Wall clock time and date at job start Tue Mar 31 2020 06:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 116.99960 * 2 1 4 4 O 1.20825 * 119.99951 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00167 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.46395 * 328.96841 * 5 3 2 7 7 C 1.53045 * 109.45722 * 88.87002 * 5 3 2 8 8 C 1.53125 * 109.27256 * 179.13229 * 7 5 3 9 9 H 1.08997 * 109.51950 * 62.37738 * 8 7 5 10 10 C 1.50697 * 109.52466 * 182.50661 * 8 7 5 11 11 O 1.20830 * 120.00083 * 359.59568 * 10 8 7 12 12 O 1.34224 * 120.00234 * 179.87462 * 10 8 7 13 13 C 1.53118 * 109.21229 * 302.44132 * 8 7 5 14 14 C 1.53037 * 109.27936 * 57.62408 * 13 8 7 15 15 N 1.46849 * 109.46431 * 208.98593 * 5 3 2 16 16 C 1.46896 * 110.99763 * 54.14575 * 15 5 3 17 17 C 1.52998 * 109.47046 * 58.86963 * 16 15 5 18 18 C 1.50702 * 109.47131 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00088 * 359.97438 * 18 17 16 20 20 C 1.37883 * 120.00214 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99854 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00010 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47308 * 60.00175 * 22 20 18 24 24 H 1.48500 * 109.46748 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47330 * 299.99724 * 22 20 18 26 26 H 1.09005 * 109.47345 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47573 * 300.00040 * 1 2 3 28 28 H 1.09000 * 109.47197 * 60.00433 * 1 2 3 29 29 H 1.08997 * 109.45520 * 59.22949 * 7 5 3 30 30 H 1.09000 * 109.55829 * 299.10328 * 7 5 3 31 31 H 0.96701 * 117.00362 * 179.97438 * 12 10 8 32 32 H 1.09005 * 109.50113 * 177.56201 * 13 8 7 33 33 H 1.08998 * 109.50356 * 297.68189 * 13 8 7 34 34 H 1.09001 * 109.46449 * 60.83457 * 14 13 8 35 35 H 1.09005 * 109.46414 * 180.80787 * 14 13 8 36 36 H 1.09002 * 109.46790 * 178.86929 * 16 15 5 37 37 H 1.09004 * 109.47583 * 298.87103 * 16 15 5 38 38 H 1.09002 * 109.47298 * 299.99654 * 17 16 15 39 39 H 1.08996 * 109.47560 * 59.99925 * 17 16 15 40 40 H 0.96998 * 120.00097 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9749 0.4147 0.5307 7 6 4.0774 1.2729 -1.4420 8 6 5.6053 1.3750 -1.4369 9 1 6.0269 0.5032 -0.9368 10 6 6.1107 1.4355 -2.8553 11 8 5.3305 1.3932 -3.7770 12 8 7.4279 1.5307 -3.0950 13 6 6.0229 2.6450 -0.6904 14 6 5.4554 2.6056 0.7303 15 7 3.9912 2.5101 0.6715 16 6 3.4028 2.6094 2.0137 17 6 3.8284 1.3995 2.8479 18 6 3.2251 1.5016 4.2251 19 1 2.6010 2.3453 4.4801 20 6 3.4709 0.5184 5.1601 21 7 4.2313 -0.5088 4.8497 22 14 2.7238 0.6454 6.8674 23 1 1.2430 0.6750 6.7588 24 1 3.1378 -0.5284 7.6773 25 1 3.1971 1.8906 7.5235 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.6576 2.1246 -1.9771 30 1 3.7761 0.3484 -1.9346 31 1 7.7043 1.5661 -4.0210 32 1 7.1107 2.7001 -0.6464 33 1 5.6345 3.5189 -1.2133 34 1 5.8550 1.7391 1.2572 35 1 5.7390 3.5152 1.2600 36 1 3.7497 3.5233 2.4958 37 1 2.3159 2.6310 1.9333 38 1 3.4814 0.4855 2.3657 39 1 4.9151 1.3777 2.9284 40 1 4.4039 -1.2006 5.5073 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598754792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:09 Heat of formation + Delta-G solvation = -179.855129 kcal Electronic energy + Delta-G solvation = -23811.030808 eV Core-core repulsion = 20204.701260 eV Total energy + Delta-G solvation = -3606.329548 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.87543 -40.15080 -38.35377 -36.28529 -35.97293 -34.42837 -32.61917 -31.35937 -29.33453 -27.62030 -26.14106 -24.09439 -23.77071 -22.13389 -21.17899 -20.45569 -19.05347 -18.19179 -17.41967 -16.87298 -16.47301 -16.12821 -15.86131 -15.59175 -14.89820 -14.74211 -14.51822 -13.86937 -13.64506 -13.60449 -13.12357 -12.79423 -12.58837 -12.32515 -12.15479 -11.82337 -11.70283 -11.65521 -11.28905 -11.11794 -11.02761 -10.91192 -10.84931 -10.65969 -10.47939 -10.29726 -9.98350 -9.90948 -9.67455 -9.21658 -8.40310 -7.69491 -6.06835 -4.09584 2.09607 2.52215 2.80259 3.08351 3.29867 3.34214 3.37176 4.25814 4.42855 4.54079 4.69200 4.92496 5.11941 5.16890 5.28521 5.32841 5.38260 5.43094 5.45100 5.53707 5.69652 5.73557 5.74927 5.85903 6.07830 6.11790 6.23340 6.26717 6.37159 6.58450 6.67523 6.83782 7.25829 7.33209 7.56699 7.69513 7.77120 7.91585 8.16576 8.34864 8.96141 9.54984 11.04276 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017140 B = 0.005125 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.223288 B = 5461.653324 C = 6437.233052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.358 6.358 3 C 0.476 3.524 4 O -0.490 6.490 5 C 0.095 3.905 6 H 0.087 0.913 7 C -0.091 4.091 8 C -0.078 4.078 9 H 0.114 0.886 10 C 0.488 3.512 11 O -0.516 6.516 12 O -0.515 6.515 13 C -0.108 4.108 14 C 0.057 3.943 15 N -0.523 5.523 16 C 0.045 3.955 17 C -0.011 4.011 18 C -0.520 4.520 19 H 0.055 0.945 20 C 0.060 3.940 21 N -0.894 5.894 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.098 0.902 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.407 0.593 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.016 0.984 39 H 0.020 0.980 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.183 1.604 -13.857 14.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.274 6.274 3 C 0.318 3.682 4 O -0.375 6.375 5 C -0.015 4.015 6 H 0.105 0.895 7 C -0.129 4.129 8 C -0.098 4.098 9 H 0.132 0.868 10 C 0.330 3.670 11 O -0.404 6.404 12 O -0.326 6.326 13 C -0.145 4.145 14 C -0.071 4.071 15 N -0.249 5.249 16 C -0.081 4.081 17 C -0.049 4.049 18 C -0.559 4.559 19 H 0.074 0.926 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.116 0.884 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.266 0.734 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.035 0.965 39 H 0.039 0.961 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.495 2.114 -13.906 14.286 hybrid contribution -0.149 -0.710 0.937 1.185 sum 2.346 1.405 -12.969 13.254 Atomic orbital electron populations 1.23210 0.76666 1.03401 1.02355 1.86509 1.23181 1.33576 1.84126 1.23291 0.91448 0.81326 0.72155 1.90621 1.66754 1.36211 1.43945 1.21099 0.87888 0.95913 0.96558 0.89543 1.21437 0.92492 1.04503 0.94428 1.21090 0.96705 1.02800 0.89164 0.86769 1.23485 0.79723 0.71176 0.92603 1.90720 1.57084 1.45827 1.46736 1.84556 1.26583 1.85243 1.36224 1.21665 1.01159 0.95566 0.96155 1.22086 0.87154 1.02767 0.95105 1.62214 1.08453 1.32578 1.21641 1.22567 0.99763 1.00694 0.85079 1.19706 0.97148 0.92896 0.95171 1.21064 1.30675 1.07277 0.96879 0.92638 1.24993 0.95124 0.95283 0.98752 1.69940 1.37655 1.10699 1.35009 0.86653 0.79679 0.77514 0.84160 1.20227 1.21249 1.20163 0.88361 0.91700 0.92285 0.89486 0.89904 0.73415 0.89926 0.90539 0.92930 0.89499 0.91148 0.90907 0.96543 0.96141 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.58 16 2 O -0.36 -6.23 10.57 -39.25 -0.41 -6.65 16 3 C 0.48 8.90 6.02 36.01 0.22 9.12 16 4 O -0.49 -10.08 14.91 -18.75 -0.28 -10.36 16 5 C 0.10 1.62 1.75 -68.87 -0.12 1.50 16 6 H 0.09 1.56 6.62 -51.93 -0.34 1.21 16 7 C -0.09 -1.27 3.95 -26.64 -0.11 -1.38 16 8 C -0.08 -0.94 2.69 -91.65 -0.25 -1.18 16 9 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 10 C 0.49 5.68 7.63 36.00 0.27 5.95 16 11 O -0.52 -7.47 16.74 -18.75 -0.31 -7.79 16 12 O -0.51 -4.52 13.35 -39.24 -0.52 -5.04 16 13 C -0.11 -1.26 5.31 -26.65 -0.14 -1.40 16 14 C 0.06 0.84 5.03 -3.83 -0.02 0.82 16 15 N -0.52 -9.26 4.46 -228.07 -1.02 -10.28 16 16 C 0.05 0.96 4.80 -3.83 -0.02 0.94 16 17 C -0.01 -0.28 4.28 -27.88 -0.12 -0.39 16 18 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 22 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 28 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.09 1.31 8.05 -51.93 -0.42 0.90 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.41 1.82 9.10 45.56 0.41 2.24 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.84 6.74 -51.93 -0.35 0.49 16 35 H 0.09 1.23 8.07 -51.93 -0.42 0.81 16 36 H 0.07 1.45 8.07 -51.93 -0.42 1.03 16 37 H 0.07 1.67 6.01 -51.93 -0.31 1.35 16 38 H 0.02 0.43 6.46 -51.93 -0.34 0.10 16 39 H 0.02 0.52 6.66 -51.93 -0.35 0.18 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 329.55 15.07 4.97 4.97 Total: -1.00 -33.74 329.55 -6.52 -40.26 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.03 Total: 1.50 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 0.38 Total: 2.37 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.28 Total: -35.67 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -1.53 Total: -29.83 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.74 -6.52 -40.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598754792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.593 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds