Wall clock time and date at job start Tue Mar 31 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45194 * 109.47276 * 2 1 4 4 C 1.34238 * 116.99983 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99682 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99837 * 180.02562 * 4 3 2 7 7 H 1.08994 * 115.55200 * 34.26698 * 6 4 3 8 8 C 1.53009 * 117.49127 * 248.60181 * 6 4 3 9 9 C 1.53001 * 60.02947 * 252.49713 * 8 6 4 10 10 H 1.08999 * 117.49330 * 107.50428 * 9 8 6 11 11 C 1.52994 * 117.50054 * 252.51953 * 9 8 6 12 12 N 1.46505 * 109.47630 * 243.61286 * 11 9 8 13 13 C 1.36939 * 119.99897 * 265.36983 * 12 11 9 14 14 H 1.07990 * 119.99954 * 149.33612 * 13 12 11 15 15 C 1.38817 * 119.99921 * 329.33264 * 13 12 11 16 16 N 1.31626 * 119.99787 * 332.61967 * 15 13 12 17 17 Si 1.86798 * 119.99786 * 152.61688 * 15 13 12 18 18 H 1.48500 * 109.47057 * 85.00320 * 17 15 13 19 19 H 1.48507 * 109.47005 * 204.99864 * 17 15 13 20 20 H 1.48494 * 109.47395 * 325.00088 * 17 15 13 21 21 C 1.46491 * 119.99809 * 85.36006 * 12 11 9 22 22 C 1.53008 * 109.47043 * 90.00852 * 21 12 11 23 23 C 1.50702 * 109.47170 * 179.97438 * 22 21 12 24 24 O 1.20821 * 119.99827 * 359.97438 * 23 22 21 25 25 O 1.34225 * 119.99657 * 180.02562 * 23 22 21 26 26 H 1.08996 * 109.46985 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47295 * 300.00407 * 1 2 3 28 28 H 1.09003 * 109.46515 * 60.00211 * 1 2 3 29 29 H 1.09005 * 109.47102 * 239.99474 * 2 1 3 30 30 H 1.09003 * 109.47044 * 120.00343 * 2 1 3 31 31 H 1.08996 * 117.50213 * 0.02562 * 8 6 4 32 32 H 1.09005 * 117.49308 * 144.99918 * 8 6 4 33 33 H 1.09004 * 109.47343 * 3.61377 * 11 9 8 34 34 H 1.09002 * 109.47098 * 123.61183 * 11 9 8 35 35 H 0.96990 * 119.99271 * 180.02562 * 16 15 13 36 36 H 1.09006 * 109.47577 * 210.00339 * 21 12 11 37 37 H 1.08998 * 109.47879 * 330.00334 * 21 12 11 38 38 H 1.09009 * 109.46778 * 299.99686 * 22 21 12 39 39 H 1.09003 * 109.47223 * 59.99544 * 22 21 12 40 40 H 0.96703 * 116.99775 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.3499 3.6820 0.5544 8 6 4.6478 3.4014 -1.2638 9 6 5.4456 3.0718 -0.0006 10 1 6.0322 2.1531 -0.0013 11 6 6.0519 4.2414 0.7774 12 7 7.5129 4.1349 0.7595 13 6 8.1676 3.5234 1.7952 14 1 9.0968 3.0035 1.6148 15 6 7.6368 3.5717 3.0770 16 7 6.8685 4.5792 3.4335 17 14 8.0129 2.2068 4.2956 18 1 9.3036 2.4900 4.9731 19 1 6.9283 2.1340 5.3075 20 1 8.1056 0.9117 3.5752 21 6 8.2735 4.6826 -0.3664 22 6 8.6390 6.1394 -0.0745 23 6 9.4220 6.7026 -1.2325 24 8 9.6632 6.0097 -2.1925 25 8 9.8521 7.9735 -1.1968 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.7090 2.6998 -2.0956 32 1 4.5551 4.4517 -1.5407 33 1 5.7504 5.1810 0.3144 34 1 5.6982 4.2144 1.8081 35 1 6.4980 4.6131 4.3292 36 1 9.1844 4.1006 -0.5070 37 1 7.6682 4.6342 -1.2716 38 1 7.7281 6.7214 0.0660 39 1 9.2444 6.1877 0.8307 40 1 10.3499 8.2901 -1.9631 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596685821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:15 Heat of formation + Delta-G solvation = -141.534207 kcal Electronic energy + Delta-G solvation = -22566.746873 eV Core-core repulsion = 18962.079045 eV Total energy + Delta-G solvation = -3604.667829 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.31434 -39.80106 -37.57002 -36.25450 -35.79154 -34.94741 -32.06294 -31.75257 -29.85255 -26.70325 -24.88365 -24.74186 -22.65715 -21.92857 -20.71216 -20.06272 -19.36993 -17.73701 -17.66734 -16.76508 -16.42153 -16.23149 -15.84495 -15.56998 -14.77190 -14.24242 -13.99740 -13.72923 -13.60188 -13.32319 -12.90283 -12.81823 -12.43028 -12.18204 -11.98810 -11.73882 -11.60823 -11.42284 -11.18454 -11.04859 -10.82759 -10.67325 -10.48784 -10.46838 -10.36619 -10.16166 -10.12994 -9.93575 -9.71201 -9.33090 -8.52222 -6.83306 -5.92732 -3.37879 2.40602 2.63795 2.79940 3.34974 3.43632 3.46679 3.54470 4.24013 4.45332 4.83211 4.84600 4.96248 5.09854 5.18936 5.22193 5.32456 5.47368 5.54779 5.63419 5.66889 5.77571 5.81934 5.84812 5.95798 6.08818 6.23857 6.35574 6.38915 6.61422 6.65221 6.69461 6.78805 6.98288 6.99795 7.54076 7.76043 8.04586 8.26923 8.37145 9.06513 9.71146 10.24320 11.09868 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.004667 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.232570 B = 5997.896260 C = 7648.019203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.359 6.359 4 C 0.493 3.507 5 O -0.507 6.507 6 C -0.180 4.180 7 H 0.131 0.869 8 C -0.157 4.157 9 C -0.105 4.105 10 H 0.117 0.883 11 C 0.167 3.833 12 N -0.575 5.575 13 C -0.265 4.265 14 H 0.067 0.933 15 C 0.014 3.986 16 N -0.883 5.883 17 Si 0.892 3.108 18 H -0.285 1.285 19 H -0.289 1.289 20 H -0.277 1.277 21 C 0.160 3.840 22 C -0.132 4.132 23 C 0.478 3.522 24 O -0.528 6.528 25 O -0.525 6.525 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.033 0.967 34 H 0.110 0.890 35 H 0.257 0.743 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.824 0.169 -7.413 10.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.276 6.276 4 C 0.337 3.663 5 O -0.395 6.395 6 C -0.200 4.200 7 H 0.148 0.852 8 C -0.194 4.194 9 C -0.126 4.126 10 H 0.135 0.865 11 C 0.041 3.959 12 N -0.293 5.293 13 C -0.394 4.394 14 H 0.085 0.915 15 C -0.186 4.186 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.212 1.212 19 H -0.215 1.215 20 H -0.202 1.202 21 C 0.033 3.967 22 C -0.173 4.173 23 C 0.322 3.678 24 O -0.417 6.417 25 O -0.336 6.336 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.051 0.949 34 H 0.127 0.873 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -7.859 -0.462 -7.150 10.634 hybrid contribution 0.334 -0.596 0.220 0.717 sum -7.525 -1.057 -6.930 10.285 Atomic orbital electron populations 1.21791 0.92842 1.02701 1.03462 1.22973 0.95166 0.80840 1.02475 1.86506 1.25007 1.31758 1.84364 1.22909 0.79973 0.91684 0.71724 1.90650 1.60443 1.42947 1.45416 1.21863 0.98787 0.92246 1.07064 0.85155 1.23138 1.03216 1.01900 0.91130 1.23835 0.87645 1.04236 0.96858 0.86540 1.20692 0.83371 0.90342 1.01541 1.43890 1.00535 1.64489 1.20405 1.19099 1.07848 1.26434 0.86021 0.91516 1.24960 1.00170 0.96892 0.96618 1.70033 1.36302 1.27231 1.18903 0.86481 0.77514 0.83150 0.80729 1.21154 1.21481 1.20250 1.20802 0.96366 0.88705 0.90836 1.22440 0.99599 1.00697 0.94555 1.24404 0.76261 0.78430 0.88733 1.90657 1.55393 1.59860 1.35740 1.84661 1.68516 1.31362 1.49061 0.90468 0.91469 0.91576 0.91493 0.91340 0.89202 0.87833 0.94891 0.87315 0.93358 0.92720 0.93369 0.88611 0.87476 0.74501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 37.16 0.38 -0.93 16 2 C 0.06 0.73 6.19 37.16 0.23 0.96 16 3 O -0.36 -5.47 10.22 -39.28 -0.40 -5.87 16 4 C 0.49 8.71 7.74 36.00 0.28 8.99 16 5 O -0.51 -10.38 16.01 -18.75 -0.30 -10.68 16 6 C -0.18 -3.02 6.02 -91.73 -0.55 -3.57 16 7 H 0.13 2.00 8.14 -51.93 -0.42 1.57 16 8 C -0.16 -2.42 9.88 -26.73 -0.26 -2.69 16 9 C -0.10 -2.02 5.53 -90.59 -0.50 -2.52 16 10 H 0.12 2.58 7.67 -51.93 -0.40 2.18 16 11 C 0.17 3.57 5.55 -4.04 -0.02 3.55 16 12 N -0.57 -13.23 2.47 -173.24 -0.43 -13.66 16 13 C -0.27 -6.85 9.48 -15.06 -0.14 -6.99 16 14 H 0.07 1.74 7.96 -52.49 -0.42 1.32 16 15 C 0.01 0.37 4.82 -17.43 -0.08 0.28 16 16 N -0.88 -23.73 11.44 55.49 0.64 -23.09 16 17 Si 0.89 21.18 29.63 -169.99 -5.04 16.14 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.16 3.22 4.98 -4.04 -0.02 3.20 16 22 C -0.13 -2.38 6.14 -27.88 -0.17 -2.55 16 23 C 0.48 7.89 8.33 36.01 0.30 8.19 16 24 O -0.53 -9.91 16.74 -18.75 -0.31 -10.22 16 25 O -0.52 -7.04 13.42 -39.24 -0.53 -7.57 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 30 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.10 1.41 8.03 -51.93 -0.42 0.99 16 33 H 0.03 0.65 7.84 -51.93 -0.41 0.24 16 34 H 0.11 2.67 5.30 -51.93 -0.28 2.39 16 35 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.05 1.14 8.00 -51.93 -0.42 0.73 16 37 H 0.05 0.92 8.03 -51.93 -0.42 0.51 16 38 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 39 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 40 H 0.40 3.40 9.10 45.56 0.41 3.82 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -30.81 349.72 -6.94 -37.75 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.27 Total: 6.02 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -0.57 Total: 5.92 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.21 Total: -36.75 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.54 Total: -34.35 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.04 Total: 16.14 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.81 -6.94 -37.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596685821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.781 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds