Wall clock time and date at job start Tue Mar 31 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46979 * 2 1 4 4 C 1.37095 * 120.00032 * 263.55099 * 3 2 1 5 5 H 1.08001 * 120.00136 * 188.38657 * 4 3 2 6 6 C 1.38950 * 119.99784 * 8.39162 * 4 3 2 7 7 N 1.31407 * 120.00145 * 25.16844 * 6 4 3 8 8 Si 1.86798 * 119.99994 * 205.17006 * 6 4 3 9 9 H 1.48502 * 109.47398 * 84.98579 * 8 6 4 10 10 H 1.48497 * 109.47362 * 204.98951 * 8 6 4 11 11 H 1.48503 * 109.47103 * 324.98526 * 8 6 4 12 12 C 1.34775 * 120.00159 * 83.55432 * 3 2 1 13 13 O 1.21296 * 120.00168 * 180.02562 * 12 3 2 14 14 C 1.50703 * 120.00018 * 359.97438 * 12 3 2 15 15 C 1.53000 * 109.47262 * 180.02562 * 14 12 3 16 16 C 1.52998 * 109.47138 * 179.97438 * 15 14 12 17 17 H 1.09000 * 110.35748 * 307.14539 * 16 15 14 18 18 C 1.54951 * 110.31042 * 184.99926 * 16 15 14 19 19 C 1.55304 * 100.94313 * 204.64396 * 18 16 15 20 20 H 1.08996 * 110.84834 * 275.94320 * 19 18 16 21 21 C 1.50699 * 110.85025 * 152.32389 * 19 18 16 22 22 O 1.20825 * 119.99710 * 359.97438 * 21 19 18 23 23 O 1.34222 * 120.00566 * 179.97438 * 21 19 18 24 24 C 1.54380 * 102.25273 * 34.13021 * 19 18 16 25 25 O 1.43231 * 107.59153 * 338.64826 * 24 19 18 26 26 H 1.08998 * 109.47308 * 300.00215 * 1 2 3 27 27 H 1.09002 * 109.47138 * 60.00456 * 1 2 3 28 28 H 1.08998 * 109.46984 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47308 * 239.99785 * 2 1 3 30 30 H 1.09009 * 109.46736 * 119.99575 * 2 1 3 31 31 H 0.97002 * 120.00304 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47428 * 59.99991 * 14 12 3 33 33 H 1.09006 * 109.47035 * 299.99959 * 14 12 3 34 34 H 1.09006 * 109.47039 * 60.00291 * 15 14 12 35 35 H 1.09000 * 109.47214 * 300.00293 * 15 14 12 36 36 H 1.08999 * 111.12348 * 322.56141 * 18 16 15 37 37 H 1.08996 * 111.12151 * 86.72415 * 18 16 15 38 38 H 0.96699 * 117.00496 * 179.97438 * 23 21 19 39 39 H 1.09008 * 109.82607 * 98.15591 * 24 19 18 40 40 H 1.08995 * 109.83515 * 219.03258 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3725 1.9831 -1.1798 5 1 2.8579 2.9478 -1.1694 6 6 2.1069 1.3519 -2.3888 7 7 1.1284 0.4788 -2.4731 8 14 3.1407 1.7444 -3.8943 9 1 4.3649 0.9038 -3.8871 10 1 2.3542 1.4630 -5.1220 11 1 3.5250 3.1787 -3.8706 12 6 2.1194 2.0603 1.1598 13 8 2.5232 3.2040 1.1597 14 6 1.7296 1.3989 2.4566 15 6 1.9374 2.3800 3.6121 16 6 1.5410 1.7088 4.9286 17 1 0.5344 1.2970 4.8563 18 6 1.6242 2.7239 6.0963 19 6 1.8360 1.7689 7.3026 20 1 0.8826 1.3845 7.6651 21 6 2.5922 2.4603 8.4077 22 8 2.9430 3.6086 8.2730 23 8 2.8760 1.8005 9.5416 24 6 2.6835 0.6384 6.6807 25 8 2.4799 0.6744 5.2633 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.9427 0.0384 -3.3173 32 1 2.3480 0.5153 2.6141 33 1 0.6806 1.1054 2.4139 34 1 1.3186 3.2634 3.4544 35 1 2.9861 2.6740 3.6550 36 1 2.4738 3.3955 5.9731 37 1 0.6945 3.2838 6.1970 38 1 3.3632 2.2855 10.2216 39 1 3.7376 0.7992 6.9070 40 1 2.3632 -0.3250 7.0773 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596200329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:33 Heat of formation + Delta-G solvation = -192.692524 kcal Electronic energy + Delta-G solvation = -22844.646749 eV Core-core repulsion = 19237.760530 eV Total energy + Delta-G solvation = -3606.886220 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.73070 -40.55668 -39.90540 -37.18141 -37.04620 -34.57619 -33.65697 -33.46928 -31.18511 -29.92472 -27.06353 -25.30497 -24.95982 -23.80010 -22.08909 -21.54965 -20.34242 -19.09674 -18.76056 -18.31012 -18.00323 -17.46323 -16.63033 -16.41492 -16.27729 -16.03166 -15.85021 -15.31503 -14.56236 -14.52825 -14.39491 -14.25891 -14.02830 -13.63845 -13.17755 -13.08061 -12.91397 -12.74298 -12.68657 -12.60283 -12.46492 -12.18736 -12.12920 -12.02694 -11.86825 -11.80754 -11.64804 -11.49578 -10.79753 -10.47695 -10.24541 -9.67579 -8.31723 -5.80923 1.08201 1.36982 1.42969 1.53172 1.96388 2.07851 2.30321 2.80538 3.06606 3.11024 3.21551 3.74370 3.88475 3.97741 4.00873 4.13965 4.33396 4.36520 4.43570 4.47075 4.63281 4.72430 4.79324 4.81649 4.85860 4.93372 4.96889 5.05699 5.19271 5.21919 5.36618 5.46032 5.53231 5.54805 5.95167 6.03509 6.12421 6.58105 6.92089 7.23197 7.56757 8.13355 8.66622 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.038316 B = 0.003149 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.585494 B = 8888.806447 C = 9245.052545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.120 3.880 3 N -0.456 5.456 4 C -0.354 4.354 5 H 0.068 0.932 6 C 0.006 3.994 7 N -0.867 5.867 8 Si 0.978 3.022 9 H -0.271 1.271 10 H -0.271 1.271 11 H -0.281 1.281 12 C 0.425 3.575 13 O -0.645 6.645 14 C -0.110 4.110 15 C -0.093 4.093 16 C 0.090 3.910 17 H 0.104 0.896 18 C -0.137 4.137 19 C -0.113 4.113 20 H 0.159 0.841 21 C 0.497 3.503 22 O -0.548 6.548 23 O -0.505 6.505 24 C 0.065 3.935 25 O -0.392 6.392 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.273 0.727 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.430 0.570 39 H 0.064 0.936 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.636 -5.734 20.484 21.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.002 4.002 3 N -0.174 5.174 4 C -0.481 4.481 5 H 0.086 0.914 6 C -0.197 4.197 7 N -0.505 5.505 8 Si 0.802 3.198 9 H -0.196 1.196 10 H -0.196 1.196 11 H -0.207 1.207 12 C 0.215 3.785 13 O -0.534 6.534 14 C -0.150 4.150 15 C -0.131 4.131 16 C 0.033 3.967 17 H 0.122 0.878 18 C -0.175 4.175 19 C -0.132 4.132 20 H 0.176 0.824 21 C 0.340 3.660 22 O -0.438 6.438 23 O -0.319 6.319 24 C -0.012 4.012 25 O -0.313 6.313 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.130 0.870 38 H 0.292 0.708 39 H 0.082 0.918 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.560 -5.392 19.835 20.714 hybrid contribution 0.896 1.011 -0.465 1.429 sum -1.664 -4.381 19.370 19.929 Atomic orbital electron populations 1.21959 0.95351 1.01279 1.00934 1.21518 0.95566 0.82040 1.01122 1.44101 1.55473 1.12469 1.05351 1.19557 1.38662 1.05563 0.84366 0.91423 1.25804 0.96365 0.96926 1.00623 1.70184 1.24444 1.28335 1.27516 0.85201 0.78788 0.78323 0.77488 1.19602 1.19583 1.20655 1.21110 0.83934 0.86638 0.86798 1.90451 1.54096 1.20880 1.87992 1.21450 1.03400 0.99424 0.90747 1.21355 1.01783 0.97661 0.92302 1.23095 0.93773 0.86803 0.93041 0.87797 1.23301 1.05011 0.97691 0.91498 1.22662 1.01767 0.96948 0.91837 0.82384 1.23153 0.75928 0.84221 0.82701 1.90757 1.51659 1.20471 1.80951 1.84488 1.71087 1.48990 1.27342 1.23128 0.99093 0.98468 0.80507 1.88484 1.64784 1.55410 1.22584 0.94290 0.92460 0.91499 0.90249 0.91890 0.91656 0.89114 0.88220 0.90817 0.93415 0.91136 0.87021 0.70821 0.91778 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.48 9.64 71.98 0.69 -4.79 16 2 C 0.12 5.32 5.07 86.38 0.44 5.76 16 3 N -0.46 -24.08 2.64 -635.52 -1.68 -25.75 16 4 C -0.35 -20.65 9.43 84.04 0.79 -19.85 16 5 H 0.07 4.32 7.31 -2.91 -0.02 4.30 16 6 C 0.01 0.31 4.90 84.93 0.42 0.73 16 7 N -0.87 -44.31 8.65 21.66 0.19 -44.12 16 8 Si 0.98 42.79 29.62 68.60 2.03 44.83 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 C 0.42 21.61 7.58 87.66 0.66 22.28 16 13 O -0.64 -38.21 15.58 -3.08 -0.05 -38.26 16 14 C -0.11 -4.07 4.24 29.85 0.13 -3.94 16 15 C -0.09 -3.07 4.23 30.59 0.13 -2.94 16 16 C 0.09 2.09 3.41 31.26 0.11 2.20 16 17 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 18 C -0.14 -2.77 5.70 32.05 0.18 -2.59 16 19 C -0.11 -1.68 3.50 -10.28 -0.04 -1.72 16 20 H 0.16 1.28 8.14 -2.39 -0.02 1.26 16 21 C 0.50 8.55 7.50 71.24 0.53 9.09 16 22 O -0.55 -13.95 16.45 21.97 0.36 -13.59 16 23 O -0.51 -5.43 13.42 -51.34 -0.69 -6.12 16 24 C 0.06 1.10 7.39 72.45 0.54 1.64 16 25 O -0.39 -9.76 10.81 -148.98 -1.61 -11.37 16 26 H 0.04 1.41 6.45 -2.39 -0.02 1.40 16 27 H 0.06 2.70 6.38 -2.39 -0.02 2.68 16 28 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.08 3.83 5.83 -2.39 -0.01 3.81 16 30 H 0.06 2.38 6.71 -2.38 -0.02 2.36 16 31 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 32 H 0.09 3.17 7.27 -2.39 -0.02 3.15 16 33 H 0.10 3.22 6.41 -2.38 -0.02 3.20 16 34 H 0.07 2.51 8.10 -2.38 -0.02 2.49 16 35 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 36 H 0.07 1.83 7.29 -2.39 -0.02 1.81 16 37 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.43 1.28 9.10 -74.06 -0.67 0.60 16 39 H 0.06 1.16 7.81 -2.38 -0.02 1.14 16 40 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -75.86 326.84 3.53 -72.33 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.39 Total: 16.21 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 4.58 Total: 5.85 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -1.49 Total: -69.87 kcal Atomic # 8 Polarization: -67.35 SS G_CDS: -1.99 Total: -69.34 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.83 kcal Total: -75.86 3.53 -72.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.365 kcal (2) G-P(sol) polarization free energy of solvation -75.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds