Wall clock time and date at job start Tue Mar 31 2020 06:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45194 * 109.47276 * 2 1 4 4 C 1.34238 * 116.99983 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99682 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99837 * 180.02562 * 4 3 2 7 7 H 1.08994 * 115.55200 * 34.26698 * 6 4 3 8 8 C 1.53009 * 117.49127 * 248.60181 * 6 4 3 9 9 C 1.53001 * 60.02947 * 252.49713 * 8 6 4 10 10 H 1.08999 * 117.49330 * 107.50428 * 9 8 6 11 11 C 1.52994 * 117.50054 * 252.51953 * 9 8 6 12 12 N 1.46505 * 109.47630 * 243.61286 * 11 9 8 13 13 C 1.36939 * 119.99897 * 265.36983 * 12 11 9 14 14 H 1.07990 * 119.99954 * 149.33612 * 13 12 11 15 15 C 1.38817 * 119.99921 * 329.33264 * 13 12 11 16 16 N 1.31626 * 119.99787 * 332.61967 * 15 13 12 17 17 Si 1.86798 * 119.99786 * 152.61688 * 15 13 12 18 18 H 1.48500 * 109.47057 * 85.00320 * 17 15 13 19 19 H 1.48507 * 109.47005 * 204.99864 * 17 15 13 20 20 H 1.48494 * 109.47395 * 325.00088 * 17 15 13 21 21 C 1.46491 * 119.99809 * 85.36006 * 12 11 9 22 22 C 1.53008 * 109.47043 * 90.00852 * 21 12 11 23 23 C 1.50702 * 109.47170 * 179.97438 * 22 21 12 24 24 O 1.20821 * 119.99827 * 359.97438 * 23 22 21 25 25 O 1.34225 * 119.99657 * 180.02562 * 23 22 21 26 26 H 1.08996 * 109.46985 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47295 * 300.00407 * 1 2 3 28 28 H 1.09003 * 109.46515 * 60.00211 * 1 2 3 29 29 H 1.09005 * 109.47102 * 239.99474 * 2 1 3 30 30 H 1.09003 * 109.47044 * 120.00343 * 2 1 3 31 31 H 1.08996 * 117.50213 * 0.02562 * 8 6 4 32 32 H 1.09005 * 117.49308 * 144.99918 * 8 6 4 33 33 H 1.09004 * 109.47343 * 3.61377 * 11 9 8 34 34 H 1.09002 * 109.47098 * 123.61183 * 11 9 8 35 35 H 0.96990 * 119.99271 * 180.02562 * 16 15 13 36 36 H 1.09006 * 109.47577 * 210.00339 * 21 12 11 37 37 H 1.08998 * 109.47879 * 330.00334 * 21 12 11 38 38 H 1.09009 * 109.46778 * 299.99686 * 22 21 12 39 39 H 1.09003 * 109.47223 * 59.99544 * 22 21 12 40 40 H 0.96703 * 116.99775 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.3499 3.6820 0.5544 8 6 4.6478 3.4014 -1.2638 9 6 5.4456 3.0718 -0.0006 10 1 6.0322 2.1531 -0.0013 11 6 6.0519 4.2414 0.7774 12 7 7.5129 4.1349 0.7595 13 6 8.1676 3.5234 1.7952 14 1 9.0968 3.0035 1.6148 15 6 7.6368 3.5717 3.0770 16 7 6.8685 4.5792 3.4335 17 14 8.0129 2.2068 4.2956 18 1 9.3036 2.4900 4.9731 19 1 6.9283 2.1340 5.3075 20 1 8.1056 0.9117 3.5752 21 6 8.2735 4.6826 -0.3664 22 6 8.6390 6.1394 -0.0745 23 6 9.4220 6.7026 -1.2325 24 8 9.6632 6.0097 -2.1925 25 8 9.8521 7.9735 -1.1968 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.7090 2.6998 -2.0956 32 1 4.5551 4.4517 -1.5407 33 1 5.7504 5.1810 0.3144 34 1 5.6982 4.2144 1.8081 35 1 6.4980 4.6131 4.3292 36 1 9.1844 4.1006 -0.5070 37 1 7.6682 4.6342 -1.2716 38 1 7.7281 6.7214 0.0660 39 1 9.2444 6.1877 0.8307 40 1 10.3499 8.2901 -1.9631 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596685821.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:14 Heat of formation + Delta-G solvation = -159.447497 kcal Electronic energy + Delta-G solvation = -22567.523652 eV Core-core repulsion = 18962.079045 eV Total energy + Delta-G solvation = -3605.444607 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.66483 -41.11827 -38.98963 -37.69869 -37.05973 -36.51744 -33.89330 -32.65756 -31.50795 -28.36323 -26.52937 -26.09885 -23.64682 -23.49121 -22.08548 -21.49643 -20.90215 -19.16259 -19.01463 -18.40574 -17.70107 -17.53052 -17.22502 -16.96447 -16.65240 -15.54356 -15.46173 -15.41026 -14.93031 -14.72489 -14.18627 -14.01192 -13.68447 -13.54582 -13.34305 -13.18564 -12.95921 -12.77820 -12.62888 -12.51054 -12.45014 -12.31909 -12.22526 -12.08583 -11.71303 -11.58946 -11.55923 -11.50439 -11.25681 -10.90217 -10.40615 -8.71193 -7.89535 -5.36135 1.01985 1.31348 1.42968 1.48611 1.57066 1.60002 2.25865 2.52935 2.86191 3.19898 3.59866 3.71425 3.93624 3.96796 4.05244 4.07887 4.19824 4.26084 4.29912 4.31064 4.63848 4.69559 4.77046 4.85042 4.87517 4.89916 4.98392 5.09939 5.11307 5.17043 5.32198 5.37288 5.42011 5.69398 5.70228 5.80322 6.42646 6.70662 7.11016 7.15357 7.84329 8.32590 9.09376 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.004667 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.232570 B = 5997.896260 C = 7648.019203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 O -0.356 6.356 4 C 0.494 3.506 5 O -0.544 6.544 6 C -0.176 4.176 7 H 0.148 0.852 8 C -0.122 4.122 9 C -0.130 4.130 10 H 0.080 0.920 11 C 0.174 3.826 12 N -0.589 5.589 13 C -0.271 4.271 14 H 0.055 0.945 15 C -0.022 4.022 16 N -0.901 5.901 17 Si 0.937 3.063 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.287 1.287 21 C 0.164 3.836 22 C -0.123 4.123 23 C 0.494 3.506 24 O -0.551 6.551 25 O -0.515 6.515 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.254 0.746 36 H 0.039 0.961 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.024 1.096 -8.629 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 O -0.273 6.273 4 C 0.339 3.661 5 O -0.434 6.434 6 C -0.195 4.195 7 H 0.166 0.834 8 C -0.159 4.159 9 C -0.151 4.151 10 H 0.099 0.901 11 C 0.048 3.952 12 N -0.308 5.308 13 C -0.401 4.401 14 H 0.073 0.927 15 C -0.221 4.221 16 N -0.544 5.544 17 Si 0.766 3.234 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.213 1.213 21 C 0.037 3.963 22 C -0.164 4.164 23 C 0.338 3.662 24 O -0.443 6.443 25 O -0.328 6.328 26 H 0.120 0.880 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.151 0.849 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.122 0.878 39 H 0.110 0.890 40 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -9.063 0.501 -8.387 12.359 hybrid contribution 0.702 -0.883 0.522 1.243 sum -8.361 -0.383 -7.865 11.486 Atomic orbital electron populations 1.21815 0.89757 1.04502 1.03879 1.23344 0.97543 0.79291 1.02317 1.86500 1.23437 1.33694 1.83629 1.23076 0.80598 0.91571 0.70833 1.90638 1.61425 1.44100 1.47277 1.21942 0.97042 0.92367 1.08174 0.83393 1.23242 0.99138 1.03696 0.89851 1.23352 0.88973 1.02228 1.00560 0.90137 1.20539 0.82486 0.91926 1.00245 1.43996 1.01439 1.65133 1.20242 1.19195 1.07575 1.26330 0.86958 0.92723 1.25385 1.00811 0.98178 0.97702 1.70104 1.37302 1.28073 1.18931 0.85777 0.77399 0.80984 0.79234 1.20526 1.21653 1.21266 1.20719 0.95630 0.89729 0.90215 1.22079 1.00121 0.99542 0.94625 1.23771 0.75766 0.79115 0.87563 1.90664 1.56371 1.60753 1.36470 1.84568 1.68402 1.29365 1.50495 0.87962 0.91328 0.90838 0.91271 0.92043 0.88392 0.84937 0.92988 0.90495 0.93673 0.94227 0.92154 0.87798 0.88983 0.71516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 10.29 71.98 0.74 -1.41 16 2 C 0.05 1.13 6.19 71.98 0.45 1.58 16 3 O -0.36 -10.45 10.22 -51.50 -0.53 -10.97 16 4 C 0.49 17.22 7.74 71.24 0.55 17.77 16 5 O -0.54 -22.64 16.01 21.98 0.35 -22.29 16 6 C -0.18 -5.69 6.02 -11.51 -0.07 -5.76 16 7 H 0.15 4.26 8.14 -2.39 -0.02 4.24 16 8 C -0.12 -3.51 9.88 30.60 0.30 -3.21 16 9 C -0.13 -5.01 5.53 -10.77 -0.06 -5.07 16 10 H 0.08 3.70 7.67 -2.39 -0.02 3.68 16 11 C 0.17 7.44 5.55 86.38 0.48 7.92 16 12 N -0.59 -27.42 2.47 -702.00 -1.74 -29.16 16 13 C -0.27 -14.32 9.48 84.03 0.80 -13.52 16 14 H 0.06 2.95 7.96 -2.92 -0.02 2.93 16 15 C -0.02 -1.19 4.82 84.86 0.41 -0.78 16 16 N -0.90 -49.13 11.44 21.65 0.25 -48.88 16 17 Si 0.94 44.41 29.63 68.60 2.03 46.44 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 21 C 0.16 6.54 4.98 86.38 0.43 6.97 16 22 C -0.12 -4.31 6.14 29.85 0.18 -4.13 16 23 C 0.49 15.34 8.33 71.24 0.59 15.93 16 24 O -0.55 -19.79 16.74 21.98 0.37 -19.43 16 25 O -0.51 -12.32 13.42 -51.37 -0.69 -13.01 16 26 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.58 8.13 -2.38 -0.02 1.56 16 30 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 31 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.13 3.07 8.03 -2.38 -0.02 3.05 16 33 H 0.05 1.97 7.84 -2.38 -0.02 1.95 16 34 H 0.08 3.83 5.30 -2.39 -0.01 3.82 16 35 H 0.25 13.49 8.31 -92.72 -0.77 12.72 16 36 H 0.04 1.68 8.00 -2.38 -0.02 1.66 16 37 H 0.06 2.24 8.03 -2.39 -0.02 2.23 16 38 H 0.10 3.48 8.14 -2.38 -0.02 3.46 16 39 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 40 H 0.42 5.80 9.10 -74.06 -0.67 5.12 16 Total: -1.00 -67.43 349.72 5.22 -62.20 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.37 Total: 18.80 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 4.80 Total: 16.29 kcal Atomic # 7 Polarization: -76.55 SS G_CDS: -1.49 Total: -78.04 kcal Atomic # 8 Polarization: -65.21 SS G_CDS: -0.50 Total: -65.70 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -67.43 5.22 -62.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596685821.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.243 kcal (2) G-P(sol) polarization free energy of solvation -67.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds