Wall clock time and date at job start Tue Mar 31 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 117.00043 * 2 1 4 4 O 1.20825 * 120.00043 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00041 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.45989 * 30.92179 * 5 3 2 7 7 C 1.53037 * 109.46154 * 270.95199 * 5 3 2 8 8 C 1.53125 * 109.27557 * 180.80360 * 7 5 3 9 9 H 1.09000 * 109.52157 * 297.74673 * 8 7 5 10 10 C 1.50702 * 109.57149 * 177.59176 * 8 7 5 11 11 O 1.20828 * 120.00122 * 0.28382 * 10 8 7 12 12 O 1.34224 * 119.99785 * 180.28563 * 10 8 7 13 13 C 1.53116 * 109.16244 * 57.65425 * 8 7 5 14 14 C 1.53042 * 109.27889 * 302.34724 * 13 8 7 15 15 N 1.46842 * 109.52532 * 59.17626 * 14 13 8 16 16 C 1.46900 * 111.00167 * 174.16232 * 15 14 13 17 17 C 1.53001 * 109.47093 * 288.61363 * 16 15 14 18 18 C 1.50697 * 109.47117 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99726 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99737 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00374 * 359.97438 * 20 18 17 22 22 Si 1.86811 * 119.99976 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46768 * 89.99886 * 22 20 18 24 24 H 1.48491 * 109.47108 * 209.99891 * 22 20 18 25 25 H 1.48500 * 109.46635 * 330.00022 * 22 20 18 26 26 H 1.08995 * 109.46966 * 300.00206 * 1 2 3 27 27 H 1.09003 * 109.46948 * 60.00033 * 1 2 3 28 28 H 1.08993 * 109.47192 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.50527 * 300.74604 * 7 5 3 30 30 H 1.09000 * 109.50026 * 60.86398 * 7 5 3 31 31 H 0.96703 * 116.99873 * 180.02562 * 12 10 8 32 32 H 1.08997 * 109.50406 * 182.40015 * 13 8 7 33 33 H 1.09002 * 109.49928 * 62.28362 * 13 8 7 34 34 H 1.08998 * 109.45708 * 299.15977 * 14 13 8 35 35 H 1.08998 * 109.45192 * 179.18811 * 14 13 8 36 36 H 1.08999 * 109.46721 * 48.61068 * 16 15 14 37 37 H 1.08999 * 109.46870 * 168.61457 * 16 15 14 38 38 H 1.09002 * 109.46888 * 300.00212 * 17 16 15 39 39 H 1.09007 * 109.46889 * 59.99713 * 17 16 15 40 40 H 0.96998 * 120.00101 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9749 0.4135 -0.5290 7 6 4.0774 1.2773 1.4419 8 6 5.6053 1.3777 1.4368 9 1 6.0261 0.5047 0.9378 10 6 6.1119 1.4402 2.8547 11 8 5.3323 1.4027 3.7770 12 8 7.4293 1.5376 3.0930 13 6 6.0231 2.6461 0.6877 14 6 5.4556 2.6040 -0.7330 15 7 3.9915 2.5087 -0.6740 16 6 3.4030 2.6053 -2.0165 17 6 3.5366 4.0404 -2.5298 18 6 2.9336 4.1393 -3.9073 19 1 2.4989 3.2659 -4.3704 20 6 2.9378 5.3447 -4.5767 21 7 3.4675 6.4082 -4.0128 22 14 2.1908 5.4673 -6.2845 23 1 0.7523 5.8180 -6.1716 24 1 2.8973 6.5186 -7.0594 25 1 2.3292 4.1625 -6.9800 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.6584 2.1307 1.9750 30 1 3.7750 0.3543 1.9366 31 1 7.7064 1.5743 4.0187 32 1 7.1108 2.7012 0.6437 33 1 5.6346 3.5211 1.2090 34 1 5.8552 1.7365 -1.2580 35 1 5.7392 3.5125 -1.2642 36 1 3.9256 1.9277 -2.6917 37 1 2.3488 2.3321 -1.9716 38 1 3.0142 4.7179 -1.8545 39 1 4.5910 4.3135 -2.5746 40 1 3.4708 7.2561 -4.4839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598754794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:11 Heat of formation + Delta-G solvation = -178.187461 kcal Electronic energy + Delta-G solvation = -23437.089298 eV Core-core repulsion = 19830.832065 eV Total energy + Delta-G solvation = -3606.257233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.94411 -40.25966 -38.37995 -36.34200 -36.12820 -34.36457 -32.65947 -31.49696 -29.46646 -27.78919 -26.14501 -24.23391 -23.80153 -22.16841 -20.82380 -20.16524 -19.65195 -18.25457 -17.63074 -17.00306 -16.48878 -16.19216 -15.95454 -15.75345 -14.96323 -14.76488 -14.40409 -13.92052 -13.77699 -13.69318 -13.23589 -12.94013 -12.71443 -12.53535 -12.10255 -11.99637 -11.71703 -11.52538 -11.35093 -11.29104 -11.06113 -10.88011 -10.83436 -10.64951 -10.56533 -10.37122 -10.05260 -9.75638 -9.41167 -9.10211 -8.30455 -7.91469 -5.97068 -3.99226 2.03972 2.36533 2.64927 2.95074 3.33860 3.39797 3.42418 4.12091 4.42972 4.50514 4.63456 4.80981 4.95921 5.05658 5.13800 5.16421 5.25315 5.27225 5.38988 5.45861 5.53242 5.57792 5.68947 5.74405 6.02538 6.09240 6.16091 6.26963 6.35345 6.39482 6.48240 6.94853 7.28865 7.35601 7.71799 7.74809 7.91772 8.00802 8.10712 8.44792 9.07360 9.63975 11.14331 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.004774 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.757447 B = 5864.087757 C = 7295.570677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.366 6.366 3 C 0.462 3.538 4 O -0.469 6.469 5 C 0.099 3.901 6 H 0.070 0.930 7 C -0.091 4.091 8 C -0.077 4.077 9 H 0.111 0.889 10 C 0.487 3.513 11 O -0.515 6.515 12 O -0.515 6.515 13 C -0.110 4.110 14 C 0.060 3.940 15 N -0.521 5.521 16 C 0.057 3.943 17 C 0.034 3.966 18 C -0.521 4.521 19 H 0.052 0.948 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.275 1.275 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.408 0.592 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.101 0.899 36 H 0.024 0.976 37 H 0.064 0.936 38 H 0.028 0.972 39 H 0.017 0.983 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.929 -14.066 12.092 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.302 3.698 4 O -0.352 6.352 5 C -0.011 4.011 6 H 0.088 0.912 7 C -0.129 4.129 8 C -0.096 4.096 9 H 0.128 0.872 10 C 0.329 3.671 11 O -0.402 6.402 12 O -0.326 6.326 13 C -0.148 4.148 14 C -0.067 4.067 15 N -0.247 5.247 16 C -0.069 4.069 17 C -0.003 4.003 18 C -0.560 4.560 19 H 0.070 0.930 20 C -0.142 4.142 21 N -0.531 5.531 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.200 1.200 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.267 0.733 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.120 0.880 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.046 0.954 39 H 0.035 0.965 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.198 -13.201 12.173 18.441 hybrid contribution -0.223 -0.471 -0.811 0.964 sum 3.975 -13.671 11.363 18.216 Atomic orbital electron populations 1.23231 0.76476 1.03317 1.02777 1.86476 1.23352 1.33852 1.84680 1.23409 0.91581 0.81489 0.73362 1.90742 1.66379 1.35914 1.42137 1.21123 0.87729 0.95033 0.97259 0.91248 1.21433 0.92611 1.04715 0.94160 1.21081 0.96535 1.02659 0.89330 0.87152 1.23442 0.79779 0.71279 0.92556 1.90728 1.57106 1.45750 1.46651 1.84546 1.26516 1.85209 1.36354 1.21689 1.01245 0.95741 0.96087 1.22145 0.86392 1.02819 0.95371 1.61949 1.08643 1.31855 1.22302 1.22514 0.98022 1.02013 0.84351 1.19025 0.97249 0.88889 0.95160 1.21154 1.38455 0.95199 1.01180 0.92961 1.24966 0.95468 0.95800 0.97936 1.69970 1.45102 1.00232 1.37836 0.86612 0.79343 0.77700 0.84441 1.20664 1.21209 1.19961 0.91970 0.91689 0.88357 0.89074 0.89958 0.73304 0.89814 0.90029 0.94541 0.88041 0.95795 0.91760 0.95362 0.96482 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.24 10.57 -39.25 -0.41 -5.65 16 3 C 0.46 7.75 5.82 36.01 0.21 7.96 16 4 O -0.47 -9.61 15.13 -18.75 -0.28 -9.89 16 5 C 0.10 1.47 2.34 -68.87 -0.16 1.30 16 6 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 7 C -0.09 -1.17 3.94 -26.65 -0.11 -1.27 16 8 C -0.08 -0.83 2.69 -91.65 -0.25 -1.07 16 9 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 10 C 0.49 5.35 7.63 36.01 0.27 5.63 16 11 O -0.51 -7.21 16.74 -18.75 -0.31 -7.52 16 12 O -0.51 -4.24 13.35 -39.24 -0.52 -4.76 16 13 C -0.11 -1.29 5.31 -26.65 -0.14 -1.43 16 14 C 0.06 0.88 5.30 -3.83 -0.02 0.86 16 15 N -0.52 -9.25 4.21 -228.08 -0.96 -10.21 16 16 C 0.06 1.22 4.54 -3.82 -0.02 1.20 16 17 C 0.03 0.90 5.01 -27.88 -0.14 0.76 16 18 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 22 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.36 8.05 -51.93 -0.42 0.94 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.41 1.66 9.10 45.56 0.41 2.08 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 1.69 6.47 -51.93 -0.34 1.35 16 36 H 0.02 0.49 8.06 -51.93 -0.42 0.07 16 37 H 0.06 1.46 5.69 -51.93 -0.30 1.16 16 38 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.02 0.46 6.64 -51.92 -0.34 0.11 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 333.34 15.07 5.02 5.02 Total: -1.00 -35.29 333.34 -6.62 -41.91 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -5.17 Total: -1.22 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 0.31 Total: 1.78 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.22 Total: -36.51 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -1.54 Total: -27.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.29 -6.62 -41.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598754794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.278 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds