Wall clock time and date at job start Tue Mar 31 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 117.00198 * 2 1 4 4 O 1.20826 * 119.99513 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00483 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.45171 * 328.86902 * 5 3 2 7 7 C 1.53031 * 109.46186 * 88.84007 * 5 3 2 8 8 C 1.53122 * 109.27973 * 179.19428 * 7 5 3 9 9 H 1.09004 * 109.52203 * 182.43830 * 8 7 5 10 10 C 1.50703 * 109.52098 * 62.25069 * 8 7 5 11 11 O 1.20829 * 119.99878 * 359.97438 * 10 8 7 12 12 O 1.34230 * 120.00114 * 180.02562 * 10 8 7 13 13 C 1.53114 * 109.16114 * 302.34706 * 8 7 5 14 14 C 1.53043 * 109.28028 * 57.65010 * 13 8 7 15 15 N 1.46846 * 109.46157 * 208.89241 * 5 3 2 16 16 C 1.46900 * 111.00154 * 54.14611 * 15 5 3 17 17 C 1.52995 * 109.47463 * 175.97865 * 16 15 5 18 18 C 1.50705 * 109.47265 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00245 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99619 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00568 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99780 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47093 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47098 * 300.00061 * 22 20 18 25 25 H 1.48504 * 109.46990 * 60.00067 * 22 20 18 26 26 H 1.08998 * 109.46757 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46961 * 299.99713 * 1 2 3 28 28 H 1.09000 * 109.47017 * 59.99935 * 1 2 3 29 29 H 1.09001 * 109.50320 * 299.13668 * 7 5 3 30 30 H 1.09001 * 109.50523 * 59.25602 * 7 5 3 31 31 H 0.96696 * 116.99749 * 180.02562 * 12 10 8 32 32 H 1.08999 * 109.50759 * 177.58971 * 13 8 7 33 33 H 1.08997 * 109.50278 * 297.67034 * 13 8 7 34 34 H 1.08997 * 109.46230 * 180.79918 * 14 13 8 35 35 H 1.09001 * 109.45571 * 60.83693 * 14 13 8 36 36 H 1.09007 * 109.47295 * 55.97861 * 16 15 5 37 37 H 1.09002 * 109.47397 * 295.97973 * 16 15 5 38 38 H 1.08998 * 109.47081 * 59.99576 * 17 16 15 39 39 H 1.08999 * 109.47563 * 300.00086 * 17 16 15 40 40 H 0.97003 * 120.00506 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9751 0.4153 0.5304 7 6 4.0765 1.2728 -1.4434 8 6 5.6044 1.3734 -1.4395 9 1 5.9692 1.4158 -2.4658 10 6 6.1866 0.1687 -0.7461 11 8 5.4555 -0.6835 -0.2998 12 8 7.5174 0.0429 -0.6234 13 6 6.0225 2.6442 -0.6949 14 6 5.4559 2.6067 0.7263 15 7 3.9917 2.5110 0.6685 16 6 3.4042 2.6119 2.0111 17 6 3.9475 3.8579 2.7133 18 6 3.3452 3.9610 4.0909 19 1 2.6446 3.2130 4.4313 20 6 3.6886 5.0105 4.9165 21 7 4.5421 5.9212 4.5022 22 14 2.9415 5.1388 6.6238 23 1 3.4690 6.3481 7.3054 24 1 1.4642 5.2393 6.5114 25 1 3.2970 3.9312 7.4117 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.7739 0.3482 -1.9350 30 1 3.6571 2.1245 -1.9789 31 1 7.8438 -0.7471 -0.1713 32 1 7.1102 2.6995 -0.6515 33 1 5.6343 3.5175 -1.2190 34 1 5.7399 3.5167 1.2547 35 1 5.8559 1.7408 1.2539 36 1 3.6655 1.7258 2.5896 37 1 2.3197 2.6851 1.9286 38 1 3.6862 4.7440 2.1347 39 1 5.0319 3.7847 2.7958 40 1 4.7834 6.6597 5.0829 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598754787.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:03 Heat of formation + Delta-G solvation = -172.732959 kcal Electronic energy + Delta-G solvation = -23941.167815 eV Core-core repulsion = 20335.147107 eV Total energy + Delta-G solvation = -3606.020708 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.14420 -40.11246 -38.17812 -36.27680 -36.03533 -34.38244 -32.64114 -31.42550 -29.31218 -27.75532 -25.96334 -24.20120 -23.82711 -22.66450 -20.68425 -20.09419 -19.54090 -18.01983 -17.57552 -16.88260 -16.43900 -16.14741 -15.98799 -15.57277 -14.98486 -14.68266 -14.32023 -13.85954 -13.81826 -13.60390 -13.06875 -12.88577 -12.66303 -12.54225 -12.08883 -12.00097 -11.92064 -11.60300 -11.29543 -11.18392 -10.99985 -10.86772 -10.70366 -10.54426 -10.48364 -10.36022 -9.94594 -9.76198 -9.33849 -9.09170 -8.31931 -7.81081 -5.98842 -4.00598 2.10512 2.44290 2.80218 2.92741 3.35023 3.38832 3.41922 4.24700 4.46865 4.51489 4.62939 4.83932 5.05807 5.14426 5.18009 5.26508 5.32217 5.37273 5.39771 5.56933 5.58632 5.59784 5.78031 5.78296 5.93965 6.18300 6.23928 6.35029 6.46221 6.49117 6.53137 6.95747 7.33072 7.45058 7.71561 7.79361 7.87052 8.03898 8.08411 8.43969 9.04877 9.62643 11.12589 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.005490 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.387669 B = 5098.714335 C = 6377.199510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.465 3.535 4 O -0.479 6.479 5 C 0.084 3.916 6 H 0.090 0.910 7 C -0.090 4.090 8 C -0.078 4.078 9 H 0.116 0.884 10 C 0.481 3.519 11 O -0.510 6.510 12 O -0.515 6.515 13 C -0.111 4.111 14 C 0.049 3.951 15 N -0.519 5.519 16 C 0.053 3.947 17 C 0.028 3.972 18 C -0.521 4.521 19 H 0.052 0.948 20 C 0.060 3.940 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.287 1.287 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.097 0.903 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.408 0.592 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.026 0.974 36 H 0.018 0.982 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.526 -12.344 -14.316 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.306 3.694 4 O -0.364 6.364 5 C -0.026 4.026 6 H 0.107 0.893 7 C -0.128 4.128 8 C -0.097 4.097 9 H 0.134 0.866 10 C 0.323 3.677 11 O -0.397 6.397 12 O -0.326 6.326 13 C -0.149 4.149 14 C -0.078 4.078 15 N -0.246 5.246 16 C -0.073 4.073 17 C -0.009 4.009 18 C -0.560 4.560 19 H 0.071 0.929 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.720 3.280 23 H -0.212 1.212 24 H -0.202 1.202 25 H -0.203 1.203 26 H 0.116 0.884 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.267 0.733 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.126 0.874 35 H 0.044 0.956 36 H 0.036 0.964 37 H 0.091 0.909 38 H 0.046 0.954 39 H 0.037 0.963 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.841 -11.366 -14.610 18.602 hybrid contribution -0.160 -1.107 1.842 2.155 sum 1.681 -12.473 -12.768 17.928 Atomic orbital electron populations 1.23220 0.76806 1.03282 1.02572 1.86531 1.23037 1.33852 1.84455 1.23559 0.91713 0.81278 0.72863 1.90686 1.66660 1.36009 1.43008 1.21415 0.87529 0.95733 0.97895 0.89278 1.21449 0.92532 1.03927 0.94921 1.21148 0.95737 0.91780 1.01039 0.86633 1.23611 0.80023 0.87407 0.76649 1.90705 1.60543 1.42686 1.45809 1.84534 1.24912 1.49430 1.73746 1.21731 1.01325 0.95652 0.96172 1.22288 0.86849 1.02943 0.95728 1.61970 1.08418 1.32058 1.22120 1.22528 0.99884 1.00127 0.84760 1.19156 0.95984 0.91540 0.94222 1.21121 1.26147 1.09306 0.99409 0.92927 1.24963 0.95165 0.95639 0.98402 1.69946 1.33513 1.13028 1.36802 0.86652 0.79624 0.77356 0.84337 1.21221 1.20211 1.20315 0.88410 0.91817 0.92082 0.90029 0.88693 0.73314 0.89873 0.88905 0.87361 0.95557 0.96379 0.90896 0.95358 0.96256 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.36 -5.67 10.57 -39.26 -0.41 -6.08 16 3 C 0.47 8.24 6.13 36.00 0.22 8.46 16 4 O -0.48 -9.78 14.89 -18.75 -0.28 -10.06 16 5 C 0.08 1.39 2.06 -68.88 -0.14 1.25 16 6 H 0.09 1.58 5.72 -51.93 -0.30 1.28 16 7 C -0.09 -1.14 4.50 -26.65 -0.12 -1.26 16 8 C -0.08 -0.84 3.14 -91.65 -0.29 -1.13 16 9 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 10 C 0.48 5.72 6.23 36.01 0.22 5.94 16 11 O -0.51 -7.54 14.56 -18.75 -0.27 -7.81 16 12 O -0.51 -4.81 13.30 -39.26 -0.52 -5.33 16 13 C -0.11 -1.34 5.55 -26.65 -0.15 -1.48 16 14 C 0.05 0.82 4.83 -3.83 -0.02 0.80 16 15 N -0.52 -9.83 4.36 -228.08 -0.99 -10.82 16 16 C 0.05 1.21 4.52 -3.83 -0.02 1.20 16 17 C 0.03 0.75 4.47 -27.88 -0.12 0.62 16 18 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 19 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 22 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 28 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.08 0.93 8.04 -51.93 -0.42 0.52 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.41 2.25 9.10 45.56 0.41 2.66 16 32 H 0.08 0.86 8.07 -51.93 -0.42 0.45 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.11 2.02 5.84 -51.93 -0.30 1.72 16 35 H 0.03 0.45 7.31 -51.93 -0.38 0.07 16 36 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.07 1.77 6.11 -51.93 -0.32 1.46 16 38 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.02 0.52 6.19 -51.93 -0.32 0.20 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 325.92 15.07 4.91 4.91 Total: -1.00 -35.18 325.92 -6.58 -41.76 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -4.96 Total: 0.57 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 0.24 Total: 2.04 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.26 Total: -37.05 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -1.49 Total: -29.28 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.18 -6.58 -41.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598754787.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.978 kcal (2) G-P(sol) polarization free energy of solvation -35.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds