Wall clock time and date at job start Tue Mar 31 2020 06:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 117.00043 * 2 1 4 4 O 1.20825 * 120.00043 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00041 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.45989 * 30.92179 * 5 3 2 7 7 C 1.53037 * 109.46154 * 270.95199 * 5 3 2 8 8 C 1.53125 * 109.27557 * 180.80360 * 7 5 3 9 9 H 1.09000 * 109.52157 * 297.74673 * 8 7 5 10 10 C 1.50702 * 109.57149 * 177.59176 * 8 7 5 11 11 O 1.20828 * 120.00122 * 0.28382 * 10 8 7 12 12 O 1.34224 * 119.99785 * 180.28563 * 10 8 7 13 13 C 1.53116 * 109.16244 * 57.65425 * 8 7 5 14 14 C 1.53042 * 109.27889 * 302.34724 * 13 8 7 15 15 N 1.46842 * 109.52532 * 59.17626 * 14 13 8 16 16 C 1.46900 * 111.00167 * 174.16232 * 15 14 13 17 17 C 1.53001 * 109.47093 * 288.61363 * 16 15 14 18 18 C 1.50697 * 109.47117 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99726 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99737 * 180.02562 * 18 17 16 21 21 N 1.31518 * 120.00374 * 359.97438 * 20 18 17 22 22 Si 1.86811 * 119.99976 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46768 * 89.99886 * 22 20 18 24 24 H 1.48491 * 109.47108 * 209.99891 * 22 20 18 25 25 H 1.48500 * 109.46635 * 330.00022 * 22 20 18 26 26 H 1.08995 * 109.46966 * 300.00206 * 1 2 3 27 27 H 1.09003 * 109.46948 * 60.00033 * 1 2 3 28 28 H 1.08993 * 109.47192 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.50527 * 300.74604 * 7 5 3 30 30 H 1.09000 * 109.50026 * 60.86398 * 7 5 3 31 31 H 0.96703 * 116.99873 * 180.02562 * 12 10 8 32 32 H 1.08997 * 109.50406 * 182.40015 * 13 8 7 33 33 H 1.09002 * 109.49928 * 62.28362 * 13 8 7 34 34 H 1.08998 * 109.45708 * 299.15977 * 14 13 8 35 35 H 1.08998 * 109.45192 * 179.18811 * 14 13 8 36 36 H 1.08999 * 109.46721 * 48.61068 * 16 15 14 37 37 H 1.08999 * 109.46870 * 168.61457 * 16 15 14 38 38 H 1.09002 * 109.46888 * 300.00212 * 17 16 15 39 39 H 1.09007 * 109.46889 * 59.99713 * 17 16 15 40 40 H 0.96998 * 120.00101 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9749 0.4135 -0.5290 7 6 4.0774 1.2773 1.4419 8 6 5.6053 1.3777 1.4368 9 1 6.0261 0.5047 0.9378 10 6 6.1119 1.4402 2.8547 11 8 5.3323 1.4027 3.7770 12 8 7.4293 1.5376 3.0930 13 6 6.0231 2.6461 0.6877 14 6 5.4556 2.6040 -0.7330 15 7 3.9915 2.5087 -0.6740 16 6 3.4030 2.6053 -2.0165 17 6 3.5366 4.0404 -2.5298 18 6 2.9336 4.1393 -3.9073 19 1 2.4989 3.2659 -4.3704 20 6 2.9378 5.3447 -4.5767 21 7 3.4675 6.4082 -4.0128 22 14 2.1908 5.4673 -6.2845 23 1 0.7523 5.8180 -6.1716 24 1 2.8973 6.5186 -7.0594 25 1 2.3292 4.1625 -6.9800 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.6584 2.1307 1.9750 30 1 3.7750 0.3543 1.9366 31 1 7.7064 1.5743 4.0187 32 1 7.1108 2.7012 0.6437 33 1 5.6346 3.5211 1.2090 34 1 5.8552 1.7365 -1.2580 35 1 5.7392 3.5125 -1.2642 36 1 3.9256 1.9277 -2.6917 37 1 2.3488 2.3321 -1.9716 38 1 3.0142 4.7179 -1.8545 39 1 4.5910 4.3135 -2.5746 40 1 3.4708 7.2561 -4.4839 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598754794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:11 Heat of formation + Delta-G solvation = -203.887568 kcal Electronic energy + Delta-G solvation = -23438.203738 eV Core-core repulsion = 19830.832065 eV Total energy + Delta-G solvation = -3607.371673 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = -0.07 seconds Orbital eigenvalues (eV) -42.07292 -41.27833 -39.56027 -37.44518 -37.10832 -35.97540 -34.49533 -32.68783 -31.23918 -28.83310 -27.59153 -25.59673 -25.29004 -23.31854 -22.28198 -21.51327 -20.76832 -19.14402 -18.81697 -18.57764 -17.96253 -17.47127 -17.05406 -16.71805 -16.54327 -16.25804 -15.88104 -15.25094 -14.90961 -14.71538 -14.45426 -14.26921 -14.11263 -13.97541 -13.60829 -13.24936 -13.06180 -12.90566 -12.69674 -12.53198 -12.42990 -12.38955 -12.15000 -11.98777 -11.77378 -11.68495 -11.58954 -11.35024 -11.19713 -11.13973 -10.53156 -9.27489 -8.19581 -6.30860 1.08689 1.20509 1.39102 1.41290 1.51837 1.55737 2.14128 2.39528 2.84760 3.13811 3.45549 3.65231 3.82962 3.87516 3.98954 4.07770 4.30243 4.30993 4.34613 4.36052 4.46081 4.52092 4.65127 4.68399 4.74254 4.84756 4.98142 5.02010 5.07513 5.23530 5.30475 5.43175 5.63228 5.65572 5.74955 6.04343 6.10815 6.28853 6.74571 6.85546 7.02410 7.37800 8.92634 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015907 B = 0.004774 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.757447 B = 5864.087757 C = 7295.570677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.461 3.539 4 O -0.518 6.518 5 C 0.100 3.900 6 H 0.102 0.898 7 C -0.084 4.084 8 C -0.071 4.071 9 H 0.147 0.853 10 C 0.497 3.503 11 O -0.550 6.550 12 O -0.505 6.505 13 C -0.100 4.100 14 C 0.059 3.941 15 N -0.544 5.544 16 C 0.077 3.923 17 C 0.044 3.956 18 C -0.545 4.545 19 H 0.057 0.943 20 C 0.003 3.997 21 N -0.930 5.930 22 Si 0.965 3.035 23 H -0.277 1.277 24 H -0.278 1.278 25 H -0.260 1.260 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.140 0.860 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.428 0.572 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.047 0.953 38 H -0.018 1.018 39 H 0.004 0.996 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.997 -16.502 11.714 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.303 3.697 4 O -0.405 6.405 5 C -0.009 4.009 6 H 0.120 0.880 7 C -0.122 4.122 8 C -0.090 4.090 9 H 0.164 0.836 10 C 0.341 3.659 11 O -0.441 6.441 12 O -0.318 6.318 13 C -0.138 4.138 14 C -0.068 4.068 15 N -0.271 5.271 16 C -0.050 4.050 17 C 0.006 3.994 18 C -0.583 4.583 19 H 0.075 0.925 20 C -0.195 4.195 21 N -0.570 5.570 22 Si 0.789 3.211 23 H -0.202 1.202 24 H -0.204 1.204 25 H -0.184 1.184 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.158 0.842 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.290 0.710 32 H 0.130 0.870 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.000 1.000 39 H 0.022 0.978 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.303 -15.674 11.817 20.333 hybrid contribution -0.546 0.275 -0.619 0.870 sum 4.757 -15.398 11.198 19.625 Atomic orbital electron populations 1.23550 0.74878 1.05875 1.02207 1.86470 1.24921 1.32317 1.83914 1.23911 0.92475 0.81426 0.71904 1.90725 1.67547 1.37611 1.44619 1.21264 0.86640 0.94555 0.98466 0.88017 1.21361 0.94219 1.04375 0.92269 1.21042 0.94999 1.03321 0.89664 0.83563 1.23307 0.80266 0.70345 0.92025 1.90732 1.58167 1.47572 1.47629 1.84489 1.24710 1.84365 1.38278 1.21591 1.02566 0.95659 0.93941 1.22178 0.84598 1.02572 0.97408 1.61725 1.10577 1.34579 1.20216 1.22029 0.97608 0.98621 0.86702 1.18815 0.95446 0.91318 0.93776 1.21585 1.38753 0.95692 1.02283 0.92512 1.25935 0.95740 0.95298 1.02503 1.70109 1.46233 1.00883 1.39797 0.85457 0.78302 0.78376 0.78963 1.20247 1.20374 1.18446 0.92004 0.92933 0.84169 0.91974 0.88128 0.70983 0.87020 0.92185 0.91842 0.90906 0.94520 0.93462 0.99972 0.97750 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -9.83 10.57 -51.37 -0.54 -10.37 16 3 C 0.46 15.45 5.82 71.24 0.41 15.86 16 4 O -0.52 -22.15 15.13 21.97 0.33 -21.81 16 5 C 0.10 2.85 2.34 44.19 0.10 2.96 16 6 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 7 C -0.08 -2.03 3.94 30.65 0.12 -1.91 16 8 C -0.07 -1.34 2.69 -11.46 -0.03 -1.37 16 9 H 0.15 1.78 8.14 -2.39 -0.02 1.76 16 10 C 0.50 9.68 7.63 71.24 0.54 10.22 16 11 O -0.55 -14.64 16.74 21.96 0.37 -14.27 16 12 O -0.51 -6.64 13.35 -51.36 -0.69 -7.32 16 13 C -0.10 -2.18 5.31 30.65 0.16 -2.02 16 14 C 0.06 1.69 5.30 86.33 0.46 2.15 16 15 N -0.54 -19.47 4.21 -875.50 -3.69 -23.16 16 16 C 0.08 3.38 4.54 86.30 0.39 3.78 16 17 C 0.04 2.42 5.01 29.85 0.15 2.57 16 18 C -0.54 -31.99 9.11 25.60 0.23 -31.75 16 19 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 20 C 0.00 0.19 5.46 84.65 0.46 0.66 16 21 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 22 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 25 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 26 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 27 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 28 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.88 8.05 -2.39 -0.02 1.86 16 30 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.43 2.15 9.10 -74.06 -0.67 1.48 16 32 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.07 2.49 6.47 -2.39 -0.02 2.48 16 36 H 0.04 1.48 8.06 -2.39 -0.02 1.46 16 37 H 0.05 2.21 5.69 -2.39 -0.01 2.20 16 38 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 39 H 0.00 0.24 6.64 -2.38 -0.02 0.22 16 40 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -80.18 333.34 2.68 -77.50 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.38 Total: 7.00 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 4.21 Total: 2.94 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -3.40 Total: -80.78 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -0.53 Total: -53.78 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -80.18 2.68 -77.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598754794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.386 kcal (2) G-P(sol) polarization free energy of solvation -80.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.07 seconds