Wall clock time and date at job start Tue Mar 31 2020 06:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 116.99960 * 2 1 4 4 O 1.20825 * 119.99951 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00167 * 179.97438 * 3 2 1 6 6 H 1.08996 * 109.46395 * 328.96841 * 5 3 2 7 7 C 1.53045 * 109.45722 * 88.87002 * 5 3 2 8 8 C 1.53125 * 109.27256 * 179.13229 * 7 5 3 9 9 H 1.08997 * 109.51950 * 62.37738 * 8 7 5 10 10 C 1.50697 * 109.52466 * 182.50661 * 8 7 5 11 11 O 1.20830 * 120.00083 * 359.59568 * 10 8 7 12 12 O 1.34224 * 120.00234 * 179.87462 * 10 8 7 13 13 C 1.53118 * 109.21229 * 302.44132 * 8 7 5 14 14 C 1.53037 * 109.27936 * 57.62408 * 13 8 7 15 15 N 1.46849 * 109.46431 * 208.98593 * 5 3 2 16 16 C 1.46896 * 110.99763 * 54.14575 * 15 5 3 17 17 C 1.52998 * 109.47046 * 58.86963 * 16 15 5 18 18 C 1.50702 * 109.47131 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00088 * 359.97438 * 18 17 16 20 20 C 1.37883 * 120.00214 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99854 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00010 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47308 * 60.00175 * 22 20 18 24 24 H 1.48500 * 109.46748 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47330 * 299.99724 * 22 20 18 26 26 H 1.09005 * 109.47345 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47573 * 300.00040 * 1 2 3 28 28 H 1.09000 * 109.47197 * 60.00433 * 1 2 3 29 29 H 1.08997 * 109.45520 * 59.22949 * 7 5 3 30 30 H 1.09000 * 109.55829 * 299.10328 * 7 5 3 31 31 H 0.96701 * 117.00362 * 179.97438 * 12 10 8 32 32 H 1.09005 * 109.50113 * 177.56201 * 13 8 7 33 33 H 1.08998 * 109.50356 * 297.68189 * 13 8 7 34 34 H 1.09001 * 109.46449 * 60.83457 * 14 13 8 35 35 H 1.09005 * 109.46414 * 180.80787 * 14 13 8 36 36 H 1.09002 * 109.46790 * 178.86929 * 16 15 5 37 37 H 1.09004 * 109.47583 * 298.87103 * 16 15 5 38 38 H 1.09002 * 109.47298 * 299.99654 * 17 16 15 39 39 H 1.08996 * 109.47560 * 59.99925 * 17 16 15 40 40 H 0.96998 * 120.00097 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9749 0.4147 0.5307 7 6 4.0774 1.2729 -1.4420 8 6 5.6053 1.3750 -1.4369 9 1 6.0269 0.5032 -0.9368 10 6 6.1107 1.4355 -2.8553 11 8 5.3305 1.3932 -3.7770 12 8 7.4279 1.5307 -3.0950 13 6 6.0229 2.6450 -0.6904 14 6 5.4554 2.6056 0.7303 15 7 3.9912 2.5101 0.6715 16 6 3.4028 2.6094 2.0137 17 6 3.8284 1.3995 2.8479 18 6 3.2251 1.5016 4.2251 19 1 2.6010 2.3453 4.4801 20 6 3.4709 0.5184 5.1601 21 7 4.2313 -0.5088 4.8497 22 14 2.7238 0.6454 6.8674 23 1 1.2430 0.6750 6.7588 24 1 3.1378 -0.5284 7.6773 25 1 3.1971 1.8906 7.5235 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.6576 2.1246 -1.9771 30 1 3.7761 0.3484 -1.9346 31 1 7.7043 1.5661 -4.0210 32 1 7.1107 2.7001 -0.6464 33 1 5.6345 3.5189 -1.2133 34 1 5.8550 1.7391 1.2572 35 1 5.7390 3.5152 1.2600 36 1 3.7497 3.5233 2.4958 37 1 2.3159 2.6310 1.9333 38 1 3.4814 0.4855 2.3657 39 1 4.9151 1.3777 2.9284 40 1 4.4039 -1.2006 5.5073 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598754792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:08 Heat of formation + Delta-G solvation = -203.676761 kcal Electronic energy + Delta-G solvation = -23812.063792 eV Core-core repulsion = 20204.701260 eV Total energy + Delta-G solvation = -3607.362532 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.10944 -41.27591 -39.65243 -37.42287 -37.11620 -35.99671 -34.47840 -32.59677 -31.09345 -28.83215 -27.62412 -25.50853 -25.28086 -23.42552 -22.74365 -21.57619 -20.40226 -19.13123 -18.75323 -18.57750 -18.01223 -17.49181 -16.96368 -16.72513 -16.48973 -16.23756 -16.06564 -15.20597 -14.98932 -14.69344 -14.27591 -14.23725 -14.07157 -13.98158 -13.66836 -13.28244 -13.03198 -12.81698 -12.66602 -12.57382 -12.50157 -12.40797 -12.16623 -12.00880 -11.83902 -11.76014 -11.57130 -11.39031 -11.34640 -11.12904 -10.54380 -9.23210 -8.21690 -6.32554 1.08629 1.19739 1.39063 1.40708 1.48833 1.60406 2.13346 2.38982 2.89065 3.11286 3.45729 3.64202 3.84668 3.89743 4.01682 4.11335 4.27414 4.30696 4.36294 4.42469 4.48778 4.57645 4.65362 4.69746 4.78704 4.82085 4.94576 4.96116 5.03087 5.24341 5.30311 5.44755 5.52572 5.62908 5.67008 5.89315 6.07063 6.27755 6.72787 6.81849 7.02572 7.36259 8.88837 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017140 B = 0.005125 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.223288 B = 5461.653324 C = 6437.233052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.368 6.368 3 C 0.471 3.529 4 O -0.515 6.515 5 C 0.096 3.904 6 H 0.074 0.926 7 C -0.081 4.081 8 C -0.079 4.079 9 H 0.127 0.873 10 C 0.501 3.499 11 O -0.547 6.547 12 O -0.504 6.504 13 C -0.095 4.095 14 C 0.054 3.946 15 N -0.523 5.523 16 C 0.063 3.937 17 C 0.003 3.997 18 C -0.545 4.545 19 H 0.053 0.947 20 C 0.010 3.990 21 N -0.925 5.925 22 Si 0.958 3.042 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.267 1.267 26 H 0.132 0.868 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.429 0.571 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.052 0.948 38 H -0.007 1.007 39 H 0.008 0.992 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 1.785 -14.234 14.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.284 6.284 3 C 0.314 3.686 4 O -0.403 6.403 5 C -0.014 4.014 6 H 0.091 0.909 7 C -0.119 4.119 8 C -0.098 4.098 9 H 0.145 0.855 10 C 0.345 3.655 11 O -0.438 6.438 12 O -0.318 6.318 13 C -0.133 4.133 14 C -0.073 4.073 15 N -0.248 5.248 16 C -0.065 4.065 17 C -0.035 4.035 18 C -0.584 4.584 19 H 0.072 0.928 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.782 3.218 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.192 1.192 26 H 0.150 0.850 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.291 0.709 32 H 0.129 0.871 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.012 0.988 39 H 0.026 0.974 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.335 2.294 -14.307 14.869 hybrid contribution -0.387 -0.804 1.021 1.356 sum 2.948 1.490 -13.286 13.691 Atomic orbital electron populations 1.23539 0.74734 1.05725 1.02385 1.86498 1.25234 1.32996 1.83697 1.23680 0.92184 0.81338 0.71434 1.90594 1.67399 1.36961 1.45344 1.21182 0.87105 0.94922 0.98202 0.90868 1.21344 0.94206 1.04478 0.91886 1.21046 0.95116 1.03548 0.90083 0.85525 1.23148 0.80306 0.70380 0.91714 1.90724 1.58096 1.47492 1.47489 1.84493 1.24614 1.84383 1.38280 1.21599 1.02584 0.95463 0.93662 1.22217 0.85135 1.02505 0.97476 1.62227 1.10302 1.33050 1.19209 1.22217 0.98672 0.99071 0.86524 1.19522 0.95941 0.93520 0.94549 1.21487 1.30967 1.07445 0.98467 0.92832 1.25826 0.95444 0.94834 1.02773 1.70050 1.38700 1.11357 1.36388 0.85615 0.78909 0.77933 0.79309 1.19713 1.20567 1.19158 0.84953 0.93000 0.90955 0.90417 0.89168 0.70902 0.87127 0.90299 0.94285 0.88745 0.90736 0.92944 0.98825 0.97368 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.56 113.37 1.20 1.99 16 2 O -0.37 -13.01 10.57 -51.40 -0.54 -13.56 16 3 C 0.47 18.02 6.02 71.24 0.43 18.45 16 4 O -0.52 -21.73 14.91 21.97 0.33 -21.40 16 5 C 0.10 3.30 1.75 44.19 0.08 3.38 16 6 H 0.07 2.73 6.62 -2.39 -0.02 2.71 16 7 C -0.08 -2.24 3.95 30.65 0.12 -2.11 16 8 C -0.08 -1.74 2.69 -11.46 -0.03 -1.77 16 9 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 10 C 0.50 10.49 7.63 71.23 0.54 11.03 16 11 O -0.55 -14.95 16.74 21.95 0.37 -14.58 16 12 O -0.50 -7.18 13.35 -51.35 -0.69 -7.87 16 13 C -0.10 -2.03 5.31 30.65 0.16 -1.87 16 14 C 0.05 1.55 5.03 86.33 0.43 1.98 16 15 N -0.52 -18.61 4.46 -875.48 -3.90 -22.51 16 16 C 0.06 2.70 4.80 86.30 0.41 3.12 16 17 C 0.00 0.15 4.28 29.85 0.13 0.28 16 18 C -0.55 -30.77 9.11 25.60 0.23 -30.54 16 19 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 20 C 0.01 0.57 5.46 84.66 0.46 1.03 16 21 N -0.93 -54.59 13.29 21.45 0.28 -54.31 16 22 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 H 0.13 2.62 8.14 -2.38 -0.02 2.60 16 27 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 28 H 0.07 1.76 8.13 -2.39 -0.02 1.74 16 29 H 0.08 2.31 8.05 -2.39 -0.02 2.29 16 30 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.43 2.38 9.10 -74.06 -0.67 1.71 16 32 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.24 6.74 -2.39 -0.02 1.23 16 35 H 0.09 2.57 8.07 -2.38 -0.02 2.55 16 36 H 0.07 3.11 8.07 -2.39 -0.02 3.09 16 37 H 0.05 2.47 6.01 -2.38 -0.01 2.46 16 38 H -0.01 -0.36 6.46 -2.39 -0.02 -0.37 16 39 H 0.01 0.43 6.66 -2.39 -0.02 0.41 16 40 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -72.97 329.55 2.43 -70.54 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.38 Total: 12.86 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 4.17 Total: 4.97 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -3.62 Total: -76.82 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -0.53 Total: -57.41 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -72.97 2.43 -70.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598754792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.133 kcal (2) G-P(sol) polarization free energy of solvation -72.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds