Wall clock time and date at job start Tue Mar 31 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46493 * 109.47435 * 2 1 4 4 C 1.46501 * 120.00089 * 94.73692 * 3 2 1 5 5 C 1.50700 * 109.46871 * 275.66813 * 4 3 2 6 6 H 1.07998 * 120.00120 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99845 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99901 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99973 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47070 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47378 * 299.99959 * 9 7 5 12 12 H 1.48495 * 109.47137 * 60.00338 * 9 7 5 13 13 C 1.34776 * 120.00220 * 274.73979 * 3 2 1 14 14 O 1.21288 * 119.99757 * 4.60697 * 13 3 2 15 15 C 1.50697 * 120.00302 * 184.61332 * 13 3 2 16 16 H 1.09003 * 110.27462 * 308.25124 * 15 13 3 17 17 C 1.54940 * 110.31347 * 70.34734 * 15 13 3 18 18 C 1.55302 * 100.94438 * 155.35973 * 17 15 13 19 19 H 1.09003 * 110.84641 * 84.06150 * 18 17 15 20 20 C 1.52996 * 110.84816 * 207.67312 * 18 17 15 21 21 C 1.54380 * 102.25504 * 325.86727 * 18 17 15 22 22 H 1.09001 * 109.82973 * 261.84647 * 21 18 17 23 23 C 1.50697 * 109.82921 * 140.95859 * 21 18 17 24 24 O 1.20831 * 120.00024 * 244.99931 * 23 21 18 25 25 O 1.34228 * 120.00121 * 65.00515 * 23 21 18 26 26 O 1.43240 * 107.58417 * 21.35393 * 21 18 17 27 27 H 1.08999 * 109.46698 * 63.43707 * 1 2 3 28 28 H 1.09000 * 109.47365 * 183.43789 * 1 2 3 29 29 H 1.08998 * 109.46861 * 303.43780 * 1 2 3 30 30 H 1.09008 * 109.46767 * 239.99559 * 2 1 3 31 31 H 1.08997 * 109.46843 * 120.00550 * 2 1 3 32 32 H 1.09004 * 109.47062 * 155.67304 * 4 3 2 33 33 H 1.09000 * 109.46955 * 35.66589 * 4 3 2 34 34 H 0.96998 * 120.00023 * 359.97438 * 8 7 5 35 35 H 1.09004 * 111.12569 * 273.28172 * 17 15 13 36 36 H 1.09002 * 111.12628 * 37.39650 * 17 15 13 37 37 H 1.09001 * 109.47084 * 60.00348 * 20 18 17 38 38 H 1.09005 * 109.47039 * 179.97438 * 20 18 17 39 39 H 1.09005 * 109.47734 * 300.00261 * 20 18 17 40 40 H 0.96698 * 116.99870 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3614 2.0368 1.2644 5 6 1.1155 2.6149 1.8846 6 1 0.1635 2.5052 1.3865 7 6 1.1910 3.2838 3.0879 8 7 2.3504 3.4177 3.6941 9 14 -0.3532 4.0009 3.8563 10 1 -0.0055 4.6654 5.1380 11 1 -0.9511 4.9956 2.9298 12 1 -1.3304 2.9124 4.1117 13 6 2.1522 2.0486 -1.1632 14 8 1.7900 1.5366 -2.2013 15 6 2.7518 3.4311 -1.1740 16 1 2.2442 4.0687 -0.4501 17 6 4.2676 3.3625 -0.8604 18 6 4.7678 4.6686 -1.5355 19 1 4.6386 5.5228 -0.8709 20 6 6.2282 4.5317 -1.9708 21 6 3.8370 4.7807 -2.7620 22 1 4.3423 4.3924 -3.6463 23 6 3.4543 6.2214 -2.9832 24 8 2.3029 6.5665 -2.8594 25 8 4.3923 7.1213 -3.3177 26 8 2.6665 4.0013 -2.4896 27 1 -0.3633 0.4596 -0.9192 28 1 -0.3634 -1.0258 0.0616 29 1 -0.3633 0.5663 0.8576 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.0782 2.8363 1.0764 33 1 2.8009 1.3072 1.9445 34 1 3.1523 3.0457 3.2949 35 1 4.4477 3.3819 0.2145 36 1 4.7238 2.4840 -1.3168 37 1 6.3197 3.7114 -2.6828 38 1 6.5555 5.4589 -2.4413 39 1 6.8497 4.3270 -1.0990 40 1 4.0987 8.0332 -3.4495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596299715.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:24 Heat of formation + Delta-G solvation = -177.196653 kcal Electronic energy + Delta-G solvation = -23988.794649 eV Core-core repulsion = 20382.580381 eV Total energy + Delta-G solvation = -3606.214268 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.87123 -39.61444 -38.18460 -36.10610 -35.42211 -33.66805 -32.98552 -31.42516 -29.49393 -27.31961 -26.74257 -24.72570 -22.97661 -22.43478 -21.48990 -20.81961 -18.61175 -18.35166 -17.33007 -17.25643 -16.62887 -15.99080 -15.60456 -15.26895 -14.86237 -14.57087 -13.87252 -13.72686 -13.61040 -13.25168 -13.14011 -12.80363 -12.71965 -12.47315 -12.14035 -11.86537 -11.71483 -11.61576 -11.59198 -11.32701 -11.23093 -10.95329 -10.86757 -10.72671 -10.54882 -10.26740 -10.13627 -9.74109 -9.26688 -8.95522 -8.54404 -7.77167 -6.55601 -4.31673 2.15256 2.65734 3.14603 3.36363 3.38666 3.52013 3.56294 4.05415 4.26831 4.40641 4.66118 4.77056 4.99401 5.14767 5.15380 5.19858 5.28456 5.37209 5.55609 5.63717 5.72815 5.84170 5.84762 5.87470 5.96808 6.00810 6.15579 6.18877 6.41261 6.45904 6.54214 6.65319 6.83233 6.89195 7.35523 7.79530 7.86855 8.04539 8.35111 8.62006 8.83394 9.38396 10.80125 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.006017 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.660611 B = 4652.487512 C = 5459.511248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.126 3.874 3 N -0.588 5.588 4 C 0.219 3.781 5 C -0.617 4.617 6 H 0.059 0.941 7 C 0.025 3.975 8 N -0.905 5.905 9 Si 1.066 2.934 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.521 3.479 14 O -0.551 6.551 15 C 0.064 3.936 16 H 0.112 0.888 17 C -0.139 4.139 18 C -0.110 4.110 19 H 0.094 0.906 20 C -0.140 4.140 21 C 0.095 3.905 22 H 0.121 0.879 23 C 0.463 3.537 24 O -0.493 6.493 25 O -0.516 6.516 26 O -0.323 6.323 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.026 0.974 34 H 0.267 0.733 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.300 2.038 -8.753 12.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.003 3.997 3 N -0.320 5.320 4 C 0.099 3.901 5 C -0.655 4.655 6 H 0.077 0.923 7 C -0.180 4.180 8 N -0.540 5.540 9 Si 0.893 3.107 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.307 3.693 14 O -0.429 6.429 15 C 0.004 3.996 16 H 0.129 0.871 17 C -0.177 4.177 18 C -0.129 4.129 19 H 0.113 0.887 20 C -0.197 4.197 21 C 0.035 3.965 22 H 0.138 0.862 23 C 0.303 3.697 24 O -0.378 6.378 25 O -0.329 6.329 26 O -0.241 6.241 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 7.172 2.259 -8.008 10.985 hybrid contribution 0.278 -0.083 -1.127 1.163 sum 7.450 2.176 -9.134 11.986 Atomic orbital electron populations 1.22146 0.96235 1.01011 1.03123 1.21197 0.94775 0.82482 1.01268 1.47960 1.63415 1.13436 1.07214 1.19724 0.97217 0.92890 0.80293 1.22367 0.94745 1.39600 1.08826 0.92258 1.25796 1.03060 0.94915 0.94221 1.70859 0.99109 1.43359 1.40672 0.83568 0.74140 0.76579 0.76401 1.20612 1.21202 1.21241 1.19982 0.79164 0.86417 0.83708 1.90627 1.50785 1.69057 1.32464 1.22975 0.96809 0.94426 0.85379 0.87080 1.23432 0.93193 0.97595 1.03460 1.22652 0.95894 0.99526 0.94848 0.88723 1.21738 0.93360 1.02651 1.01997 1.22306 0.87710 0.85187 1.01272 0.86174 1.23975 0.83515 0.89190 0.72986 1.90762 1.20922 1.80391 1.45754 1.84499 1.43234 1.23326 1.81806 1.88626 1.38613 1.64094 1.32722 0.92800 0.92940 0.90947 0.91655 0.90937 0.94820 0.95607 0.92287 0.87611 0.89532 0.91943 0.91385 0.91377 0.73233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 10.21 37.16 0.38 -2.69 16 2 C 0.13 2.34 6.08 -4.04 -0.02 2.31 16 3 N -0.59 -12.29 2.47 -175.06 -0.43 -12.72 16 4 C 0.22 4.92 4.23 -5.19 -0.02 4.90 16 5 C -0.62 -15.87 9.01 -34.44 -0.31 -16.18 16 6 H 0.06 1.59 6.75 -52.49 -0.35 1.23 16 7 C 0.03 0.67 5.46 -17.82 -0.10 0.57 16 8 N -0.90 -24.85 13.65 55.43 0.76 -24.09 16 9 Si 1.07 24.07 29.90 -169.99 -5.08 18.99 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 13 C 0.52 11.22 7.00 -10.99 -0.08 11.15 16 14 O -0.55 -13.15 16.27 -13.72 -0.22 -13.37 16 15 C 0.06 1.24 2.90 -26.86 -0.08 1.16 16 16 H 0.11 2.36 7.63 -51.93 -0.40 1.96 16 17 C -0.14 -2.06 5.44 -24.49 -0.13 -2.19 16 18 C -0.11 -1.37 3.11 -88.68 -0.28 -1.65 16 19 H 0.09 1.19 7.84 -51.93 -0.41 0.78 16 20 C -0.14 -1.29 9.17 37.16 0.34 -0.95 16 21 C 0.10 1.37 3.66 -27.16 -0.10 1.27 16 22 H 0.12 1.44 7.75 -51.93 -0.40 1.03 16 23 C 0.46 6.71 7.52 36.00 0.27 6.99 16 24 O -0.49 -9.26 17.28 -25.40 -0.44 -9.70 16 25 O -0.52 -5.20 13.42 -39.25 -0.53 -5.73 16 26 O -0.32 -6.28 9.83 -64.41 -0.63 -6.91 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.46 6.66 -51.93 -0.35 1.12 16 30 H 0.07 1.16 7.64 -51.92 -0.40 0.77 16 31 H 0.07 1.24 7.90 -51.93 -0.41 0.83 16 32 H 0.03 0.74 4.09 -51.93 -0.21 0.52 16 33 H 0.03 0.60 7.82 -51.93 -0.41 0.19 16 34 H 0.27 7.10 7.22 -40.82 -0.29 6.81 16 35 H 0.11 1.57 6.32 -51.93 -0.33 1.24 16 36 H 0.09 1.20 7.95 -51.93 -0.41 0.78 16 37 H 0.06 0.53 8.06 -51.93 -0.42 0.11 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.41 2.43 9.10 45.56 0.41 2.85 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -33.46 333.24 -6.54 -40.00 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -4.86 Total: 3.82 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -0.13 Total: 4.69 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.32 Total: -36.81 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -1.82 Total: -35.72 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -5.08 Total: 18.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.46 -6.54 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299715.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.193 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds