Wall clock time and date at job start Tue Mar 31 2020 05:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47383 * 2 1 4 4 H 1.09000 * 110.27576 * 52.91209 * 3 2 1 5 5 O 1.43645 * 110.39447 * 290.76330 * 3 2 1 6 6 C 1.43243 * 109.97188 * 216.61471 * 5 3 2 7 7 C 1.54375 * 107.59004 * 1.70722 * 6 5 3 8 8 C 1.54952 * 110.31154 * 175.00257 * 3 2 1 9 9 H 1.09001 * 111.12438 * 37.49691 * 8 3 2 10 10 C 1.50703 * 111.12422 * 273.37397 * 8 3 2 11 11 O 1.21294 * 119.99947 * 328.73780 * 10 8 3 12 12 N 1.34773 * 120.00017 * 148.72822 * 10 8 3 13 13 C 1.37105 * 119.99713 * 4.92931 * 12 10 8 14 14 H 1.07991 * 120.00159 * 34.50217 * 13 12 10 15 15 C 1.38947 * 119.99659 * 214.76867 * 13 12 10 16 16 N 1.31409 * 120.00156 * 20.98674 * 15 13 12 17 17 Si 1.86800 * 119.99770 * 200.97646 * 15 13 12 18 18 H 1.48504 * 109.46971 * 90.00895 * 17 15 13 19 19 H 1.48506 * 109.47200 * 210.00424 * 17 15 13 20 20 H 1.48493 * 109.47527 * 330.00528 * 17 15 13 21 21 C 1.46499 * 120.00079 * 184.92819 * 12 10 8 22 22 C 1.53002 * 109.47176 * 270.00022 * 21 12 10 23 23 C 1.50700 * 109.46809 * 180.02562 * 22 21 12 24 24 O 1.20818 * 120.00473 * 0.02562 * 23 22 21 25 25 O 1.34235 * 119.99498 * 180.02562 * 23 22 21 26 26 H 1.09000 * 109.47162 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46887 * 300.00145 * 1 2 3 28 28 H 1.08997 * 109.47258 * 59.99759 * 1 2 3 29 29 H 1.08995 * 109.46975 * 239.99735 * 2 1 3 30 30 H 1.09005 * 109.46972 * 120.00195 * 2 1 3 31 31 H 1.09000 * 109.83125 * 121.22510 * 6 5 3 32 32 H 1.08998 * 109.82780 * 242.10474 * 6 5 3 33 33 H 1.08993 * 110.85369 * 263.16879 * 7 6 5 34 34 H 1.09000 * 110.84904 * 139.54616 * 7 6 5 35 35 H 0.97002 * 120.00254 * 184.46608 * 16 15 13 36 36 H 1.08998 * 109.46850 * 30.00471 * 21 12 10 37 37 H 1.09007 * 109.47075 * 150.00181 * 21 12 10 38 38 H 1.08994 * 109.46924 * 300.00210 * 22 21 12 39 39 H 1.08996 * 109.46618 * 60.00455 * 22 21 12 40 40 H 0.96700 * 116.99357 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5846 2.0041 0.8156 5 8 1.7569 2.0735 -1.2590 6 6 2.8319 2.9486 -1.6203 7 6 3.9114 2.8396 -0.5222 8 6 3.5842 1.4669 0.1266 9 1 4.0373 0.6489 -0.4335 10 6 4.0113 1.4336 1.5714 11 8 3.3123 1.9421 2.4224 12 7 5.1698 0.8386 1.9181 13 6 6.0082 0.3531 0.9480 14 1 6.0923 0.8656 0.0011 15 6 6.7455 -0.8013 1.1811 16 7 6.3647 -1.6474 2.1116 17 14 8.2778 -1.1506 0.1714 18 1 9.4606 -0.5572 0.8454 19 1 8.4642 -2.6186 0.0463 20 1 8.1269 -0.5539 -1.1800 21 6 5.5332 0.7105 3.3315 22 6 6.3318 1.9411 3.7663 23 6 6.7061 1.8090 5.2201 24 8 6.3693 0.8309 5.8442 25 8 7.4138 2.7781 5.8216 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.2490 2.6449 -2.5804 32 1 2.4685 3.9743 -1.6830 33 1 3.8091 3.6460 0.2039 34 1 4.9100 2.8338 -0.9591 35 1 6.9137 -2.4198 2.3189 36 1 4.6280 0.6333 3.9338 37 1 6.1399 -0.1843 3.4711 38 1 7.2368 2.0182 3.1640 39 1 5.7250 2.8357 3.6268 40 1 7.6305 2.6485 6.7550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597303678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:37 Heat of formation + Delta-G solvation = -184.491557 kcal Electronic energy + Delta-G solvation = -23803.191229 eV Core-core repulsion = 20196.660630 eV Total energy + Delta-G solvation = -3606.530599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.94334 -39.62360 -37.89952 -35.82737 -35.03455 -33.18602 -32.11107 -31.84207 -30.39690 -27.97531 -25.34453 -24.53376 -23.07019 -21.70013 -20.60194 -20.15021 -19.13702 -17.81268 -17.29086 -16.57102 -15.97497 -15.71722 -15.39003 -15.14791 -14.61019 -14.51250 -13.84976 -13.73266 -13.46629 -12.94897 -12.89617 -12.69112 -12.61262 -12.47750 -12.01398 -11.49910 -11.38160 -11.30119 -11.20236 -11.14615 -10.97084 -10.82602 -10.52603 -10.45819 -10.31699 -10.16345 -10.10201 -10.06301 -9.29417 -9.08672 -8.56007 -7.73742 -6.48088 -4.23464 2.64293 3.02653 3.14375 3.16351 3.37427 3.66316 4.00126 4.18408 4.66796 4.81631 5.01338 5.27502 5.34230 5.49845 5.56918 5.58777 5.64715 5.76724 5.83020 5.91935 5.99914 6.02385 6.16995 6.19648 6.25480 6.30903 6.34454 6.36261 6.52048 6.65503 6.77822 6.78795 6.83217 7.22581 7.37230 7.41741 7.72252 8.20800 8.28251 8.92781 9.33137 9.75553 10.49793 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.006301 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.245846 B = 4442.854677 C = 5430.786469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.097 3.903 4 H 0.083 0.917 5 O -0.384 6.384 6 C 0.056 3.944 7 C -0.139 4.139 8 C -0.124 4.124 9 H 0.111 0.889 10 C 0.483 3.517 11 O -0.601 6.601 12 N -0.434 5.434 13 C -0.345 4.345 14 H 0.093 0.907 15 C 0.045 3.955 16 N -0.848 5.848 17 Si 0.912 3.088 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.267 1.267 21 C 0.121 3.879 22 C -0.123 4.123 23 C 0.483 3.517 24 O -0.514 6.514 25 O -0.525 6.525 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.272 0.728 36 H 0.064 0.936 37 H 0.121 0.879 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.352 5.652 -2.646 6.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C 0.040 3.960 4 H 0.100 0.900 5 O -0.304 6.304 6 C -0.021 4.021 7 C -0.178 4.178 8 C -0.145 4.145 9 H 0.129 0.871 10 C 0.271 3.729 11 O -0.487 6.487 12 N -0.151 5.151 13 C -0.472 4.472 14 H 0.111 0.889 15 C -0.163 4.163 16 N -0.484 5.484 17 Si 0.738 3.262 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.192 1.192 21 C -0.003 4.003 22 C -0.162 4.162 23 C 0.325 3.675 24 O -0.402 6.402 25 O -0.336 6.336 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.139 0.861 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -1.030 5.396 -2.548 6.056 hybrid contribution 1.401 -0.286 0.294 1.460 sum 0.372 5.110 -2.253 5.597 Atomic orbital electron populations 1.21699 0.95799 1.00987 1.01786 1.21621 0.96104 0.95057 1.02895 1.22912 0.93195 0.93922 0.85996 0.89970 1.88336 1.42553 1.60508 1.39000 1.23027 0.87496 0.93933 0.97619 1.22981 0.99785 0.97183 0.97824 1.22764 0.96072 0.99226 0.96464 0.87089 1.19993 0.81070 0.82519 0.89278 1.90538 1.54931 1.51249 1.51963 1.43429 1.15956 1.50435 1.05280 1.19459 1.22194 1.07590 0.97981 0.88914 1.25380 0.99531 0.93759 0.97610 1.69927 1.35640 1.10953 1.31845 0.86171 0.81922 0.77829 0.80306 1.20166 1.20822 1.19173 1.21284 0.99580 0.96840 0.82635 1.21834 1.03393 1.03830 0.87177 1.23791 0.73510 0.79268 0.90926 1.90700 1.51582 1.31317 1.66561 1.84593 1.68707 1.49202 1.31137 0.93159 0.92960 0.92496 0.91472 0.90455 0.91667 0.91974 0.90578 0.89783 0.91721 0.91721 0.86112 0.87770 0.88517 0.74133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.85 37.16 0.37 -1.79 16 2 C -0.12 -2.06 5.67 -26.74 -0.15 -2.21 16 3 C 0.10 1.79 2.80 -25.70 -0.07 1.71 16 4 H 0.08 1.65 7.24 -51.93 -0.38 1.27 16 5 O -0.38 -6.66 10.81 -35.23 -0.38 -7.04 16 6 C 0.06 0.82 7.79 37.88 0.30 1.12 16 7 C -0.14 -2.26 6.49 -24.79 -0.16 -2.42 16 8 C -0.12 -2.40 2.09 -89.52 -0.19 -2.58 16 9 H 0.11 2.23 6.73 -51.93 -0.35 1.88 16 10 C 0.48 11.00 6.75 -10.99 -0.07 10.93 16 11 O -0.60 -14.97 15.59 5.54 0.09 -14.88 16 12 N -0.43 -10.18 2.54 -114.81 -0.29 -10.47 16 13 C -0.34 -8.04 8.19 -14.93 -0.12 -8.16 16 14 H 0.09 2.05 7.18 -52.49 -0.38 1.67 16 15 C 0.04 1.05 5.00 -17.47 -0.09 0.96 16 16 N -0.85 -21.48 11.23 55.50 0.62 -20.85 16 17 Si 0.91 18.35 29.61 -169.99 -5.03 13.32 16 18 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 21 C 0.12 2.80 4.26 -4.04 -0.02 2.78 16 22 C -0.12 -2.38 6.14 -27.88 -0.17 -2.55 16 23 C 0.48 8.78 8.33 36.01 0.30 9.08 16 24 O -0.51 -10.87 16.74 -18.74 -0.31 -11.18 16 25 O -0.52 -7.43 13.42 -39.27 -0.53 -7.95 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 28 H 0.06 0.82 7.99 -51.93 -0.42 0.40 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.26 8.03 -51.93 -0.42 0.85 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 36 H 0.06 1.61 7.45 -51.93 -0.39 1.23 16 37 H 0.12 3.05 5.25 -51.93 -0.27 2.78 16 38 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 39 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 40 H 0.40 3.73 9.10 45.56 0.41 4.15 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -29.23 335.17 -5.99 -35.22 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -5.12 Total: 11.93 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -0.08 Total: 6.87 kcal Atomic # 7 Polarization: -31.66 SS G_CDS: 0.33 Total: -31.32 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -1.14 Total: -41.06 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.23 -5.99 -35.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597303678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.275 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds