Wall clock time and date at job start Tue Mar 31 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47383 * 2 1 4 4 H 1.09000 * 110.27576 * 52.91209 * 3 2 1 5 5 O 1.43645 * 110.39447 * 290.76330 * 3 2 1 6 6 C 1.43243 * 109.97188 * 216.61471 * 5 3 2 7 7 C 1.54375 * 107.59004 * 1.70722 * 6 5 3 8 8 C 1.54952 * 110.31154 * 175.00257 * 3 2 1 9 9 H 1.09001 * 111.12438 * 37.49691 * 8 3 2 10 10 C 1.50703 * 111.12422 * 273.37397 * 8 3 2 11 11 O 1.21294 * 119.99947 * 328.73780 * 10 8 3 12 12 N 1.34773 * 120.00017 * 148.72822 * 10 8 3 13 13 C 1.37105 * 119.99713 * 4.92931 * 12 10 8 14 14 H 1.07991 * 120.00159 * 34.50217 * 13 12 10 15 15 C 1.38947 * 119.99659 * 214.76867 * 13 12 10 16 16 N 1.31409 * 120.00156 * 20.98674 * 15 13 12 17 17 Si 1.86800 * 119.99770 * 200.97646 * 15 13 12 18 18 H 1.48504 * 109.46971 * 90.00895 * 17 15 13 19 19 H 1.48506 * 109.47200 * 210.00424 * 17 15 13 20 20 H 1.48493 * 109.47527 * 330.00528 * 17 15 13 21 21 C 1.46499 * 120.00079 * 184.92819 * 12 10 8 22 22 C 1.53002 * 109.47176 * 270.00022 * 21 12 10 23 23 C 1.50700 * 109.46809 * 180.02562 * 22 21 12 24 24 O 1.20818 * 120.00473 * 0.02562 * 23 22 21 25 25 O 1.34235 * 119.99498 * 180.02562 * 23 22 21 26 26 H 1.09000 * 109.47162 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46887 * 300.00145 * 1 2 3 28 28 H 1.08997 * 109.47258 * 59.99759 * 1 2 3 29 29 H 1.08995 * 109.46975 * 239.99735 * 2 1 3 30 30 H 1.09005 * 109.46972 * 120.00195 * 2 1 3 31 31 H 1.09000 * 109.83125 * 121.22510 * 6 5 3 32 32 H 1.08998 * 109.82780 * 242.10474 * 6 5 3 33 33 H 1.08993 * 110.85369 * 263.16879 * 7 6 5 34 34 H 1.09000 * 110.84904 * 139.54616 * 7 6 5 35 35 H 0.97002 * 120.00254 * 184.46608 * 16 15 13 36 36 H 1.08998 * 109.46850 * 30.00471 * 21 12 10 37 37 H 1.09007 * 109.47075 * 150.00181 * 21 12 10 38 38 H 1.08994 * 109.46924 * 300.00210 * 22 21 12 39 39 H 1.08996 * 109.46618 * 60.00455 * 22 21 12 40 40 H 0.96700 * 116.99357 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5846 2.0041 0.8156 5 8 1.7569 2.0735 -1.2590 6 6 2.8319 2.9486 -1.6203 7 6 3.9114 2.8396 -0.5222 8 6 3.5842 1.4669 0.1266 9 1 4.0373 0.6489 -0.4335 10 6 4.0113 1.4336 1.5714 11 8 3.3123 1.9421 2.4224 12 7 5.1698 0.8386 1.9181 13 6 6.0082 0.3531 0.9480 14 1 6.0923 0.8656 0.0011 15 6 6.7455 -0.8013 1.1811 16 7 6.3647 -1.6474 2.1116 17 14 8.2778 -1.1506 0.1714 18 1 9.4606 -0.5572 0.8454 19 1 8.4642 -2.6186 0.0463 20 1 8.1269 -0.5539 -1.1800 21 6 5.5332 0.7105 3.3315 22 6 6.3318 1.9411 3.7663 23 6 6.7061 1.8090 5.2201 24 8 6.3693 0.8309 5.8442 25 8 7.4138 2.7781 5.8216 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.2490 2.6449 -2.5804 32 1 2.4685 3.9743 -1.6830 33 1 3.8091 3.6460 0.2039 34 1 4.9100 2.8338 -0.9591 35 1 6.9137 -2.4198 2.3189 36 1 4.6280 0.6333 3.9338 37 1 6.1399 -0.1843 3.4711 38 1 7.2368 2.0182 3.1640 39 1 5.7250 2.8357 3.6268 40 1 7.6305 2.6485 6.7550 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597303678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:35 Heat of formation + Delta-G solvation = -203.427943 kcal Electronic energy + Delta-G solvation = -23804.012373 eV Core-core repulsion = 20196.660630 eV Total energy + Delta-G solvation = -3607.351742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.49246 -41.10135 -39.50814 -37.24654 -36.81682 -34.51915 -33.83262 -33.43648 -32.01757 -29.29671 -27.14158 -26.17509 -24.43750 -23.13320 -22.03077 -21.63511 -20.91436 -19.29605 -18.87035 -18.17886 -17.54019 -17.19058 -16.89758 -16.73697 -16.18943 -15.99215 -15.53773 -15.27052 -14.82609 -14.44092 -14.33527 -14.24872 -14.10098 -13.88128 -13.62808 -13.05241 -13.00749 -12.84759 -12.65535 -12.58072 -12.52515 -12.30987 -12.05913 -11.94835 -11.82948 -11.69036 -11.66190 -11.49052 -11.07367 -10.50536 -10.31028 -9.59486 -8.29094 -6.10081 1.17221 1.42573 1.51027 1.61045 1.86298 2.02786 2.34799 2.76437 3.04351 3.08734 3.64595 3.81528 3.99086 4.03575 4.13312 4.19820 4.23890 4.29482 4.44179 4.48182 4.57090 4.63777 4.73587 4.82613 4.87253 4.90564 4.97714 5.07205 5.08927 5.16586 5.30017 5.35972 5.39853 5.49146 5.58352 5.91205 6.07413 6.37725 6.98431 7.09848 7.51850 7.94372 8.69834 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.006301 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.245846 B = 4442.854677 C = 5430.786469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.119 4.119 3 C 0.104 3.896 4 H 0.061 0.939 5 O -0.390 6.390 6 C 0.054 3.946 7 C -0.133 4.133 8 C -0.124 4.124 9 H 0.104 0.896 10 C 0.474 3.526 11 O -0.630 6.630 12 N -0.443 5.443 13 C -0.350 4.350 14 H 0.108 0.892 15 C 0.004 3.996 16 N -0.887 5.887 17 Si 0.978 3.022 18 H -0.272 1.272 19 H -0.291 1.291 20 H -0.251 1.251 21 C 0.124 3.876 22 C -0.115 4.115 23 C 0.494 3.506 24 O -0.550 6.550 25 O -0.507 6.507 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.271 0.729 36 H 0.033 0.967 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.626 6.882 -4.438 8.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.157 4.157 3 C 0.047 3.953 4 H 0.079 0.921 5 O -0.310 6.310 6 C -0.022 4.022 7 C -0.171 4.171 8 C -0.146 4.146 9 H 0.123 0.877 10 C 0.265 3.735 11 O -0.518 6.518 12 N -0.160 5.160 13 C -0.477 4.477 14 H 0.126 0.874 15 C -0.200 4.200 16 N -0.524 5.524 17 Si 0.801 3.199 18 H -0.198 1.198 19 H -0.217 1.217 20 H -0.175 1.175 21 C 0.000 4.000 22 C -0.154 4.154 23 C 0.338 3.662 24 O -0.440 6.440 25 O -0.321 6.321 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.119 0.881 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -0.032 6.666 -4.339 7.954 hybrid contribution 1.083 -0.621 0.913 1.547 sum 1.051 6.044 -3.426 7.027 Atomic orbital electron populations 1.21651 0.93787 1.02221 1.01963 1.21596 0.97946 0.94276 1.01873 1.22711 0.92311 0.94237 0.86079 0.92129 1.88318 1.43687 1.60976 1.38004 1.23260 0.86373 0.94811 0.97778 1.22997 1.01458 0.94689 0.97978 1.22731 0.96802 1.01015 0.94012 0.87743 1.20594 0.80496 0.81788 0.90668 1.90508 1.55614 1.52461 1.53218 1.43643 1.16491 1.50451 1.05397 1.19822 1.21871 1.07642 0.98389 0.87448 1.26211 1.01965 0.93378 0.98452 1.70052 1.36869 1.11635 1.33832 0.85153 0.78205 0.77013 0.79509 1.19799 1.21695 1.17478 1.21062 0.98264 0.98066 0.82643 1.21592 1.03366 1.01833 0.88564 1.23400 0.73246 0.79168 0.90426 1.90701 1.53200 1.32926 1.67212 1.84506 1.67257 1.47136 1.33157 0.91443 0.93339 0.91683 0.90808 0.93057 0.89254 0.89733 0.91277 0.88004 0.91906 0.94800 0.88136 0.86439 0.88067 0.71174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.85 71.98 0.71 -3.30 16 2 C -0.12 -4.13 5.67 30.59 0.17 -3.96 16 3 C 0.10 3.83 2.80 31.26 0.09 3.91 16 4 H 0.06 2.49 7.24 -2.39 -0.02 2.47 16 5 O -0.39 -12.78 10.81 -148.98 -1.61 -14.39 16 6 C 0.05 1.42 7.79 72.45 0.56 1.98 16 7 C -0.13 -4.06 6.49 31.85 0.21 -3.85 16 8 C -0.12 -4.77 2.09 -10.08 -0.02 -4.79 16 9 H 0.10 4.13 6.73 -2.39 -0.02 4.12 16 10 C 0.47 22.07 6.75 87.66 0.59 22.66 16 11 O -0.63 -32.45 15.59 -3.07 -0.05 -32.50 16 12 N -0.44 -21.17 2.54 -635.53 -1.62 -22.78 16 13 C -0.35 -16.21 8.19 84.04 0.69 -15.52 16 14 H 0.11 4.57 7.18 -2.92 -0.02 4.55 16 15 C 0.00 0.17 5.00 84.93 0.42 0.59 16 16 N -0.89 -45.95 11.23 21.66 0.24 -45.71 16 17 Si 0.98 36.88 29.61 68.60 2.03 38.91 16 18 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 19 H -0.29 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 21 C 0.12 5.96 4.26 86.38 0.37 6.33 16 22 C -0.11 -4.44 6.14 29.85 0.18 -4.25 16 23 C 0.49 17.73 8.33 71.24 0.59 18.32 16 24 O -0.55 -23.58 16.74 21.99 0.37 -23.21 16 25 O -0.51 -13.24 13.42 -51.47 -0.69 -13.93 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.06 1.77 7.99 -2.39 -0.02 1.75 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 2.20 8.03 -2.39 -0.02 2.19 16 34 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 36 H 0.03 1.78 7.45 -2.39 -0.02 1.77 16 37 H 0.10 5.29 5.25 -2.38 -0.01 5.28 16 38 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 39 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 40 H 0.43 6.82 9.10 -74.06 -0.67 6.14 16 Total: -1.00 -64.26 335.17 3.62 -60.64 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: 0.38 Total: 34.84 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 4.57 Total: 18.14 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -1.37 Total: -68.49 kcal Atomic # 8 Polarization: -82.05 SS G_CDS: -1.98 Total: -84.03 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.03 Total: 38.91 kcal Total: -64.26 3.62 -60.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597303678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.788 kcal (2) G-P(sol) polarization free energy of solvation -64.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds