Wall clock time and date at job start Tue Mar 31 2020 06:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34233 * 116.99808 * 2 1 4 4 O 1.20825 * 119.99910 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99965 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46077 * 31.05942 * 5 3 2 7 7 C 1.53167 * 109.44737 * 271.11947 * 5 3 2 8 8 C 1.53124 * 109.20824 * 180.83347 * 7 5 3 9 9 H 1.08992 * 109.52029 * 177.56420 * 8 7 5 10 10 C 1.50700 * 109.52315 * 297.69197 * 8 7 5 11 11 O 1.20825 * 119.99842 * 0.14425 * 10 8 7 12 12 O 1.34225 * 120.00266 * 179.87292 * 10 8 7 13 13 C 1.53120 * 109.20873 * 57.62622 * 8 7 5 14 14 C 1.53040 * 109.27782 * 302.31163 * 13 8 7 15 15 N 1.46844 * 109.52249 * 59.18573 * 14 13 8 16 16 C 1.46897 * 110.99773 * 174.15922 * 15 14 13 17 17 C 1.53002 * 109.47486 * 65.42831 * 16 15 14 18 18 C 1.50693 * 109.47101 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00447 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99947 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99668 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00101 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47001 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46994 * 119.99854 * 22 20 18 25 25 H 1.48493 * 109.47064 * 240.00184 * 22 20 18 26 26 H 1.09010 * 109.46785 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47342 * 299.99903 * 1 2 3 28 28 H 1.09000 * 109.47180 * 60.00400 * 1 2 3 29 29 H 1.09001 * 109.58889 * 60.88903 * 7 5 3 30 30 H 1.08996 * 109.48966 * 300.72319 * 7 5 3 31 31 H 0.96700 * 117.00158 * 179.97438 * 12 10 8 32 32 H 1.09000 * 109.50257 * 62.25878 * 13 8 7 33 33 H 1.09006 * 109.49766 * 182.37734 * 13 8 7 34 34 H 1.09005 * 109.45984 * 179.19705 * 14 13 8 35 35 H 1.08999 * 109.46489 * 299.17703 * 14 13 8 36 36 H 1.09005 * 109.46924 * 185.42787 * 16 15 14 37 37 H 1.08997 * 109.47326 * 305.42630 * 16 15 14 38 38 H 1.08995 * 109.46921 * 299.99928 * 17 16 15 39 39 H 1.08997 * 109.47001 * 59.99601 * 17 16 15 40 40 H 0.97001 * 119.99662 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9753 0.4147 -0.5293 7 6 4.0764 1.2738 1.4448 8 6 5.6043 1.3751 1.4395 9 1 5.9700 1.4182 2.4653 10 6 6.1866 0.1696 0.7475 11 8 5.4554 -0.6826 0.3013 12 8 7.5171 0.0452 0.6220 13 6 6.0224 2.6451 0.6932 14 6 5.4559 2.6057 -0.7279 15 7 3.9917 2.5102 -0.6700 16 6 3.4042 2.6094 -2.0127 17 6 3.8286 1.3984 -2.8460 18 6 3.2253 1.5000 -4.2232 19 1 2.6020 2.3440 -4.4788 20 6 3.4701 0.5157 -5.1573 21 7 4.2296 -0.5119 -4.8462 22 14 2.7229 0.6420 -6.8647 23 1 1.9152 1.8844 -6.9610 24 1 3.8077 0.6777 -7.8783 25 1 1.8525 -0.5353 -7.1124 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.7748 0.3498 1.9382 30 1 3.6571 2.1261 1.9793 31 1 7.8436 -0.7454 0.1709 32 1 5.6337 3.5190 1.2160 33 1 7.1102 2.7002 0.6499 34 1 5.7398 3.5152 -1.2574 35 1 5.8557 1.7391 -1.2544 36 1 2.3173 2.6327 -1.9330 37 1 3.7527 3.5225 -2.4953 38 1 4.9153 1.3751 -2.9257 39 1 3.4800 0.4853 -2.3635 40 1 4.4020 -1.2041 -5.5034 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598754790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:06 Heat of formation + Delta-G solvation = -174.137445 kcal Electronic energy + Delta-G solvation = -24502.399858 eV Core-core repulsion = 20896.318247 eV Total energy + Delta-G solvation = -3606.081611 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = -0.02 seconds Orbital eigenvalues (eV) -41.01110 -39.91011 -38.08189 -36.06327 -35.83357 -34.37790 -32.56161 -31.25593 -29.21807 -27.55747 -25.89376 -24.00894 -23.79586 -22.47724 -21.09373 -20.24304 -19.03911 -17.77887 -17.31205 -16.62264 -16.40984 -16.12723 -15.83625 -15.31906 -14.84350 -14.66842 -14.46387 -13.85536 -13.57918 -13.33748 -12.89921 -12.71182 -12.52255 -12.26868 -12.19510 -11.82911 -11.74808 -11.42447 -11.32448 -11.13717 -10.99556 -10.88953 -10.69456 -10.42521 -10.33645 -10.22718 -9.91318 -9.75689 -9.60419 -9.12178 -8.35491 -7.59267 -6.00626 -4.03906 2.33124 2.63787 3.04158 3.10229 3.30052 3.37434 3.42311 4.36299 4.47939 4.58721 4.70564 4.91367 5.21752 5.25425 5.34088 5.36823 5.46294 5.48150 5.55281 5.64387 5.74074 5.77723 5.79329 5.89528 6.08545 6.17387 6.26270 6.30181 6.62259 6.70606 6.75352 6.90413 7.32988 7.40682 7.64283 7.77139 7.97798 8.01333 8.25844 8.40732 9.02590 9.60154 11.10175 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013859 B = 0.006712 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.882138 B = 4170.408250 C = 5094.823998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.477 3.523 4 O -0.496 6.496 5 C 0.080 3.920 6 H 0.108 0.892 7 C -0.092 4.092 8 C -0.076 4.076 9 H 0.114 0.886 10 C 0.474 3.526 11 O -0.496 6.496 12 O -0.519 6.519 13 C -0.110 4.110 14 C 0.050 3.950 15 N -0.522 5.522 16 C 0.045 3.955 17 C -0.010 4.010 18 C -0.519 4.519 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.891 5.891 22 Si 0.891 3.109 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.410 0.590 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.017 0.983 39 H 0.018 0.982 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 2.036 15.024 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.319 3.681 4 O -0.382 6.382 5 C -0.029 4.029 6 H 0.125 0.875 7 C -0.130 4.130 8 C -0.095 4.095 9 H 0.132 0.868 10 C 0.315 3.685 11 O -0.382 6.382 12 O -0.331 6.331 13 C -0.147 4.147 14 C -0.078 4.078 15 N -0.248 5.248 16 C -0.081 4.081 17 C -0.048 4.048 18 C -0.558 4.558 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.530 5.530 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.269 0.731 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.448 2.686 15.308 15.734 hybrid contribution -0.098 -1.300 -1.940 2.337 sum 2.350 1.386 13.368 13.644 Atomic orbital electron populations 1.23201 0.76976 1.03323 1.02224 1.86559 1.22889 1.33610 1.84004 1.23419 0.91606 0.81181 0.71897 1.90602 1.66932 1.36221 1.44410 1.21438 0.87761 0.96629 0.97120 0.87482 1.21493 0.92492 1.03774 0.95235 1.21092 0.95834 0.91758 1.00837 0.86840 1.23511 0.80153 0.87665 0.77138 1.90776 1.60346 1.42377 1.44697 1.84476 1.24992 1.49604 1.74020 1.21697 1.01160 0.95763 0.96112 1.22140 0.87666 1.02320 0.95660 1.62225 1.08024 1.33014 1.21491 1.22552 0.99723 1.00561 0.85264 1.19683 0.96920 0.93009 0.95181 1.21141 1.30594 1.07170 0.96880 0.92544 1.25026 0.95216 0.95323 0.98763 1.69992 1.37726 1.10610 1.34668 0.86545 0.79075 0.78059 0.84420 1.19673 1.20989 1.20988 0.88438 0.92385 0.91779 0.89963 0.89059 0.73134 0.89347 0.90003 0.89602 0.93887 0.90927 0.91298 0.96509 0.96426 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.60 16 2 O -0.35 -6.71 10.57 -39.27 -0.41 -7.13 16 3 C 0.48 9.48 6.01 36.00 0.22 9.70 16 4 O -0.50 -10.47 14.91 -18.75 -0.28 -10.75 16 5 C 0.08 1.49 1.48 -68.81 -0.10 1.39 16 6 H 0.11 2.34 4.19 -51.93 -0.22 2.13 16 7 C -0.09 -1.28 4.51 -26.58 -0.12 -1.40 16 8 C -0.08 -0.90 3.13 -91.65 -0.29 -1.18 16 9 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 10 C 0.47 6.70 6.23 36.01 0.22 6.92 16 11 O -0.50 -9.05 14.56 -18.75 -0.27 -9.32 16 12 O -0.52 -5.91 13.29 -39.25 -0.52 -6.43 16 13 C -0.11 -1.28 5.55 -26.65 -0.15 -1.43 16 14 C 0.05 0.81 4.83 -3.83 -0.02 0.79 16 15 N -0.52 -9.84 4.46 -228.00 -1.02 -10.85 16 16 C 0.05 1.02 4.80 -3.82 -0.02 1.00 16 17 C -0.01 -0.26 4.28 -27.89 -0.12 -0.38 16 18 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 22 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 H 0.10 1.12 8.14 -51.92 -0.42 0.70 16 27 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 29 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.41 3.37 9.10 45.56 0.41 3.79 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 35 H 0.04 0.81 5.90 -51.93 -0.31 0.50 16 36 H 0.07 1.75 6.02 -51.93 -0.31 1.44 16 37 H 0.07 1.50 8.07 -51.93 -0.42 1.08 16 38 H 0.02 0.47 6.66 -51.93 -0.35 0.12 16 39 H 0.02 0.51 6.45 -51.93 -0.33 0.18 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -35.83 323.35 -6.49 -42.32 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -4.85 Total: 3.54 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 0.28 Total: 3.19 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: -0.28 Total: -37.40 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.49 Total: -33.64 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.83 -6.49 -42.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598754790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.822 kcal (2) G-P(sol) polarization free energy of solvation -35.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.02 seconds