Wall clock time and date at job start Tue Mar 31 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46979 * 2 1 4 4 C 1.37095 * 120.00032 * 263.55099 * 3 2 1 5 5 H 1.08001 * 120.00136 * 188.38657 * 4 3 2 6 6 C 1.38950 * 119.99784 * 8.39162 * 4 3 2 7 7 N 1.31407 * 120.00145 * 25.16844 * 6 4 3 8 8 Si 1.86798 * 119.99994 * 205.17006 * 6 4 3 9 9 H 1.48502 * 109.47398 * 84.98579 * 8 6 4 10 10 H 1.48497 * 109.47362 * 204.98951 * 8 6 4 11 11 H 1.48503 * 109.47103 * 324.98526 * 8 6 4 12 12 C 1.34775 * 120.00159 * 83.55432 * 3 2 1 13 13 O 1.21296 * 120.00168 * 180.02562 * 12 3 2 14 14 C 1.50703 * 120.00018 * 359.97438 * 12 3 2 15 15 C 1.53000 * 109.47262 * 180.02562 * 14 12 3 16 16 C 1.52998 * 109.47138 * 179.97438 * 15 14 12 17 17 H 1.09000 * 110.35748 * 307.14539 * 16 15 14 18 18 C 1.54951 * 110.31042 * 184.99926 * 16 15 14 19 19 C 1.55304 * 100.94313 * 204.64396 * 18 16 15 20 20 H 1.08996 * 110.84834 * 275.94320 * 19 18 16 21 21 C 1.50699 * 110.85025 * 152.32389 * 19 18 16 22 22 O 1.20825 * 119.99710 * 359.97438 * 21 19 18 23 23 O 1.34222 * 120.00566 * 179.97438 * 21 19 18 24 24 C 1.54380 * 102.25273 * 34.13021 * 19 18 16 25 25 O 1.43231 * 107.59153 * 338.64826 * 24 19 18 26 26 H 1.08998 * 109.47308 * 300.00215 * 1 2 3 27 27 H 1.09002 * 109.47138 * 60.00456 * 1 2 3 28 28 H 1.08998 * 109.46984 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47308 * 239.99785 * 2 1 3 30 30 H 1.09009 * 109.46736 * 119.99575 * 2 1 3 31 31 H 0.97002 * 120.00304 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47428 * 59.99991 * 14 12 3 33 33 H 1.09006 * 109.47035 * 299.99959 * 14 12 3 34 34 H 1.09006 * 109.47039 * 60.00291 * 15 14 12 35 35 H 1.09000 * 109.47214 * 300.00293 * 15 14 12 36 36 H 1.08999 * 111.12348 * 322.56141 * 18 16 15 37 37 H 1.08996 * 111.12151 * 86.72415 * 18 16 15 38 38 H 0.96699 * 117.00496 * 179.97438 * 23 21 19 39 39 H 1.09008 * 109.82607 * 98.15591 * 24 19 18 40 40 H 1.08995 * 109.83515 * 219.03258 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3725 1.9831 -1.1798 5 1 2.8579 2.9478 -1.1694 6 6 2.1069 1.3519 -2.3888 7 7 1.1284 0.4788 -2.4731 8 14 3.1407 1.7444 -3.8943 9 1 4.3649 0.9038 -3.8871 10 1 2.3542 1.4630 -5.1220 11 1 3.5250 3.1787 -3.8706 12 6 2.1194 2.0603 1.1598 13 8 2.5232 3.2040 1.1597 14 6 1.7296 1.3989 2.4566 15 6 1.9374 2.3800 3.6121 16 6 1.5410 1.7088 4.9286 17 1 0.5344 1.2970 4.8563 18 6 1.6242 2.7239 6.0963 19 6 1.8360 1.7689 7.3026 20 1 0.8826 1.3845 7.6651 21 6 2.5922 2.4603 8.4077 22 8 2.9430 3.6086 8.2730 23 8 2.8760 1.8005 9.5416 24 6 2.6835 0.6384 6.6807 25 8 2.4799 0.6744 5.2633 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.9427 0.0384 -3.3173 32 1 2.3480 0.5153 2.6141 33 1 0.6806 1.1054 2.4139 34 1 1.3186 3.2634 3.4544 35 1 2.9861 2.6740 3.6550 36 1 2.4738 3.3955 5.9731 37 1 0.6945 3.2838 6.1970 38 1 3.3632 2.2855 10.2216 39 1 3.7376 0.7992 6.9070 40 1 2.3632 -0.3250 7.0773 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596200329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:34 Heat of formation + Delta-G solvation = -169.246376 kcal Electronic energy + Delta-G solvation = -22843.630048 eV Core-core repulsion = 19237.760530 eV Total energy + Delta-G solvation = -3605.869518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.96265 -39.28925 -38.41650 -36.49911 -35.10031 -33.16139 -32.65184 -31.69863 -29.38938 -28.70578 -25.30294 -24.55340 -23.49979 -22.06015 -21.07443 -20.70596 -18.56180 -18.39022 -17.49659 -16.95402 -16.67448 -15.95001 -15.61705 -15.51418 -14.65589 -14.44760 -14.20169 -14.09212 -13.52093 -13.34659 -12.86424 -12.70270 -12.58220 -12.20177 -12.00458 -11.82560 -11.65828 -11.51312 -11.27670 -11.17670 -11.01018 -10.87254 -10.74691 -10.72436 -10.44763 -10.25213 -10.03472 -9.74159 -9.57046 -8.83185 -8.25594 -7.68418 -6.29948 -3.70573 1.79666 2.57967 3.20276 3.29737 3.34711 3.65624 3.94053 3.99147 4.18181 4.55449 4.57520 4.70781 4.96933 5.02027 5.10076 5.14420 5.37885 5.41964 5.51231 5.57671 5.76277 5.81533 5.98050 6.06134 6.11248 6.13554 6.36169 6.51178 6.64199 6.70810 6.73292 6.83199 6.95180 7.32883 7.49869 7.52760 7.79055 8.17465 8.58897 9.26328 9.53870 10.09915 10.71003 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.038316 B = 0.003149 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.585494 B = 8888.806447 C = 9245.052545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.121 3.879 3 N -0.444 5.444 4 C -0.306 4.306 5 H 0.103 0.897 6 C 0.029 3.971 7 N -0.868 5.868 8 Si 0.917 3.083 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.442 3.558 13 O -0.598 6.598 14 C -0.126 4.126 15 C -0.097 4.097 16 C 0.081 3.919 17 H 0.077 0.923 18 C -0.137 4.137 19 C -0.122 4.122 20 H 0.123 0.877 21 C 0.490 3.510 22 O -0.506 6.506 23 O -0.516 6.516 24 C 0.069 3.931 25 O -0.367 6.367 26 H 0.023 0.977 27 H 0.091 0.909 28 H 0.036 0.964 29 H 0.100 0.900 30 H 0.033 0.967 31 H 0.266 0.734 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.411 0.589 39 H 0.071 0.929 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.438 -3.582 19.177 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.003 4.003 3 N -0.163 5.163 4 C -0.434 4.434 5 H 0.121 0.879 6 C -0.173 4.173 7 N -0.508 5.508 8 Si 0.744 3.256 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.196 1.196 12 C 0.231 3.769 13 O -0.484 6.484 14 C -0.167 4.167 15 C -0.134 4.134 16 C 0.024 3.976 17 H 0.095 0.905 18 C -0.174 4.174 19 C -0.141 4.141 20 H 0.141 0.859 21 C 0.332 3.668 22 O -0.393 6.393 23 O -0.328 6.328 24 C -0.008 4.008 25 O -0.287 6.287 26 H 0.042 0.958 27 H 0.109 0.891 28 H 0.055 0.945 29 H 0.118 0.882 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.270 0.730 39 H 0.089 0.911 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.346 -3.181 18.502 18.821 hybrid contribution 0.503 0.376 -0.063 0.631 sum -0.842 -2.806 18.439 18.670 Atomic orbital electron populations 1.22116 0.96825 0.99712 1.01928 1.21427 0.94400 0.83755 1.00718 1.43837 1.55540 1.11279 1.05608 1.19726 1.35908 1.05439 0.82309 0.87929 1.25161 0.96063 0.97273 0.98836 1.70114 1.25078 1.29016 1.26552 0.86086 0.80024 0.79139 0.80347 1.20444 1.21217 1.19562 1.20016 0.84883 0.86863 0.85172 1.90494 1.52182 1.18603 1.87079 1.21514 1.02240 0.99308 0.93605 1.21425 1.03564 0.97895 0.90553 1.23200 0.92978 0.86475 0.94911 0.90501 1.23374 1.05150 0.97913 0.90990 1.22656 1.00447 0.98200 0.92841 0.85896 1.23049 0.76766 0.84897 0.82118 1.90757 1.49883 1.18568 1.80057 1.84533 1.71280 1.49276 1.27680 1.22944 0.99005 0.96774 0.82116 1.88526 1.64370 1.55492 1.20304 0.95751 0.89072 0.94461 0.88200 0.94878 0.92396 0.90134 0.90473 0.90000 0.90577 0.88390 0.88874 0.72952 0.91126 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.64 37.16 0.36 -2.73 16 2 C 0.12 2.73 5.07 -4.04 -0.02 2.71 16 3 N -0.44 -11.50 2.64 -114.81 -0.30 -11.80 16 4 C -0.31 -8.62 9.43 -14.93 -0.14 -8.76 16 5 H 0.10 3.07 7.31 -52.49 -0.38 2.69 16 6 C 0.03 0.76 4.90 -17.47 -0.09 0.68 16 7 N -0.87 -22.37 8.65 55.50 0.48 -21.89 16 8 Si 0.92 20.74 29.62 -169.99 -5.04 15.71 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 C 0.44 10.95 7.58 -10.98 -0.08 10.87 16 13 O -0.60 -16.81 15.58 5.54 0.09 -16.72 16 14 C -0.13 -2.38 4.24 -27.88 -0.12 -2.50 16 15 C -0.10 -1.59 4.23 -26.73 -0.11 -1.70 16 16 C 0.08 1.02 3.41 -25.70 -0.09 0.94 16 17 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 18 C -0.14 -1.47 5.70 -24.48 -0.14 -1.61 16 19 C -0.12 -1.08 3.50 -89.83 -0.31 -1.39 16 20 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 21 C 0.49 4.68 7.50 36.00 0.27 4.95 16 22 O -0.51 -6.55 16.45 -18.75 -0.31 -6.86 16 23 O -0.52 -3.46 13.42 -39.24 -0.53 -3.99 16 24 C 0.07 0.68 7.39 37.88 0.28 0.96 16 25 O -0.37 -4.94 10.81 -35.23 -0.38 -5.32 16 26 H 0.02 0.46 6.45 -51.93 -0.33 0.13 16 27 H 0.09 2.19 6.38 -51.93 -0.33 1.86 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.10 2.44 5.83 -51.93 -0.30 2.13 16 30 H 0.03 0.66 6.71 -51.92 -0.35 0.31 16 31 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 32 H 0.08 1.47 7.27 -51.93 -0.38 1.09 16 33 H 0.08 1.34 6.41 -51.93 -0.33 1.01 16 34 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 35 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 36 H 0.10 1.24 7.29 -51.93 -0.38 0.86 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.41 1.10 9.10 45.56 0.41 1.51 16 39 H 0.07 0.69 7.81 -51.92 -0.41 0.28 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 326.84 15.07 4.93 4.93 Total: -1.00 -33.37 326.84 -6.13 -39.50 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.87 Total: 4.04 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -0.19 Total: 2.41 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.18 Total: -33.69 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -1.13 Total: -32.89 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.04 Total: 15.71 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.37 -6.13 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.749 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds