Wall clock time and date at job start Tue Mar 31 2020 06:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 117.00198 * 2 1 4 4 O 1.20826 * 119.99513 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00483 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.45171 * 328.86902 * 5 3 2 7 7 C 1.53031 * 109.46186 * 88.84007 * 5 3 2 8 8 C 1.53122 * 109.27973 * 179.19428 * 7 5 3 9 9 H 1.09004 * 109.52203 * 182.43830 * 8 7 5 10 10 C 1.50703 * 109.52098 * 62.25069 * 8 7 5 11 11 O 1.20829 * 119.99878 * 359.97438 * 10 8 7 12 12 O 1.34230 * 120.00114 * 180.02562 * 10 8 7 13 13 C 1.53114 * 109.16114 * 302.34706 * 8 7 5 14 14 C 1.53043 * 109.28028 * 57.65010 * 13 8 7 15 15 N 1.46846 * 109.46157 * 208.89241 * 5 3 2 16 16 C 1.46900 * 111.00154 * 54.14611 * 15 5 3 17 17 C 1.52995 * 109.47463 * 175.97865 * 16 15 5 18 18 C 1.50705 * 109.47265 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00245 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99619 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00568 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99780 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47093 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47098 * 300.00061 * 22 20 18 25 25 H 1.48504 * 109.46990 * 60.00067 * 22 20 18 26 26 H 1.08998 * 109.46757 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46961 * 299.99713 * 1 2 3 28 28 H 1.09000 * 109.47017 * 59.99935 * 1 2 3 29 29 H 1.09001 * 109.50320 * 299.13668 * 7 5 3 30 30 H 1.09001 * 109.50523 * 59.25602 * 7 5 3 31 31 H 0.96696 * 116.99749 * 180.02562 * 12 10 8 32 32 H 1.08999 * 109.50759 * 177.58971 * 13 8 7 33 33 H 1.08997 * 109.50278 * 297.67034 * 13 8 7 34 34 H 1.08997 * 109.46230 * 180.79918 * 14 13 8 35 35 H 1.09001 * 109.45571 * 60.83693 * 14 13 8 36 36 H 1.09007 * 109.47295 * 55.97861 * 16 15 5 37 37 H 1.09002 * 109.47397 * 295.97973 * 16 15 5 38 38 H 1.08998 * 109.47081 * 59.99576 * 17 16 15 39 39 H 1.08999 * 109.47563 * 300.00086 * 17 16 15 40 40 H 0.97003 * 120.00506 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9751 0.4153 0.5304 7 6 4.0765 1.2728 -1.4434 8 6 5.6044 1.3734 -1.4395 9 1 5.9692 1.4158 -2.4658 10 6 6.1866 0.1687 -0.7461 11 8 5.4555 -0.6835 -0.2998 12 8 7.5174 0.0429 -0.6234 13 6 6.0225 2.6442 -0.6949 14 6 5.4559 2.6067 0.7263 15 7 3.9917 2.5110 0.6685 16 6 3.4042 2.6119 2.0111 17 6 3.9475 3.8579 2.7133 18 6 3.3452 3.9610 4.0909 19 1 2.6446 3.2130 4.4313 20 6 3.6886 5.0105 4.9165 21 7 4.5421 5.9212 4.5022 22 14 2.9415 5.1388 6.6238 23 1 3.4690 6.3481 7.3054 24 1 1.4642 5.2393 6.5114 25 1 3.2970 3.9312 7.4117 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.7739 0.3482 -1.9350 30 1 3.6571 2.1245 -1.9789 31 1 7.8438 -0.7471 -0.1713 32 1 7.1102 2.6995 -0.6515 33 1 5.6343 3.5175 -1.2190 34 1 5.7399 3.5167 1.2547 35 1 5.8559 1.7408 1.2539 36 1 3.6655 1.7258 2.5896 37 1 2.3197 2.6851 1.9286 38 1 3.6862 4.7440 2.1347 39 1 5.0319 3.7847 2.7958 40 1 4.7834 6.6597 5.0829 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598754787.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:01 Heat of formation + Delta-G solvation = -198.477207 kcal Electronic energy + Delta-G solvation = -23942.284169 eV Core-core repulsion = 20335.147107 eV Total energy + Delta-G solvation = -3607.137062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.28758 -41.27163 -39.42568 -37.45601 -37.09556 -36.00909 -34.52201 -32.70646 -31.14041 -28.84768 -27.48093 -25.65983 -25.25176 -23.95632 -22.12670 -21.63211 -20.66378 -18.98266 -18.89124 -18.60514 -17.85935 -17.52552 -17.07123 -16.62871 -16.59990 -16.33378 -15.85240 -15.36126 -14.91991 -14.76031 -14.48015 -14.17861 -14.03998 -13.99857 -13.63193 -13.27368 -13.05903 -12.98505 -12.85616 -12.55142 -12.52120 -12.34710 -12.17333 -11.97813 -11.87970 -11.75453 -11.38935 -11.31447 -11.21809 -11.09561 -10.55794 -9.35547 -8.23588 -6.34780 1.05857 1.22397 1.36603 1.40092 1.48051 1.59807 2.14263 2.37054 2.85830 3.09258 3.47994 3.59539 3.86565 3.92092 4.01709 4.13576 4.27399 4.28164 4.28903 4.39186 4.41051 4.51917 4.64414 4.70447 4.73296 4.86964 4.91723 4.94504 5.02575 5.24784 5.28133 5.36705 5.57560 5.67446 5.69736 5.94265 6.01557 6.23912 6.72316 6.78652 7.02271 7.33415 8.88109 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.005490 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.387669 B = 5098.714335 C = 6377.199510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.465 3.535 4 O -0.515 6.515 5 C 0.082 3.918 6 H 0.081 0.919 7 C -0.087 4.087 8 C -0.072 4.072 9 H 0.163 0.837 10 C 0.482 3.518 11 O -0.545 6.545 12 O -0.507 6.507 13 C -0.101 4.101 14 C 0.048 3.952 15 N -0.525 5.525 16 C 0.072 3.928 17 C 0.041 3.959 18 C -0.552 4.552 19 H 0.050 0.950 20 C 0.008 3.992 21 N -0.925 5.925 22 Si 0.964 3.036 23 H -0.276 1.276 24 H -0.271 1.271 25 H -0.267 1.267 26 H 0.136 0.864 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.425 0.575 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.020 0.980 36 H 0.010 0.990 37 H 0.054 0.946 38 H -0.004 1.004 39 H 0.009 0.991 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -13.375 -15.272 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.307 3.693 4 O -0.402 6.402 5 C -0.027 4.027 6 H 0.098 0.902 7 C -0.124 4.124 8 C -0.091 4.091 9 H 0.180 0.820 10 C 0.326 3.674 11 O -0.435 6.435 12 O -0.320 6.320 13 C -0.138 4.138 14 C -0.079 4.079 15 N -0.252 5.252 16 C -0.055 4.055 17 C 0.004 3.996 18 C -0.590 4.590 19 H 0.069 0.931 20 C -0.191 4.191 21 N -0.564 5.564 22 Si 0.788 3.212 23 H -0.201 1.201 24 H -0.196 1.196 25 H -0.192 1.192 26 H 0.154 0.846 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.287 0.713 32 H 0.125 0.875 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.038 0.962 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.015 0.985 39 H 0.028 0.972 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.360 -12.428 -15.581 20.070 hybrid contribution -0.298 -0.835 2.129 2.306 sum 2.062 -13.263 -13.451 19.003 Atomic orbital electron populations 1.23571 0.74724 1.05816 1.02475 1.86519 1.25122 1.32648 1.83820 1.23830 0.92212 0.81340 0.71880 1.90667 1.67444 1.37174 1.44912 1.21570 0.87080 0.93830 1.00214 0.90186 1.21511 0.93976 1.05133 0.91810 1.21207 0.94303 0.90352 1.03218 0.81966 1.23796 0.80484 0.87166 0.75922 1.90702 1.61456 1.44081 1.47299 1.84488 1.23504 1.50474 1.73578 1.21685 1.02444 0.96869 0.92845 1.22320 0.85502 1.01113 0.99013 1.61896 1.09790 1.33951 1.19514 1.22078 0.98708 0.97846 0.86868 1.18933 0.95297 0.91924 0.93485 1.21515 1.26751 1.09900 1.00854 0.93146 1.25880 0.95401 0.94984 1.02813 1.70064 1.34398 1.13492 1.38487 0.85527 0.78827 0.77951 0.78896 1.20112 1.19579 1.19195 0.84564 0.92955 0.91217 0.88368 0.87957 0.71339 0.87515 0.88097 0.90282 0.96193 0.97132 0.92777 0.98545 0.97236 0.92506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.36 -11.25 10.57 -51.42 -0.54 -11.79 16 3 C 0.46 16.61 6.13 71.24 0.44 17.04 16 4 O -0.51 -21.52 14.89 21.96 0.33 -21.19 16 5 C 0.08 2.73 2.06 44.19 0.09 2.82 16 6 H 0.08 2.85 5.72 -2.39 -0.01 2.84 16 7 C -0.09 -2.00 4.50 30.65 0.14 -1.87 16 8 C -0.07 -1.33 3.14 -11.46 -0.04 -1.36 16 9 H 0.16 1.60 8.14 -2.38 -0.02 1.58 16 10 C 0.48 10.31 6.23 71.24 0.44 10.76 16 11 O -0.54 -15.37 14.56 21.95 0.32 -15.05 16 12 O -0.51 -8.02 13.30 -51.41 -0.68 -8.71 16 13 C -0.10 -2.21 5.55 30.65 0.17 -2.04 16 14 C 0.05 1.60 4.83 86.33 0.42 2.02 16 15 N -0.52 -20.38 4.36 -875.52 -3.82 -24.20 16 16 C 0.07 3.46 4.52 86.30 0.39 3.85 16 17 C 0.04 2.28 4.47 29.85 0.13 2.42 16 18 C -0.55 -33.19 9.11 25.60 0.23 -32.95 16 19 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 20 C 0.01 0.47 5.46 84.65 0.46 0.93 16 21 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 22 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 28 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 29 H 0.10 1.99 8.04 -2.39 -0.02 1.97 16 30 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.43 3.64 9.10 -74.06 -0.67 2.96 16 32 H 0.11 1.89 8.07 -2.39 -0.02 1.87 16 33 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.08 3.10 5.84 -2.39 -0.01 3.09 16 35 H 0.02 0.69 7.31 -2.39 -0.02 0.67 16 36 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.05 2.77 6.11 -2.39 -0.01 2.76 16 38 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.01 0.54 6.19 -2.39 -0.01 0.53 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -78.81 325.92 2.37 -76.44 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.39 Total: 10.06 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 4.08 Total: 3.43 kcal Atomic # 7 Polarization: -77.24 SS G_CDS: -3.53 Total: -80.78 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -0.58 Total: -56.74 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -78.81 2.37 -76.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598754787.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.042 kcal (2) G-P(sol) polarization free energy of solvation -78.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds