Wall clock time and date at job start Tue Mar 31 2020 06:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34233 * 116.99808 * 2 1 4 4 O 1.20825 * 119.99910 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99965 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.46077 * 31.05942 * 5 3 2 7 7 C 1.53167 * 109.44737 * 271.11947 * 5 3 2 8 8 C 1.53124 * 109.20824 * 180.83347 * 7 5 3 9 9 H 1.08992 * 109.52029 * 177.56420 * 8 7 5 10 10 C 1.50700 * 109.52315 * 297.69197 * 8 7 5 11 11 O 1.20825 * 119.99842 * 0.14425 * 10 8 7 12 12 O 1.34225 * 120.00266 * 179.87292 * 10 8 7 13 13 C 1.53120 * 109.20873 * 57.62622 * 8 7 5 14 14 C 1.53040 * 109.27782 * 302.31163 * 13 8 7 15 15 N 1.46844 * 109.52249 * 59.18573 * 14 13 8 16 16 C 1.46897 * 110.99773 * 174.15922 * 15 14 13 17 17 C 1.53002 * 109.47486 * 65.42831 * 16 15 14 18 18 C 1.50693 * 109.47101 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00447 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99947 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99668 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00101 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47001 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46994 * 119.99854 * 22 20 18 25 25 H 1.48493 * 109.47064 * 240.00184 * 22 20 18 26 26 H 1.09010 * 109.46785 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47342 * 299.99903 * 1 2 3 28 28 H 1.09000 * 109.47180 * 60.00400 * 1 2 3 29 29 H 1.09001 * 109.58889 * 60.88903 * 7 5 3 30 30 H 1.08996 * 109.48966 * 300.72319 * 7 5 3 31 31 H 0.96700 * 117.00158 * 179.97438 * 12 10 8 32 32 H 1.09000 * 109.50257 * 62.25878 * 13 8 7 33 33 H 1.09006 * 109.49766 * 182.37734 * 13 8 7 34 34 H 1.09005 * 109.45984 * 179.19705 * 14 13 8 35 35 H 1.08999 * 109.46489 * 299.17703 * 14 13 8 36 36 H 1.09005 * 109.46924 * 185.42787 * 16 15 14 37 37 H 1.08997 * 109.47326 * 305.42630 * 16 15 14 38 38 H 1.08995 * 109.46921 * 299.99928 * 17 16 15 39 39 H 1.08997 * 109.47001 * 59.99601 * 17 16 15 40 40 H 0.97001 * 119.99662 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9753 0.4147 -0.5293 7 6 4.0764 1.2738 1.4448 8 6 5.6043 1.3751 1.4395 9 1 5.9700 1.4182 2.4653 10 6 6.1866 0.1696 0.7475 11 8 5.4554 -0.6826 0.3013 12 8 7.5171 0.0452 0.6220 13 6 6.0224 2.6451 0.6932 14 6 5.4559 2.6057 -0.7279 15 7 3.9917 2.5102 -0.6700 16 6 3.4042 2.6094 -2.0127 17 6 3.8286 1.3984 -2.8460 18 6 3.2253 1.5000 -4.2232 19 1 2.6020 2.3440 -4.4788 20 6 3.4701 0.5157 -5.1573 21 7 4.2296 -0.5119 -4.8462 22 14 2.7229 0.6420 -6.8647 23 1 1.9152 1.8844 -6.9610 24 1 3.8077 0.6777 -7.8783 25 1 1.8525 -0.5353 -7.1124 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 3.7748 0.3498 1.9382 30 1 3.6571 2.1261 1.9793 31 1 7.8436 -0.7454 0.1709 32 1 5.6337 3.5190 1.2160 33 1 7.1102 2.7002 0.6499 34 1 5.7398 3.5152 -1.2574 35 1 5.8557 1.7391 -1.2544 36 1 2.3173 2.6327 -1.9330 37 1 3.7527 3.5225 -2.4953 38 1 4.9153 1.3751 -2.9257 39 1 3.4800 0.4853 -2.3635 40 1 4.4020 -1.2041 -5.5034 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598754790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:05 Heat of formation + Delta-G solvation = -201.027637 kcal Electronic energy + Delta-G solvation = -24503.565904 eV Core-core repulsion = 20896.318247 eV Total energy + Delta-G solvation = -3607.247657 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.30420 -41.24371 -39.44455 -37.41327 -37.08071 -36.01790 -34.51618 -32.52366 -31.10776 -28.82938 -27.49606 -25.53791 -25.23995 -23.90846 -22.76462 -21.55241 -20.38172 -18.91273 -18.78582 -18.62982 -17.89022 -17.55583 -17.02474 -16.65828 -16.46742 -16.24736 -16.10323 -15.23614 -14.96238 -14.56973 -14.33649 -14.22218 -14.04115 -13.99677 -13.60285 -13.19588 -13.03315 -13.02123 -12.88335 -12.66520 -12.49241 -12.38180 -12.21458 -12.00608 -11.83015 -11.60764 -11.57992 -11.38563 -11.28496 -11.08525 -10.62351 -9.24538 -8.26768 -6.40311 1.09575 1.26520 1.33257 1.33946 1.47835 1.68682 2.15572 2.33955 2.92991 3.04747 3.50234 3.62359 3.88881 3.96412 4.03539 4.25057 4.27433 4.29357 4.33271 4.45446 4.51500 4.57966 4.62494 4.72853 4.76453 4.86424 4.88144 4.96499 5.01408 5.27526 5.30099 5.38604 5.43913 5.61365 5.70372 5.83617 6.03334 6.20471 6.74035 6.75851 7.02063 7.29184 8.84168 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013859 B = 0.006712 C = 0.005494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.882138 B = 4170.408250 C = 5094.823998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.472 3.528 4 O -0.514 6.514 5 C 0.076 3.924 6 H 0.071 0.929 7 C -0.087 4.087 8 C -0.072 4.072 9 H 0.166 0.834 10 C 0.473 3.527 11 O -0.548 6.548 12 O -0.509 6.509 13 C -0.097 4.097 14 C 0.044 3.956 15 N -0.511 5.511 16 C 0.061 3.939 17 C 0.009 3.991 18 C -0.546 4.546 19 H 0.058 0.942 20 C 0.003 3.997 21 N -0.928 5.928 22 Si 0.966 3.034 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.277 1.277 26 H 0.129 0.871 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.422 0.578 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.008 0.992 36 H 0.054 0.946 37 H 0.076 0.924 38 H -0.005 1.005 39 H -0.018 1.018 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.596 3.249 16.178 16.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C 0.315 3.685 4 O -0.402 6.402 5 C -0.033 4.033 6 H 0.088 0.912 7 C -0.125 4.125 8 C -0.091 4.091 9 H 0.183 0.817 10 C 0.316 3.684 11 O -0.438 6.438 12 O -0.322 6.322 13 C -0.135 4.135 14 C -0.084 4.084 15 N -0.236 5.236 16 C -0.067 4.067 17 C -0.029 4.029 18 C -0.584 4.584 19 H 0.076 0.924 20 C -0.195 4.195 21 N -0.567 5.567 22 Si 0.790 3.210 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.203 1.203 26 H 0.147 0.853 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.131 0.869 31 H 0.283 0.717 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.013 0.987 39 H 0.000 1.000 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.920 3.903 16.482 17.188 hybrid contribution -0.215 -1.749 -2.307 2.902 sum 2.705 2.155 14.176 14.592 Atomic orbital electron populations 1.23541 0.74778 1.05601 1.02532 1.86547 1.25268 1.33394 1.83683 1.23752 0.92248 0.81170 0.71342 1.90572 1.67419 1.36657 1.45584 1.21557 0.87119 0.94815 0.99829 0.91157 1.21559 0.94197 1.05018 0.91706 1.21267 0.94099 0.90397 1.03291 0.81684 1.24110 0.80437 0.87699 0.76109 1.90776 1.61572 1.44514 1.46971 1.84440 1.23667 1.50328 1.73725 1.21709 1.02495 0.96585 0.92682 1.22341 0.85800 1.01106 0.99133 1.62294 1.09660 1.33050 1.18632 1.22225 0.98807 0.98656 0.87003 1.19434 0.95080 0.93440 0.94955 1.21562 1.31060 1.07566 0.98252 0.92401 1.25996 0.95457 0.94689 1.03408 1.70130 1.38846 1.11398 1.36354 0.85388 0.78458 0.78463 0.78707 1.18627 1.19818 1.20306 0.85287 0.90383 0.93144 0.89460 0.86893 0.71703 0.86669 0.87447 0.88811 0.97344 0.92731 0.90593 0.98722 0.99973 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.56 113.37 1.20 2.03 16 2 O -0.37 -14.57 10.57 -51.45 -0.54 -15.11 16 3 C 0.47 19.24 6.01 71.23 0.43 19.67 16 4 O -0.51 -22.05 14.91 21.97 0.33 -21.72 16 5 C 0.08 2.91 1.48 44.23 0.07 2.97 16 6 H 0.07 3.28 4.19 -2.39 -0.01 3.27 16 7 C -0.09 -2.28 4.51 30.69 0.14 -2.14 16 8 C -0.07 -1.49 3.13 -11.46 -0.04 -1.52 16 9 H 0.17 1.84 8.14 -2.39 -0.02 1.82 16 10 C 0.47 12.99 6.23 71.24 0.44 13.44 16 11 O -0.55 -20.79 14.56 21.97 0.32 -20.47 16 12 O -0.51 -10.86 13.29 -51.37 -0.68 -11.54 16 13 C -0.10 -1.96 5.55 30.65 0.17 -1.79 16 14 C 0.04 1.39 4.83 86.33 0.42 1.80 16 15 N -0.51 -19.41 4.46 -875.25 -3.90 -23.31 16 16 C 0.06 2.83 4.80 86.30 0.41 3.24 16 17 C 0.01 0.52 4.28 29.85 0.13 0.64 16 18 C -0.55 -32.82 9.11 25.60 0.23 -32.59 16 19 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 20 C 0.00 0.17 5.46 84.66 0.46 0.64 16 21 N -0.93 -58.53 13.29 21.45 0.28 -58.24 16 22 Si 0.97 45.90 29.54 68.60 2.03 47.93 16 23 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 25 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 26 H 0.13 2.85 8.14 -2.38 -0.02 2.83 16 27 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 28 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16 29 H 0.09 2.20 8.05 -2.39 -0.02 2.18 16 30 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.42 6.72 9.10 -74.06 -0.67 6.05 16 32 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.11 1.70 8.07 -2.38 -0.02 1.68 16 34 H 0.09 2.79 8.07 -2.38 -0.02 2.77 16 35 H 0.01 0.32 5.90 -2.39 -0.01 0.31 16 36 H 0.05 2.73 6.02 -2.38 -0.01 2.71 16 37 H 0.08 3.37 8.07 -2.39 -0.02 3.35 16 38 H -0.01 -0.33 6.66 -2.39 -0.02 -0.34 16 39 H -0.02 -1.13 6.45 -2.39 -0.02 -1.15 16 40 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -82.08 323.35 2.28 -79.80 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.39 Total: 16.26 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 4.06 Total: 6.40 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -3.62 Total: -81.55 kcal Atomic # 8 Polarization: -68.25 SS G_CDS: -0.58 Total: -68.83 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -82.08 2.28 -79.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598754790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.230 kcal (2) G-P(sol) polarization free energy of solvation -82.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds