Wall clock time and date at job start Tue Mar 31 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46493 * 109.47435 * 2 1 4 4 C 1.46501 * 120.00089 * 94.73692 * 3 2 1 5 5 C 1.50700 * 109.46871 * 275.66813 * 4 3 2 6 6 H 1.07998 * 120.00120 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99845 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99901 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99973 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47070 * 180.02562 * 9 7 5 11 11 H 1.48500 * 109.47378 * 299.99959 * 9 7 5 12 12 H 1.48495 * 109.47137 * 60.00338 * 9 7 5 13 13 C 1.34776 * 120.00220 * 274.73979 * 3 2 1 14 14 O 1.21288 * 119.99757 * 4.60697 * 13 3 2 15 15 C 1.50697 * 120.00302 * 184.61332 * 13 3 2 16 16 H 1.09003 * 110.27462 * 308.25124 * 15 13 3 17 17 C 1.54940 * 110.31347 * 70.34734 * 15 13 3 18 18 C 1.55302 * 100.94438 * 155.35973 * 17 15 13 19 19 H 1.09003 * 110.84641 * 84.06150 * 18 17 15 20 20 C 1.52996 * 110.84816 * 207.67312 * 18 17 15 21 21 C 1.54380 * 102.25504 * 325.86727 * 18 17 15 22 22 H 1.09001 * 109.82973 * 261.84647 * 21 18 17 23 23 C 1.50697 * 109.82921 * 140.95859 * 21 18 17 24 24 O 1.20831 * 120.00024 * 244.99931 * 23 21 18 25 25 O 1.34228 * 120.00121 * 65.00515 * 23 21 18 26 26 O 1.43240 * 107.58417 * 21.35393 * 21 18 17 27 27 H 1.08999 * 109.46698 * 63.43707 * 1 2 3 28 28 H 1.09000 * 109.47365 * 183.43789 * 1 2 3 29 29 H 1.08998 * 109.46861 * 303.43780 * 1 2 3 30 30 H 1.09008 * 109.46767 * 239.99559 * 2 1 3 31 31 H 1.08997 * 109.46843 * 120.00550 * 2 1 3 32 32 H 1.09004 * 109.47062 * 155.67304 * 4 3 2 33 33 H 1.09000 * 109.46955 * 35.66589 * 4 3 2 34 34 H 0.96998 * 120.00023 * 359.97438 * 8 7 5 35 35 H 1.09004 * 111.12569 * 273.28172 * 17 15 13 36 36 H 1.09002 * 111.12628 * 37.39650 * 17 15 13 37 37 H 1.09001 * 109.47084 * 60.00348 * 20 18 17 38 38 H 1.09005 * 109.47039 * 179.97438 * 20 18 17 39 39 H 1.09005 * 109.47734 * 300.00261 * 20 18 17 40 40 H 0.96698 * 116.99870 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3614 2.0368 1.2644 5 6 1.1155 2.6149 1.8846 6 1 0.1635 2.5052 1.3865 7 6 1.1910 3.2838 3.0879 8 7 2.3504 3.4177 3.6941 9 14 -0.3532 4.0009 3.8563 10 1 -0.0055 4.6654 5.1380 11 1 -0.9511 4.9956 2.9298 12 1 -1.3304 2.9124 4.1117 13 6 2.1522 2.0486 -1.1632 14 8 1.7900 1.5366 -2.2013 15 6 2.7518 3.4311 -1.1740 16 1 2.2442 4.0687 -0.4501 17 6 4.2676 3.3625 -0.8604 18 6 4.7678 4.6686 -1.5355 19 1 4.6386 5.5228 -0.8709 20 6 6.2282 4.5317 -1.9708 21 6 3.8370 4.7807 -2.7620 22 1 4.3423 4.3924 -3.6463 23 6 3.4543 6.2214 -2.9832 24 8 2.3029 6.5665 -2.8594 25 8 4.3923 7.1213 -3.3177 26 8 2.6665 4.0013 -2.4896 27 1 -0.3633 0.4596 -0.9192 28 1 -0.3634 -1.0258 0.0616 29 1 -0.3633 0.5663 0.8576 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.0782 2.8363 1.0764 33 1 2.8009 1.3072 1.9445 34 1 3.1523 3.0457 3.2949 35 1 4.4477 3.3819 0.2145 36 1 4.7238 2.4840 -1.3168 37 1 6.3197 3.7114 -2.6828 38 1 6.5555 5.4589 -2.4413 39 1 6.8497 4.3270 -1.0990 40 1 4.0987 8.0332 -3.4495 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596299715.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:22 Heat of formation + Delta-G solvation = -199.249326 kcal Electronic energy + Delta-G solvation = -23989.750925 eV Core-core repulsion = 20382.580381 eV Total energy + Delta-G solvation = -3607.170544 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.14061 -41.02673 -39.59250 -37.20254 -37.17158 -34.93122 -34.78535 -32.91760 -30.94058 -28.64083 -28.29614 -26.11770 -24.88261 -23.83951 -22.66434 -21.94168 -20.23518 -19.50391 -19.13923 -18.57899 -18.03123 -17.42826 -16.94176 -16.76776 -16.28626 -15.94686 -15.68638 -15.16407 -14.94862 -14.53103 -14.47601 -14.36440 -14.07749 -13.76596 -13.48407 -13.41688 -13.33019 -13.08989 -12.68562 -12.66056 -12.59730 -12.43577 -12.19656 -12.00781 -11.95699 -11.84796 -11.73267 -11.19759 -11.05092 -10.64887 -10.49593 -9.56252 -8.62753 -6.40090 1.01899 1.39671 1.53770 1.57540 1.62192 1.77582 2.09527 2.52125 2.74543 3.09067 3.12622 3.42898 3.63497 3.76588 3.89704 4.04968 4.17454 4.21017 4.34051 4.35260 4.46167 4.49453 4.54891 4.67285 4.79122 4.83052 4.89470 4.96832 5.00622 5.08720 5.31243 5.35478 5.40873 5.53645 5.71790 5.82825 6.10717 6.45184 6.59955 6.89469 7.12565 7.35183 8.73454 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.006017 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.660611 B = 4652.487512 C = 5459.511248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 N -0.588 5.588 4 C 0.228 3.772 5 C -0.623 4.623 6 H 0.042 0.958 7 C -0.013 4.013 8 N -0.924 5.924 9 Si 1.101 2.899 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.515 3.485 14 O -0.578 6.578 15 C 0.064 3.936 16 H 0.082 0.918 17 C -0.130 4.130 18 C -0.098 4.098 19 H 0.091 0.909 20 C -0.134 4.134 21 C 0.083 3.917 22 H 0.150 0.850 23 C 0.473 3.527 24 O -0.546 6.546 25 O -0.494 6.494 26 O -0.356 6.356 27 H 0.032 0.968 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.025 0.975 34 H 0.264 0.736 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.868 2.089 -9.093 13.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.005 4.005 3 N -0.319 5.319 4 C 0.107 3.893 5 C -0.662 4.662 6 H 0.060 0.940 7 C -0.214 4.214 8 N -0.561 5.561 9 Si 0.924 3.076 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.303 3.697 14 O -0.459 6.459 15 C 0.004 3.996 16 H 0.099 0.901 17 C -0.168 4.168 18 C -0.117 4.117 19 H 0.110 0.890 20 C -0.191 4.191 21 C 0.024 3.976 22 H 0.167 0.833 23 C 0.315 3.685 24 O -0.436 6.436 25 O -0.308 6.308 26 O -0.274 6.274 27 H 0.052 0.948 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 8.778 2.317 -8.357 12.339 hybrid contribution -0.179 -0.076 -1.099 1.116 sum 8.598 2.241 -9.456 12.976 Atomic orbital electron populations 1.22055 0.96107 1.02623 1.00862 1.21439 0.94904 0.81564 1.02595 1.48008 1.63142 1.14260 1.06534 1.19532 0.96103 0.93016 0.80654 1.22565 0.95218 1.39523 1.08856 0.93959 1.26806 1.04607 0.95124 0.94885 1.70933 0.99456 1.44510 1.41210 0.83094 0.72096 0.76536 0.75838 1.20406 1.20925 1.19799 1.20428 0.78693 0.87228 0.83353 1.90595 1.52022 1.70027 1.33261 1.22830 0.99325 0.92290 0.85204 0.90059 1.23411 0.90000 0.99655 1.03695 1.22654 0.97603 0.97891 0.93552 0.89032 1.21750 0.90547 1.03952 1.02828 1.22723 0.86708 0.84895 1.03254 0.83284 1.23965 0.83030 0.89741 0.71724 1.90752 1.23126 1.81273 1.48419 1.84438 1.41425 1.24378 1.80572 1.88577 1.41352 1.65053 1.32387 0.94849 0.89399 0.93228 0.90637 0.89196 0.93928 0.95720 0.92618 0.87786 0.88162 0.90875 0.89851 0.90282 0.70759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.76 10.21 71.98 0.73 -5.03 16 2 C 0.12 4.27 6.08 86.38 0.53 4.80 16 3 N -0.59 -24.66 2.47 -826.14 -2.04 -26.70 16 4 C 0.23 10.28 4.23 85.63 0.36 10.64 16 5 C -0.62 -32.41 9.01 25.60 0.23 -32.18 16 6 H 0.04 2.31 6.75 -2.91 -0.02 2.29 16 7 C -0.01 -0.71 5.46 84.65 0.46 -0.24 16 8 N -0.92 -50.68 13.65 21.45 0.29 -50.38 16 9 Si 1.10 48.45 29.90 68.60 2.05 50.50 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 13 C 0.52 22.50 7.00 87.66 0.61 23.11 16 14 O -0.58 -27.98 16.27 15.37 0.25 -27.73 16 15 C 0.06 2.50 2.90 30.51 0.09 2.59 16 16 H 0.08 3.62 7.63 -2.39 -0.02 3.60 16 17 C -0.13 -3.71 5.44 32.05 0.17 -3.53 16 18 C -0.10 -2.25 3.11 -9.54 -0.03 -2.28 16 19 H 0.09 2.15 7.84 -2.39 -0.02 2.14 16 20 C -0.13 -1.97 9.17 71.98 0.66 -1.31 16 21 C 0.08 2.28 3.66 30.32 0.11 2.39 16 22 H 0.15 3.18 7.75 -2.39 -0.02 3.16 16 23 C 0.47 13.20 7.52 71.23 0.54 13.74 16 24 O -0.55 -20.75 17.28 28.30 0.49 -20.26 16 25 O -0.49 -8.65 13.42 -51.40 -0.69 -9.34 16 26 O -0.36 -13.97 9.83 -121.08 -1.19 -15.16 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.05 2.01 6.66 -2.39 -0.02 2.00 16 30 H 0.08 2.61 7.64 -2.38 -0.02 2.60 16 31 H 0.09 2.95 7.90 -2.39 -0.02 2.93 16 32 H 0.04 1.87 4.09 -2.38 -0.01 1.86 16 33 H 0.02 1.13 7.82 -2.39 -0.02 1.11 16 34 H 0.26 14.07 7.22 -92.71 -0.67 13.40 16 35 H 0.10 3.00 6.32 -2.38 -0.02 2.98 16 36 H 0.10 2.58 7.95 -2.39 -0.02 2.56 16 37 H 0.07 0.96 8.06 -2.39 -0.02 0.94 16 38 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.43 3.97 9.10 -74.06 -0.67 3.30 16 Total: -1.00 -73.38 333.24 4.12 -69.26 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.49 Total: 17.11 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 4.47 Total: 12.70 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -1.75 Total: -77.09 kcal Atomic # 8 Polarization: -71.34 SS G_CDS: -1.14 Total: -72.48 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.05 Total: 50.50 kcal Total: -73.38 4.12 -69.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596299715.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.989 kcal (2) G-P(sol) polarization free energy of solvation -73.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds