11.32536 -11.16467 -10.96811 -10.89001 -10.69087 -10.34470 -10.30927 -10.00999 -9.84643 -9.80742 -9.41538 -9.11686 -8.31286 -7.98171 -6.63366 -4.25102 2.47144 3.02582 3.16558 3.20865 3.25581 3.57220 4.02879 4.19767 4.38635 4.62252 4.78312 5.10852 5.27093 5.31623 5.46152 5.49947 5.54112 5.71725 5.86567 5.89497 5.93521 5.97895 6.02538 6.07746 6.17890 6.25068 6.26632 6.36985 6.41498 6.46378 6.51834 6.69030 6.70968 6.74676 6.76366 7.18311 7.91678 8.07294 8.12107 8.79096 9.16759 9.49735 10.46274 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.006291 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.848191 B = 4449.468477 C = 5636.024255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.120 4.120 4 C -0.111 4.111 5 C 0.477 3.523 6 O -0.587 6.587 7 N -0.459 5.459 8 C -0.355 4.355 9 H 0.108 0.892 10 C 0.073 3.927 11 N -0.852 5.852 12 Si 0.867 3.133 13 H -0.269 1.269 14 H -0.285 1.285 15 H -0.260 1.260 16 C 0.114 3.886 17 C -0.123 4.123 18 C 0.484 3.516 19 O -0.520 6.520 20 O -0.520 6.520 21 C 0.045 3.955 22 O -0.383 6.383 23 C 0.046 3.954 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.277 0.723 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.404 0.596 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.944 0.403 3.179 7.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.135 4.135 3 C -0.121 4.121 4 C -0.151 4.151 5 C 0.268 3.732 6 O -0.474 6.474 7 N -0.179 5.179 8 C -0.481 4.481 9 H 0.125 0.875 10 C -0.136 4.136 11 N -0.486 5.486 12 Si 0.693 3.307 13 H -0.195 1.195 14 H -0.212 1.212 15 H -0.184 1.184 16 C -0.009 4.009 17 C -0.161 4.161 18 C 0.327 3.673 19 O -0.408 6.408 20 O -0.332 6.332 21 C -0.031 4.031 22 O -0.302 6.302 23 C -0.030 4.030 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.262 0.738 37 H 0.123 0.877 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.429 0.582 2.872 7.986 hybrid contribution 0.886 0.996 -0.764 1.537 sum -6.543 1.579 2.108 7.053 Atomic orbital electron populations 1.21773 0.95405 1.00267 1.02841 1.21240 0.96067 0.94018 1.02204 1.23508 0.94952 0.95951 0.97664 1.21277 0.93890 0.95235 1.04678 1.20495 0.82240 0.90941 0.79491 1.90514 1.50206 1.51439 1.55217 1.43772 1.05139 1.04273 1.64692 1.19077 0.97474 1.00360 1.31210 0.87453 1.25331 0.94847 0.96612 0.96842 1.69760 1.00548 1.40741 1.37519 0.87078 0.79579 0.80950 0.83086 1.19501 1.21187 1.18356 1.21414 1.01489 0.84388 0.93645 1.21755 1.04859 0.87321 1.02205 1.23715 0.72886 0.90210 0.80507 1.90704 1.45846 1.70523 1.33741 1.84578 1.81644 1.29948 1.36981 1.24332 0.89927 0.97787 0.91058 1.89549 1.32759 1.90778 1.17141 1.24263 0.89986 0.97693 0.91102 0.92405 0.93628 0.92398 0.91550 0.91584 0.88790 0.89324 0.91253 0.90318 0.90534 0.87365 0.86884 0.73841 0.87715 0.91435 0.91506 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.63 37.16 0.32 -1.47 16 2 C -0.10 -1.26 5.65 -26.73 -0.15 -1.42 16 3 C -0.12 -1.88 1.38 -153.43 -0.21 -2.09 16 4 C -0.11 -1.92 4.17 -27.89 -0.12 -2.04 16 5 C 0.48 9.73 6.85 -10.99 -0.08 9.66 16 6 O -0.59 -12.58 10.61 5.55 0.06 -12.52 16 7 N -0.46 -10.02 2.18 -114.81 -0.25 -10.27 16 8 C -0.35 -8.41 9.06 -14.93 -0.14 -8.55 16 9 H 0.11 2.62 7.23 -52.49 -0.38 2.24 16 10 C 0.07 1.81 5.26 -17.47 -0.09 1.71 16 11 N -0.85 -22.22 13.96 55.50 0.77 -21.45 16 12 Si 0.87 19.97 25.05 -169.99 -4.26 15.72 16 13 H -0.27 -6.25 6.69 56.52 0.38 -5.88 16 14 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 16 C 0.11 2.42 3.22 -4.04 -0.01 2.41 16 17 C -0.12 -2.19 6.08 -27.88 -0.17 -2.36 16 18 C 0.48 8.23 8.33 36.00 0.30 8.53 16 19 O -0.52 -10.37 16.74 -18.75 -0.31 -10.69 16 20 O -0.52 -6.86 13.42 -39.25 -0.53 -7.39 16 21 C 0.05 0.77 7.23 37.65 0.27 1.04 16 22 O -0.38 -6.91 10.87 -35.23 -0.38 -7.29 16 23 C 0.05 0.76 7.22 37.64 0.27 1.03 16 24 H 0.06 0.75 6.53 -51.93 -0.34 0.41 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.75 6.53 -51.93 -0.34 0.41 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.64 8.10 -51.93 -0.42 1.22 16 30 H 0.09 1.47 7.66 -51.93 -0.40 1.08 16 31 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.08 1.79 3.61 -51.93 -0.19 1.60 16 33 H 0.08 1.68 7.58 -51.93 -0.39 1.28 16 34 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 35 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 36 H 0.40 3.40 9.10 45.56 0.41 3.82 16 37 H 0.11 2.03 5.54 -51.93 -0.29 1.75 16 38 H 0.07 1.01 7.33 -51.93 -0.38 0.63 16 39 H 0.07 0.96 7.33 -51.93 -0.38 0.58 16 40 H 0.10 1.91 5.54 -51.93 -0.29 1.62 16 LS Contribution 317.92 15.07 4.79 4.79 Total: -1.00 -28.84 317.92 -4.56 -33.40 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -4.65 Total: 9.23 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 0.20 Total: 6.47 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.52 Total: -31.72 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -1.16 Total: -37.88 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.26 Total: 15.72 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.84 -4.56 -33.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595372348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.951 kcal (2) G-P(sol) polarization free energy of solvation -28.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds