Wall clock time and date at job start Tue Mar 31 2020 05:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47063 * 2 1 4 4 C 1.52990 * 113.00024 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47411 * 179.97438 * 4 3 2 6 6 O 1.21293 * 120.00009 * 0.02562 * 5 4 3 7 7 N 1.34778 * 120.00644 * 179.72086 * 5 4 3 8 8 C 1.37101 * 119.99672 * 0.27939 * 7 5 4 9 9 H 1.07999 * 119.99632 * 322.25062 * 8 7 5 10 10 C 1.38948 * 120.00129 * 142.24790 * 8 7 5 11 11 N 1.31411 * 120.00139 * 157.64109 * 10 8 7 12 12 Si 1.86804 * 119.99704 * 337.64027 * 10 8 7 13 13 H 1.48492 * 109.46987 * 95.70823 * 12 10 8 14 14 H 1.48510 * 109.46821 * 215.70664 * 12 10 8 15 15 H 1.48501 * 109.47340 * 335.70034 * 12 10 8 16 16 C 1.46496 * 120.00398 * 180.27408 * 7 5 4 17 17 C 1.53001 * 109.47021 * 83.62465 * 16 7 5 18 18 C 1.50699 * 109.47339 * 180.02562 * 17 16 7 19 19 O 1.20829 * 120.00002 * 359.97438 * 18 17 16 20 20 O 1.34229 * 120.00139 * 180.02562 * 18 17 16 21 21 C 1.54043 * 113.81522 * 311.82603 * 3 2 1 22 22 O 1.44450 * 85.42419 * 91.80706 * 21 3 2 23 23 C 1.44180 * 93.37943 * 24.08829 * 22 21 3 24 24 H 1.08998 * 109.47222 * 60.00314 * 1 2 3 25 25 H 1.09000 * 109.46853 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47409 * 299.99970 * 1 2 3 27 27 H 1.09003 * 109.46966 * 239.99823 * 2 1 3 28 28 H 1.08998 * 109.47222 * 119.99686 * 2 1 3 29 29 H 1.09004 * 109.47125 * 59.99903 * 4 3 2 30 30 H 1.09006 * 109.47155 * 300.00142 * 4 3 2 31 31 H 0.96993 * 119.99778 * 179.97438 * 11 10 8 32 32 H 1.09001 * 109.47177 * 203.62199 * 16 7 5 33 33 H 1.09001 * 109.47264 * 323.62393 * 16 7 5 34 34 H 1.09001 * 109.46928 * 299.99887 * 17 16 7 35 35 H 1.09001 * 109.47161 * 59.99865 * 17 16 7 36 36 H 0.96701 * 116.99976 * 180.02562 * 20 18 17 37 37 H 1.08990 * 113.86466 * 205.91505 * 21 3 2 38 38 H 1.09003 * 113.86344 * 337.62363 * 21 3 2 39 39 H 1.09001 * 113.86453 * 221.76594 * 23 22 21 40 40 H 1.08992 * 113.86207 * 90.06032 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5670 1.5367 -0.0006 5 6 3.9810 2.9857 -0.0012 6 8 3.1376 3.8574 -0.0007 7 7 5.2883 3.3132 0.0038 8 6 6.2418 2.3279 0.0038 9 1 6.0840 1.4239 0.5731 10 6 7.4109 2.4926 -0.7288 11 7 8.4870 1.8083 -0.4115 12 14 7.4529 3.6866 -2.1648 13 1 7.9931 4.9919 -1.7075 14 1 8.3218 3.1398 -3.2379 15 1 6.0773 3.8768 -2.6909 16 6 5.6907 4.7218 0.0093 17 6 5.6723 5.2518 1.4445 18 6 6.0855 6.7010 1.4501 19 8 6.3665 7.2532 0.4128 20 8 6.1425 7.3782 2.6077 21 6 1.3613 2.3422 -1.0502 22 8 0.4263 2.6675 0.0018 23 6 1.3613 2.3422 1.0501 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9609 1.0463 -0.8909 30 1 3.9617 1.0461 0.8891 31 1 9.3030 1.9230 -0.9232 32 1 6.6971 4.8138 -0.3990 33 1 4.9968 5.3003 -0.6006 34 1 4.6658 5.1598 1.8529 35 1 6.3662 4.6734 2.0544 36 1 6.4125 8.3056 2.5610 37 1 1.9740 3.1844 -1.3715 38 1 0.9185 1.7932 -1.8812 39 1 0.9185 1.7932 1.8812 40 1 1.9740 3.1844 1.3714 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595372348.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:17 Heat of formation + Delta-G solvation = -148.805885 kcal Electronic energy + Delta-G solvation = -23976.718396 eV Core-core repulsion = 20371.735244 eV Total energy + Delta-G solvation = -3604.983152 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.22523 -41.36581 -40.07317 -37.31357 -36.86470 -34.69635 -34.21022 -32.78713 -31.28772 -27.52326 -27.39443 -26.93479 -25.45489 -24.28594 -22.26126 -20.95044 -19.69544 -19.25721 -18.48256 -18.10503 -17.90465 -17.22095 -17.05284 -16.87832 -16.71076 -15.93841 -15.81900 -15.41310 -15.22816 -14.75188 -14.50294 -14.36294 -13.93659 -13.74766 -13.57920 -13.56714 -13.06883 -12.79929 -12.69863 -12.62189 -12.48584 -12.13778 -12.03574 -11.96593 -11.81519 -11.72568 -11.28641 -11.07788 -11.05799 -10.68783 -9.88081 -9.73302 -8.55515 -6.15006 1.11330 1.17939 1.30902 1.38448 1.79535 1.98206 2.15159 2.70493 2.92023 3.03555 3.35654 3.80535 3.83131 3.91557 4.07119 4.29572 4.32022 4.44075 4.48702 4.56657 4.65590 4.66744 4.77297 4.83441 4.86195 4.88751 4.90384 4.98166 5.14899 5.30568 5.33058 5.43073 5.44442 5.46705 5.52238 5.55632 6.08355 6.23287 6.92981 6.94194 7.39475 7.76025 8.57772 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.006291 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.848191 B = 4449.468477 C = 5636.024255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.108 4.108 4 C -0.107 4.107 5 C 0.478 3.522 6 O -0.595 6.595 7 N -0.472 5.472 8 C -0.338 4.338 9 H 0.101 0.899 10 C 0.044 3.956 11 N -0.885 5.885 12 Si 0.904 3.096 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.269 1.269 16 C 0.113 3.887 17 C -0.116 4.116 18 C 0.495 3.505 19 O -0.554 6.554 20 O -0.505 6.505 21 C 0.040 3.960 22 O -0.397 6.397 23 C 0.044 3.956 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.279 0.721 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.428 0.572 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.973 -0.324 3.971 8.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.108 4.108 4 C -0.147 4.147 5 C 0.270 3.730 6 O -0.482 6.482 7 N -0.193 5.193 8 C -0.465 4.465 9 H 0.119 0.881 10 C -0.162 4.162 11 N -0.521 5.521 12 Si 0.732 3.268 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.194 1.194 16 C -0.011 4.011 17 C -0.155 4.155 18 C 0.338 3.662 19 O -0.445 6.445 20 O -0.318 6.318 21 C -0.036 4.036 22 O -0.316 6.316 23 C -0.033 4.033 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.290 0.710 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.472 -0.119 3.685 9.239 hybrid contribution 1.092 1.309 -0.942 1.948 sum -7.379 1.190 2.743 7.962 Atomic orbital electron populations 1.21733 0.94790 1.01403 1.01983 1.21270 0.96482 0.91853 1.03521 1.23485 0.93415 0.97542 0.96383 1.21307 0.95295 0.92853 1.05206 1.21065 0.81536 0.92303 0.78133 1.90532 1.50293 1.52323 1.55002 1.43867 1.05410 1.04151 1.65873 1.19022 0.97279 1.00307 1.29890 0.88103 1.25649 0.95036 0.97495 0.98012 1.69792 1.01101 1.42514 1.38729 0.86496 0.78785 0.79699 0.81866 1.20255 1.20848 1.19360 1.21309 0.99974 0.84200 0.95587 1.21579 1.05627 0.88303 0.99983 1.23386 0.72100 0.89917 0.80758 1.90703 1.47538 1.71159 1.35128 1.84502 1.80918 1.31757 1.34653 1.24276 0.90005 0.97379 0.91952 1.89539 1.33248 1.90988 1.17805 1.24251 0.89876 0.97345 0.91799 0.93408 0.91503 0.93107 0.90464 0.90065 0.88644 0.88179 0.91053 0.92009 0.91884 0.86518 0.86226 0.71001 0.90632 0.89347 0.89047 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.63 71.98 0.62 -2.44 16 2 C -0.09 -2.12 5.65 30.60 0.17 -1.95 16 3 C -0.11 -3.14 1.38 -51.48 -0.07 -3.22 16 4 C -0.11 -3.54 4.17 29.84 0.12 -3.41 16 5 C 0.48 19.22 6.85 87.66 0.60 19.82 16 6 O -0.60 -25.43 10.61 -3.07 -0.03 -25.47 16 7 N -0.47 -20.48 2.18 -635.55 -1.39 -21.87 16 8 C -0.34 -15.89 9.06 84.04 0.76 -15.13 16 9 H 0.10 4.85 7.23 -2.91 -0.02 4.83 16 10 C 0.04 2.18 5.26 84.93 0.45 2.62 16 11 N -0.88 -46.22 13.96 21.66 0.30 -45.92 16 12 Si 0.90 41.54 25.05 68.60 1.72 43.25 16 13 H -0.28 -12.88 6.69 99.48 0.67 -12.21 16 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 15 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 16 C 0.11 4.80 3.22 86.38 0.28 5.08 16 17 C -0.12 -4.06 6.08 29.85 0.18 -3.88 16 18 C 0.49 16.26 8.33 71.24 0.59 16.85 16 19 O -0.55 -21.89 16.74 21.96 0.37 -21.52 16 20 O -0.50 -12.14 13.42 -51.41 -0.69 -12.83 16 21 C 0.04 1.32 7.23 72.30 0.52 1.84 16 22 O -0.40 -13.79 10.87 -148.98 -1.62 -15.41 16 23 C 0.04 1.37 7.22 72.30 0.52 1.89 16 24 H 0.05 1.12 6.53 -2.39 -0.02 1.11 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.16 6.53 -2.39 -0.02 1.15 16 27 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.10 3.17 8.10 -2.39 -0.02 3.15 16 30 H 0.10 3.11 7.66 -2.38 -0.02 3.10 16 31 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 32 H 0.06 2.84 3.61 -2.39 -0.01 2.83 16 33 H 0.06 2.81 7.58 -2.39 -0.02 2.79 16 34 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 35 H 0.12 4.02 8.14 -2.39 -0.02 4.01 16 36 H 0.43 6.05 9.10 -74.06 -0.67 5.37 16 37 H 0.08 2.94 5.54 -2.39 -0.01 2.92 16 38 H 0.09 2.50 7.33 -2.39 -0.02 2.48 16 39 H 0.09 2.40 7.33 -2.39 -0.02 2.38 16 40 H 0.08 2.91 5.54 -2.39 -0.01 2.90 16 Total: -1.00 -61.24 317.92 3.77 -57.47 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.36 Total: 24.20 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 4.75 Total: 18.08 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -1.09 Total: -67.78 kcal Atomic # 8 Polarization: -73.25 SS G_CDS: -1.97 Total: -75.23 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.72 Total: 43.25 kcal Total: -61.24 3.77 -57.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595372348.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.334 kcal (2) G-P(sol) polarization free energy of solvation -61.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds