Wall clock time and date at job start Tue Mar 31 2020 06:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 119.99991 * 2 1 4 4 C 1.50700 * 109.47012 * 269.99769 * 3 2 1 5 5 H 1.07997 * 120.00265 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99505 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00287 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99677 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47023 * 89.99902 * 8 6 4 10 10 H 1.48497 * 109.47214 * 210.00212 * 8 6 4 11 11 H 1.48497 * 109.46945 * 330.00127 * 8 6 4 12 12 C 1.34780 * 119.99976 * 180.02562 * 2 1 3 13 13 O 1.21278 * 120.00212 * 179.97438 * 12 2 1 14 14 C 1.50706 * 119.99815 * 359.97438 * 12 2 1 15 15 C 1.53001 * 109.46984 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47034 * 179.97438 * 15 14 12 17 17 H 1.08998 * 110.35321 * 304.31105 * 16 15 14 18 18 C 1.54947 * 110.31103 * 182.16975 * 16 15 14 19 19 C 1.55305 * 100.94425 * 204.64204 * 18 16 15 20 20 H 1.08998 * 110.84418 * 275.94481 * 19 18 16 21 21 C 1.50700 * 110.84853 * 152.31831 * 19 18 16 22 22 O 1.20825 * 119.99813 * 5.71722 * 21 19 18 23 23 O 1.34229 * 119.99879 * 185.71236 * 21 19 18 24 24 C 1.54387 * 102.24962 * 34.12994 * 19 18 16 25 25 O 1.43236 * 107.59079 * 338.64624 * 24 19 18 26 26 H 1.09003 * 109.46830 * 269.99844 * 1 2 3 27 27 H 1.09001 * 109.46984 * 29.99703 * 1 2 3 28 28 H 1.08999 * 109.47045 * 150.00023 * 1 2 3 29 29 H 1.08994 * 109.47338 * 30.00463 * 3 2 1 30 30 H 1.09004 * 109.47151 * 150.00355 * 3 2 1 31 31 H 0.97002 * 119.99832 * 180.02562 * 7 6 4 32 32 H 1.08993 * 109.47327 * 60.00119 * 14 12 2 33 33 H 1.08999 * 109.47023 * 300.00236 * 14 12 2 34 34 H 1.09003 * 109.46858 * 60.00473 * 15 14 12 35 35 H 1.09000 * 109.47239 * 300.00504 * 15 14 12 36 36 H 1.09002 * 111.12827 * 86.71869 * 18 16 15 37 37 H 1.09008 * 111.12113 * 322.55837 * 18 16 15 38 38 H 0.96697 * 116.99575 * 180.02562 * 23 21 19 39 39 H 1.09001 * 109.82619 * 98.16119 * 24 19 18 40 40 H 1.09002 * 109.82943 * 219.12673 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5533 3.6180 -0.6731 8 14 3.4368 3.4175 -3.4339 9 1 2.3064 4.2601 -3.9002 10 1 4.6969 4.2008 -3.4966 11 1 3.5542 2.2206 -4.3049 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4724 -0.0005 15 6 2.3796 -3.6353 -0.0018 16 6 1.6146 -4.9603 -0.0012 17 1 0.9271 -5.0007 0.8437 18 6 2.6032 -6.1521 0.0526 19 6 1.7452 -7.2761 -0.5897 20 1 1.0969 -7.7414 0.1528 21 6 2.6213 -8.3037 -1.2586 22 8 3.8229 -8.2339 -1.1531 23 8 2.0667 -9.2966 -1.9716 24 6 0.9151 -6.4985 -1.6337 25 8 0.8979 -5.1228 -1.2354 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1384 0.5138 31 1 4.0295 4.4443 -0.8504 32 1 0.7584 -2.5299 -0.8902 33 1 0.7590 -2.5302 0.8897 34 1 3.0069 -3.5780 0.8878 35 1 3.0056 -3.5771 -0.8922 36 1 2.8665 -6.3981 1.0813 37 1 3.4945 -5.9502 -0.5416 38 1 2.6693 -9.9320 -2.3818 39 1 1.3757 -6.5931 -2.6171 40 1 -0.1025 -6.8882 -1.6617 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598469093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:00 Heat of formation + Delta-G solvation = -209.445486 kcal Electronic energy + Delta-G solvation = -22406.625772 eV Core-core repulsion = 18799.013090 eV Total energy + Delta-G solvation = -3607.612683 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.73253 -40.68471 -39.92548 -37.19116 -36.60488 -34.87180 -34.41944 -33.48251 -30.60416 -29.22395 -27.27999 -25.87106 -25.27948 -24.00910 -22.03778 -21.48331 -19.84991 -19.06055 -18.71034 -18.34398 -17.98511 -17.37177 -17.05983 -16.69992 -16.38024 -16.18051 -16.01721 -15.36641 -14.75723 -14.42019 -14.30066 -14.25325 -13.95079 -13.55324 -13.43179 -13.18534 -13.15572 -12.94408 -12.71934 -12.67496 -12.51721 -12.48840 -12.21548 -12.11472 -11.93450 -11.84577 -11.70074 -11.62840 -10.65248 -10.54834 -10.47019 -9.39119 -8.23432 -6.38624 1.08388 1.34854 1.38303 1.48774 1.88954 1.96502 2.33717 2.50058 2.80527 3.05499 3.15869 3.67816 3.81791 3.87315 3.96907 4.13341 4.28883 4.35031 4.37730 4.48007 4.59924 4.72952 4.75520 4.77160 4.80752 4.85939 4.98818 5.00720 5.08509 5.16468 5.23693 5.33340 5.54334 5.56469 5.85929 6.02713 6.06139 6.69351 6.82946 6.90950 7.27780 7.52735 8.83520 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025619 B = 0.003023 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.664728 B = 9260.250291 C = 9630.065488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.614 5.614 3 C 0.257 3.743 4 C -0.544 4.544 5 H 0.051 0.949 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.489 3.511 13 O -0.604 6.604 14 C -0.117 4.117 15 C -0.101 4.101 16 C 0.091 3.909 17 H 0.113 0.887 18 C -0.139 4.139 19 C -0.113 4.113 20 H 0.161 0.839 21 C 0.494 3.506 22 O -0.549 6.549 23 O -0.506 6.506 24 C 0.065 3.935 25 O -0.392 6.392 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.024 0.976 30 H -0.004 1.004 31 H 0.268 0.732 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.112 0.888 37 H 0.066 0.934 38 H 0.429 0.571 39 H 0.062 0.938 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.792 -25.626 1.331 28.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.345 5.345 3 C 0.135 3.865 4 C -0.583 4.583 5 H 0.069 0.931 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.186 1.186 10 H -0.205 1.205 11 H -0.200 1.200 12 C 0.279 3.721 13 O -0.486 6.486 14 C -0.157 4.157 15 C -0.139 4.139 16 C 0.034 3.966 17 H 0.130 0.870 18 C -0.177 4.177 19 C -0.132 4.132 20 H 0.178 0.822 21 C 0.338 3.662 22 O -0.440 6.440 23 O -0.320 6.320 24 C -0.011 4.011 25 O -0.312 6.312 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.042 0.958 30 H 0.014 0.986 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.142 0.858 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.130 0.870 37 H 0.085 0.915 38 H 0.291 0.709 39 H 0.080 0.920 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.153 -24.987 1.465 27.402 hybrid contribution 1.376 0.250 -1.033 1.738 sum -9.778 -24.737 0.432 26.603 Atomic orbital electron populations 1.21939 0.77765 1.03939 1.02693 1.48240 1.08518 1.06447 1.71309 1.18744 0.91113 0.80697 0.95910 1.21719 1.36896 1.06555 0.93111 0.93094 1.25886 0.94852 0.96415 1.02122 1.70050 1.38986 1.14778 1.33061 0.85398 0.78196 0.78166 0.78943 1.18557 1.20491 1.19965 1.21638 0.87908 0.86978 0.75604 1.90622 1.16918 1.88326 1.52727 1.21617 0.98935 0.88983 1.06143 1.21448 0.97211 0.92527 1.02747 1.23103 0.92506 0.93081 0.87895 0.86970 1.23311 0.98192 0.92517 1.03662 1.22687 0.97458 0.93445 0.99599 0.82155 1.23247 0.87085 0.80746 0.75128 1.90762 1.18357 1.74849 1.60020 1.84489 1.46118 1.38784 1.62613 1.23124 1.01205 0.80672 0.96143 1.88472 1.75534 1.25984 1.41187 0.90826 0.91866 0.88714 0.95816 0.98575 0.92350 0.87571 0.85773 0.90257 0.93717 0.86972 0.91547 0.70862 0.91987 0.87174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.38 10.24 127.77 1.31 3.69 16 2 N -0.61 -26.95 2.86 -851.12 -2.43 -29.38 16 3 C 0.26 14.41 5.16 85.63 0.44 14.85 16 4 C -0.54 -32.59 9.39 25.60 0.24 -32.35 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.36 5.46 84.66 0.46 0.82 16 7 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 8 Si 0.97 46.20 29.54 68.60 2.03 48.23 16 9 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 12 C 0.49 20.96 7.67 87.66 0.67 21.64 16 13 O -0.60 -32.56 15.56 -3.02 -0.05 -32.61 16 14 C -0.12 -3.26 4.17 29.85 0.12 -3.14 16 15 C -0.10 -2.72 4.25 30.59 0.13 -2.59 16 16 C 0.09 1.64 3.43 31.26 0.11 1.75 16 17 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 18 C -0.14 -2.35 5.65 32.05 0.18 -2.17 16 19 C -0.11 -1.39 3.50 -10.28 -0.04 -1.42 16 20 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 21 C 0.49 7.76 7.50 71.24 0.53 8.29 16 22 O -0.55 -13.28 16.52 21.97 0.36 -12.91 16 23 O -0.51 -4.87 13.41 -51.41 -0.69 -5.56 16 24 C 0.07 0.92 7.38 72.45 0.53 1.45 16 25 O -0.39 -7.97 10.69 -148.98 -1.59 -9.56 16 26 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 28 H 0.09 2.19 6.44 -2.39 -0.02 2.18 16 29 H 0.02 1.34 8.07 -2.39 -0.02 1.32 16 30 H 0.00 -0.25 7.42 -2.38 -0.02 -0.27 16 31 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 32 H 0.11 2.74 7.16 -2.39 -0.02 2.73 16 33 H 0.12 2.48 8.11 -2.39 -0.02 2.46 16 34 H 0.08 2.18 8.10 -2.39 -0.02 2.16 16 35 H 0.04 1.49 8.10 -2.39 -0.02 1.47 16 36 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.55 7.38 -2.38 -0.02 1.53 16 38 H 0.43 0.94 9.10 -74.06 -0.67 0.26 16 39 H 0.06 0.98 7.81 -2.39 -0.02 0.97 16 40 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -85.90 339.57 2.99 -82.91 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 0.37 Total: 5.41 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 4.70 Total: 10.82 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -2.15 Total: -86.72 kcal Atomic # 8 Polarization: -58.68 SS G_CDS: -1.97 Total: -60.65 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -85.90 2.99 -82.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598469093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.534 kcal (2) G-P(sol) polarization free energy of solvation -85.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds