Wall clock time and date at job start Tue Mar 31 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46507 * 119.99820 * 2 1 4 4 C 1.50697 * 109.47006 * 89.99849 * 3 2 1 5 5 H 1.07991 * 120.00449 * 359.72165 * 4 3 2 6 6 C 1.37885 * 119.99686 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 3 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 C 1.34769 * 120.00320 * 179.97438 * 2 1 3 13 13 O 1.21284 * 120.00610 * 180.02562 * 12 2 1 14 14 C 1.50708 * 119.99889 * 0.02562 * 12 2 1 15 15 H 1.09006 * 109.86427 * 304.29277 * 14 12 2 16 16 C 1.54095 * 109.87827 * 65.29947 * 14 12 2 17 17 C 1.54823 * 104.18444 * 121.45778 * 16 14 12 18 18 C 1.55000 * 102.09156 * 20.88036 * 17 16 14 19 19 H 1.08997 * 110.61567 * 81.63666 * 18 17 16 20 20 C 1.52999 * 110.61533 * 204.47835 * 18 17 16 21 21 C 1.52997 * 109.46813 * 185.00313 * 20 18 17 22 22 C 1.50704 * 109.47144 * 179.97438 * 21 20 18 23 23 O 1.20829 * 119.99374 * 359.97438 * 22 21 20 24 24 O 1.34220 * 120.00138 * 179.97438 * 22 21 20 25 25 O 1.43742 * 109.87932 * 183.29011 * 14 12 2 26 26 H 1.09002 * 109.46279 * 90.00094 * 1 2 3 27 27 H 1.08997 * 109.47129 * 210.00155 * 1 2 3 28 28 H 1.08996 * 109.46796 * 330.00459 * 1 2 3 29 29 H 1.08998 * 109.47049 * 329.99278 * 3 2 1 30 30 H 1.09001 * 109.46896 * 209.99549 * 3 2 1 31 31 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 32 32 H 1.08997 * 110.48915 * 240.13153 * 16 14 12 33 33 H 1.09000 * 110.48963 * 2.65150 * 16 14 12 34 34 H 1.08992 * 110.90539 * 139.07943 * 17 16 14 35 35 H 1.08997 * 110.90449 * 262.67919 * 17 16 14 36 36 H 1.09002 * 109.46647 * 304.99668 * 20 18 17 37 37 H 1.08995 * 109.47458 * 64.99992 * 20 18 17 38 38 H 1.09002 * 109.46987 * 299.99146 * 21 20 18 39 39 H 1.08995 * 109.47371 * 59.99625 * 21 20 18 40 40 H 0.96700 * 117.00211 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0939 1.0984 2.2417 6 6 3.1269 2.8776 1.6727 7 7 3.5594 3.6147 0.6730 8 14 3.4314 3.4208 3.4338 9 1 2.8482 2.4239 4.3672 10 1 4.8930 3.5277 3.6731 11 1 2.7946 4.7429 3.6611 12 6 2.1389 -1.1671 0.0005 13 8 3.3518 -1.1672 0.0010 14 6 1.3855 -2.4723 0.0005 15 1 0.6997 -2.5041 0.8473 16 6 0.5996 -2.6236 -1.3163 17 6 1.1417 -3.9361 -1.9330 18 6 1.7438 -4.6513 -0.6967 19 1 0.9644 -5.1624 -0.1316 20 6 2.8332 -5.6377 -1.1224 21 6 3.3214 -6.4172 0.1002 22 6 4.3940 -7.3892 -0.3191 23 8 4.7327 -7.4522 -1.4772 24 8 4.9729 -8.1848 0.5938 25 8 2.3098 -3.5703 0.0787 26 1 -0.3632 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6085 2.0284 -0.5139 30 1 3.1500 1.1384 -0.5138 31 1 4.0369 4.4402 0.8503 32 1 -0.4684 -2.7090 -1.1156 33 1 0.7963 -1.7794 -1.9772 34 1 0.3336 -4.5245 -2.3675 35 1 1.9121 -3.7279 -2.6754 36 1 2.4271 -6.3323 -1.8578 37 1 3.6674 -5.0905 -1.5613 38 1 3.7275 -5.7226 0.8356 39 1 2.4871 -6.9644 0.5392 40 1 5.6561 -8.7915 0.2773 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598469205.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:03 Heat of formation + Delta-G solvation = -207.066262 kcal Electronic energy + Delta-G solvation = -22773.213345 eV Core-core repulsion = 19165.703833 eV Total energy + Delta-G solvation = -3607.509512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.47237 -41.13577 -39.47585 -37.17702 -36.62143 -34.93420 -34.60980 -33.04900 -30.85612 -29.27661 -27.44026 -26.50902 -24.68931 -23.15696 -22.28720 -21.55271 -20.24391 -19.07436 -18.74330 -18.08743 -17.75841 -17.51615 -17.17235 -16.90873 -16.54697 -16.25808 -15.36833 -15.13934 -14.70299 -14.42742 -14.28483 -14.25013 -14.13082 -13.72902 -13.47859 -13.15197 -12.94275 -12.83501 -12.63886 -12.57541 -12.55027 -12.51801 -12.22299 -12.02201 -11.94767 -11.76643 -11.68318 -11.56147 -10.97081 -10.66596 -10.26638 -9.43984 -8.24100 -6.39266 1.21079 1.35389 1.38451 1.50207 1.76971 2.13468 2.16591 2.38397 2.99692 3.05457 3.49825 3.63768 3.79512 3.88646 4.03983 4.11650 4.25476 4.33294 4.45145 4.55080 4.58654 4.69849 4.74357 4.77522 4.89438 4.96177 4.98476 5.02222 5.07219 5.14587 5.20517 5.26905 5.54213 5.62672 5.80005 5.96017 6.04302 6.68686 6.76425 6.99419 7.26627 7.46841 8.83290 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020565 B = 0.003559 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.178455 B = 7865.775754 C = 8726.936807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.606 5.606 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.054 0.946 6 C 0.005 3.995 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.488 3.512 13 O -0.594 6.594 14 C 0.071 3.929 15 H 0.119 0.881 16 C -0.138 4.138 17 C -0.145 4.145 18 C 0.069 3.931 19 H 0.114 0.886 20 C -0.099 4.099 21 C -0.112 4.112 22 C 0.483 3.517 23 O -0.556 6.556 24 O -0.515 6.515 25 O -0.381 6.381 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.028 0.972 30 H -0.008 1.008 31 H 0.267 0.733 32 H 0.131 0.869 33 H 0.065 0.935 34 H 0.124 0.876 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.047 0.953 38 H 0.103 0.897 39 H 0.142 0.858 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.444 -21.969 -2.018 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.338 5.338 3 C 0.138 3.862 4 C -0.583 4.583 5 H 0.072 0.928 6 C -0.194 4.194 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.209 1.209 11 H -0.191 1.191 12 C 0.277 3.723 13 O -0.474 6.474 14 C 0.010 3.990 15 H 0.136 0.864 16 C -0.176 4.176 17 C -0.182 4.182 18 C 0.012 3.988 19 H 0.132 0.868 20 C -0.137 4.137 21 C -0.149 4.149 22 C 0.328 3.672 23 O -0.448 6.448 24 O -0.328 6.328 25 O -0.300 6.300 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.010 0.990 31 H 0.076 0.924 32 H 0.149 0.851 33 H 0.084 0.916 34 H 0.142 0.858 35 H 0.077 0.923 36 H 0.123 0.877 37 H 0.066 0.934 38 H 0.121 0.879 39 H 0.159 0.841 40 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -10.756 -21.553 -2.120 24.181 hybrid contribution 1.345 0.596 0.325 1.506 sum -9.411 -20.956 -1.795 23.043 Atomic orbital electron populations 1.22071 0.77467 1.04221 1.02943 1.48117 1.08607 1.05853 1.71240 1.18760 0.91021 0.80363 0.96079 1.21750 1.36840 1.06633 0.93052 0.92800 1.25907 0.94821 0.96432 1.02194 1.70064 1.38797 1.14967 1.33068 0.85325 0.77836 0.78490 0.78900 1.19009 1.20901 1.19118 1.21444 0.87907 0.86700 0.76297 1.90642 1.17027 1.88025 1.51746 1.22704 0.90281 0.84135 1.01926 0.86363 1.23017 1.02085 0.98981 0.93492 1.23194 1.01798 0.95680 0.97525 1.23562 0.95491 0.88015 0.91714 0.86806 1.21442 0.98254 0.96992 0.97013 1.21434 0.96771 0.96071 1.00597 1.23876 0.81373 0.79123 0.82830 1.90716 1.63526 1.68556 1.21976 1.84517 1.54069 1.50849 1.43408 1.89050 1.45585 1.23031 1.72360 0.90546 0.88533 0.91418 0.95413 0.98955 0.92368 0.85087 0.91580 0.85785 0.92326 0.87734 0.93426 0.87882 0.84067 0.71257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.10 9.21 127.77 1.18 3.27 16 2 N -0.61 -26.04 2.86 -851.11 -2.43 -28.48 16 3 C 0.26 14.37 5.16 85.63 0.44 14.81 16 4 C -0.54 -32.17 9.39 25.60 0.24 -31.93 16 5 H 0.05 3.15 7.81 -2.92 -0.02 3.12 16 6 C 0.01 0.31 5.46 84.66 0.46 0.77 16 7 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 8 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 12 C 0.49 21.50 6.86 87.66 0.60 22.10 16 13 O -0.59 -33.95 16.11 15.67 0.25 -33.70 16 14 C 0.07 2.04 2.97 30.22 0.09 2.13 16 15 H 0.12 2.70 7.18 -2.38 -0.02 2.68 16 16 C -0.14 -2.68 5.24 31.59 0.17 -2.51 16 17 C -0.14 -2.46 6.59 31.90 0.21 -2.25 16 18 C 0.07 1.30 3.29 31.28 0.10 1.40 16 19 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 20 C -0.10 -1.95 4.26 30.59 0.13 -1.82 16 21 C -0.11 -1.90 5.76 29.85 0.17 -1.73 16 22 C 0.48 9.71 8.33 71.24 0.59 10.30 16 23 O -0.56 -15.07 16.74 21.95 0.37 -14.70 16 24 O -0.51 -7.74 13.42 -51.32 -0.69 -8.43 16 25 O -0.38 -11.88 10.31 -130.27 -1.34 -13.22 16 26 H 0.08 1.70 7.86 -2.39 -0.02 1.68 16 27 H 0.10 1.93 6.19 -2.39 -0.01 1.91 16 28 H 0.07 2.02 8.07 -2.39 -0.02 2.00 16 29 H 0.03 1.54 8.07 -2.39 -0.02 1.52 16 30 H -0.01 -0.50 7.42 -2.39 -0.02 -0.52 16 31 H 0.27 15.38 8.31 -92.71 -0.77 14.60 16 32 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.56 7.33 -2.39 -0.02 1.54 16 34 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.27 8.06 -2.39 -0.02 1.25 16 36 H 0.10 1.62 8.10 -2.39 -0.02 1.60 16 37 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 38 H 0.10 2.09 8.06 -2.39 -0.02 2.07 16 39 H 0.14 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.43 2.92 9.10 -74.06 -0.67 2.24 16 Total: -1.00 -89.48 338.33 3.23 -86.25 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 0.37 Total: 7.03 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 4.39 Total: 14.55 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -2.15 Total: -85.51 kcal Atomic # 8 Polarization: -68.65 SS G_CDS: -1.41 Total: -70.06 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -89.48 3.23 -86.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598469205.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.812 kcal (2) G-P(sol) polarization free energy of solvation -89.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds