Wall clock time and date at job start Tue Mar 31 2020 06:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 119.99991 * 2 1 4 4 C 1.50700 * 109.47012 * 269.99769 * 3 2 1 5 5 H 1.07997 * 120.00265 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99505 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00287 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99677 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47023 * 89.99902 * 8 6 4 10 10 H 1.48497 * 109.47214 * 210.00212 * 8 6 4 11 11 H 1.48497 * 109.46945 * 330.00127 * 8 6 4 12 12 C 1.34780 * 119.99976 * 180.02562 * 2 1 3 13 13 O 1.21278 * 120.00212 * 179.97438 * 12 2 1 14 14 C 1.50706 * 119.99815 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.46984 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47034 * 179.97438 * 15 14 12 17 17 H 1.08998 * 110.35321 * 304.31105 * 16 15 14 18 18 C 1.54947 * 110.31103 * 182.16975 * 16 15 14 19 19 C 1.55305 * 100.94425 * 204.64204 * 18 16 15 20 20 H 1.08998 * 110.84418 * 275.94481 * 19 18 16 21 21 C 1.50700 * 110.84853 * 152.31831 * 19 18 16 22 22 O 1.20825 * 119.99813 * 5.71722 * 21 19 18 23 23 O 1.34229 * 119.99879 * 185.71236 * 21 19 18 24 24 C 1.54387 * 102.24962 * 34.12994 * 19 18 16 25 25 O 1.43236 * 107.59079 * 338.64624 * 24 19 18 26 26 H 1.09003 * 109.46830 * 269.99844 * 1 2 3 27 27 H 1.09001 * 109.46984 * 29.99703 * 1 2 3 28 28 H 1.08999 * 109.47045 * 150.00023 * 1 2 3 29 29 H 1.08994 * 109.47338 * 30.00463 * 3 2 1 30 30 H 1.09004 * 109.47151 * 150.00355 * 3 2 1 31 31 H 0.97002 * 119.99832 * 180.02562 * 7 6 4 32 32 H 1.08993 * 109.47327 * 60.00119 * 14 12 2 33 33 H 1.08999 * 109.47023 * 300.00236 * 14 12 2 34 34 H 1.09003 * 109.46858 * 60.00473 * 15 14 12 35 35 H 1.09000 * 109.47239 * 300.00504 * 15 14 12 36 36 H 1.09002 * 111.12827 * 86.71869 * 18 16 15 37 37 H 1.09008 * 111.12113 * 322.55837 * 18 16 15 38 38 H 0.96697 * 116.99575 * 180.02562 * 23 21 19 39 39 H 1.09001 * 109.82619 * 98.16119 * 24 19 18 40 40 H 1.09002 * 109.82943 * 219.12673 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5533 3.6180 -0.6731 8 14 3.4368 3.4175 -3.4339 9 1 2.3064 4.2601 -3.9002 10 1 4.6969 4.2008 -3.4966 11 1 3.5542 2.2206 -4.3049 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4724 -0.0005 15 6 2.3796 -3.6353 -0.0018 16 6 1.6146 -4.9603 -0.0012 17 1 0.9271 -5.0007 0.8437 18 6 2.6032 -6.1521 0.0526 19 6 1.7452 -7.2761 -0.5897 20 1 1.0969 -7.7414 0.1528 21 6 2.6213 -8.3037 -1.2586 22 8 3.8229 -8.2339 -1.1531 23 8 2.0667 -9.2966 -1.9716 24 6 0.9151 -6.4985 -1.6337 25 8 0.8979 -5.1228 -1.2354 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1384 0.5138 31 1 4.0295 4.4443 -0.8504 32 1 0.7584 -2.5299 -0.8902 33 1 0.7590 -2.5302 0.8897 34 1 3.0069 -3.5780 0.8878 35 1 3.0056 -3.5771 -0.8922 36 1 2.8665 -6.3981 1.0813 37 1 3.4945 -5.9502 -0.5416 38 1 2.6693 -9.9320 -2.3818 39 1 1.3757 -6.5931 -2.6171 40 1 -0.1025 -6.8882 -1.6617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598469093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:01 Heat of formation + Delta-G solvation = -181.477760 kcal Electronic energy + Delta-G solvation = -22405.413001 eV Core-core repulsion = 18799.013090 eV Total energy + Delta-G solvation = -3606.399911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.05533 -39.46684 -38.73101 -36.57320 -34.79770 -33.48953 -32.78485 -32.50109 -29.29518 -27.58317 -25.76611 -24.64734 -24.37498 -22.35184 -21.21017 -20.72859 -18.43355 -18.23673 -17.66042 -17.03260 -16.50054 -16.07101 -15.74204 -15.65239 -15.17539 -14.86890 -14.55756 -14.21192 -13.67492 -13.49607 -13.22773 -12.82091 -12.46066 -12.14672 -12.10661 -11.99044 -11.90466 -11.75240 -11.65398 -11.34883 -11.22141 -11.01267 -10.96709 -10.83015 -10.68348 -10.49573 -10.11301 -9.73641 -9.57538 -8.79999 -8.39672 -7.56816 -6.00257 -4.04719 1.72520 2.49755 3.33073 3.39450 3.43911 3.50596 3.55251 3.79922 4.04299 4.43165 4.46423 4.49221 4.65603 4.86868 4.88789 5.10032 5.28026 5.31359 5.33926 5.40243 5.42996 5.55665 5.62611 5.71579 5.82114 5.94396 5.99334 6.04311 6.22743 6.29890 6.42055 6.76474 7.11971 7.42502 7.49612 7.61260 7.96756 8.28668 8.50357 8.95607 9.18338 9.60393 11.07829 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025619 B = 0.003023 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.664728 B = 9260.250291 C = 9630.065488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.605 5.605 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.502 3.498 13 O -0.546 6.546 14 C -0.136 4.136 15 C -0.102 4.102 16 C 0.082 3.918 17 H 0.078 0.922 18 C -0.136 4.136 19 C -0.122 4.122 20 H 0.125 0.875 21 C 0.490 3.510 22 O -0.505 6.505 23 O -0.515 6.515 24 C 0.068 3.932 25 O -0.369 6.369 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.412 0.588 39 H 0.073 0.927 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.125 -23.846 1.696 25.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.337 5.337 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.289 3.711 13 O -0.424 6.424 14 C -0.176 4.176 15 C -0.139 4.139 16 C 0.025 3.975 17 H 0.096 0.904 18 C -0.174 4.174 19 C -0.141 4.141 20 H 0.142 0.858 21 C 0.331 3.669 22 O -0.392 6.392 23 O -0.328 6.328 24 C -0.009 4.009 25 O -0.288 6.288 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.272 0.728 39 H 0.091 0.909 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.415 -23.171 1.841 24.720 hybrid contribution 0.549 -0.264 -1.147 1.299 sum -7.867 -23.435 0.694 24.730 Atomic orbital electron populations 1.21629 0.81504 1.02608 1.00279 1.48170 1.06159 1.07937 1.71457 1.19271 0.92555 0.78272 0.97431 1.21456 1.36329 1.06179 0.92386 0.92477 1.24944 0.95392 0.96429 0.97430 1.69935 1.38568 1.14317 1.30717 0.86495 0.77637 0.78578 0.84712 1.20659 1.21101 1.19874 1.20416 0.88132 0.85268 0.77291 1.90656 1.14037 1.87369 1.50313 1.21630 0.99175 0.93005 1.03777 1.21483 0.97313 0.90540 1.04609 1.23150 0.92130 0.95203 0.87049 0.90413 1.23358 0.99208 0.91891 1.02932 1.22651 0.97906 0.94226 0.99296 0.85757 1.23022 0.87669 0.80498 0.75681 1.90766 1.16474 1.73681 1.58300 1.84528 1.45911 1.39043 1.63271 1.22975 0.99616 0.81791 0.96510 1.88512 1.75614 1.24082 1.40617 0.93882 0.90935 0.92277 0.95111 0.93892 0.92763 0.88870 0.89862 0.89707 0.90188 0.88744 0.88431 0.72845 0.90918 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.24 59.85 0.61 1.98 16 2 N -0.61 -13.21 2.86 -182.95 -0.52 -13.73 16 3 C 0.24 6.57 5.16 -5.20 -0.03 6.54 16 4 C -0.52 -15.29 9.39 -34.44 -0.32 -15.62 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 8 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.50 10.64 7.67 -10.98 -0.08 10.56 16 13 O -0.55 -13.98 15.56 5.56 0.09 -13.89 16 14 C -0.14 -2.02 4.17 -27.88 -0.12 -2.14 16 15 C -0.10 -1.39 4.25 -26.73 -0.11 -1.50 16 16 C 0.08 0.84 3.43 -25.70 -0.09 0.75 16 17 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 18 C -0.14 -1.25 5.65 -24.48 -0.14 -1.39 16 19 C -0.12 -0.91 3.50 -89.82 -0.31 -1.23 16 20 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 21 C 0.49 4.22 7.50 36.01 0.27 4.49 16 22 O -0.51 -6.13 16.52 -18.75 -0.31 -6.44 16 23 O -0.52 -3.07 13.41 -39.26 -0.53 -3.60 16 24 C 0.07 0.57 7.38 37.88 0.28 0.85 16 25 O -0.37 -4.22 10.69 -35.23 -0.38 -4.59 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 28 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 29 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.09 1.34 7.16 -51.93 -0.37 0.97 16 33 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 34 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 35 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.10 7.38 -51.92 -0.38 0.71 16 38 H 0.41 0.85 9.10 45.56 0.41 1.26 16 39 H 0.07 0.63 7.81 -51.93 -0.41 0.22 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 339.57 15.07 5.12 5.12 Total: -1.00 -37.14 339.57 -6.18 -43.32 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.22 Total: -2.01 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -0.14 Total: 4.96 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.21 Total: -40.16 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -1.13 Total: -28.53 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.14 -6.18 -43.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598469093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.157 kcal (2) G-P(sol) polarization free energy of solvation -37.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds