Wall clock time and date at job start Tue Mar 31 2020 06:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99883 * 2 1 4 4 H 1.09002 * 109.47156 * 30.00551 * 3 2 1 5 5 C 1.50701 * 109.46830 * 150.00280 * 3 2 1 6 6 O 1.21293 * 120.00409 * 23.95572 * 5 3 2 7 7 N 1.34780 * 119.99788 * 203.95374 * 5 3 2 8 8 C 1.37094 * 120.00388 * 355.40077 * 7 5 3 9 9 H 1.07999 * 120.00013 * 35.90367 * 8 7 5 10 10 C 1.38948 * 119.99964 * 215.63678 * 8 7 5 11 11 N 1.31410 * 120.00277 * 20.18390 * 10 8 7 12 12 Si 1.86801 * 120.00076 * 200.18023 * 10 8 7 13 13 H 1.48497 * 109.46952 * 89.99585 * 12 10 8 14 14 H 1.48493 * 109.47487 * 210.00167 * 12 10 8 15 15 H 1.48506 * 109.46957 * 329.99979 * 12 10 8 16 16 C 1.46504 * 119.99543 * 175.39968 * 7 5 3 17 17 C 1.53000 * 109.47014 * 272.56159 * 16 7 5 18 18 C 1.50700 * 109.47266 * 180.02562 * 17 16 7 19 19 O 1.20825 * 119.99984 * 0.02562 * 18 17 16 20 20 O 1.34230 * 120.00235 * 180.02562 * 18 17 16 21 21 C 1.52995 * 109.47531 * 270.00459 * 3 2 1 22 22 C 1.53783 * 113.61609 * 158.16803 * 21 3 2 23 23 C 1.53957 * 87.01808 * 220.04757 * 22 21 3 24 24 C 1.53784 * 113.61419 * 60.55695 * 21 3 2 25 25 H 1.08995 * 109.47455 * 180.02562 * 1 2 3 26 26 H 1.09012 * 109.46855 * 299.99447 * 1 2 3 27 27 H 1.08997 * 109.47704 * 59.99257 * 1 2 3 28 28 H 0.97003 * 120.00316 * 180.02562 * 11 10 8 29 29 H 1.08999 * 109.47365 * 32.56502 * 16 7 5 30 30 H 1.09004 * 109.46942 * 152.56315 * 16 7 5 31 31 H 1.08999 * 109.47334 * 300.00362 * 17 16 7 32 32 H 1.09004 * 109.47139 * 60.00276 * 17 16 7 33 33 H 0.96703 * 117.00149 * 179.97438 * 20 18 17 34 34 H 1.08999 * 112.84744 * 289.36448 * 21 3 2 35 35 H 1.08994 * 113.61357 * 334.56642 * 22 21 3 36 36 H 1.08997 * 113.61558 * 105.46915 * 22 21 3 37 37 H 1.08993 * 113.53829 * 270.81199 * 23 22 21 38 38 H 1.09000 * 113.74409 * 139.94044 * 23 22 21 39 39 H 1.08997 * 113.61766 * 254.52937 * 24 21 3 40 40 H 1.08996 * 113.61126 * 25.43388 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3386 1.2639 0.7104 6 8 3.9531 0.2209 0.7869 7 7 3.8439 2.3856 1.2607 8 6 3.1969 3.5827 1.0937 9 1 2.1176 3.6150 1.0735 10 6 3.9297 4.7552 0.9559 11 7 5.1909 4.7027 0.5905 12 14 3.1221 6.4061 1.2899 13 1 3.2937 6.7603 2.7218 14 1 3.7562 7.4479 0.4428 15 1 1.6742 6.3224 0.9708 16 6 5.0847 2.3257 2.0374 17 6 4.7581 1.9967 3.4955 18 6 6.0343 1.9356 4.2947 19 8 7.0961 2.1352 3.7536 20 8 5.9915 1.6594 5.6076 21 6 2.2175 1.7715 -1.4424 22 6 2.3239 3.2988 -1.5871 23 6 1.4769 3.1561 -2.8648 24 6 0.9144 1.8617 -2.2540 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 5.7026 5.5212 0.4947 29 1 5.7334 1.5519 1.6268 30 1 5.5917 3.2893 1.9871 31 1 4.1094 2.7704 3.9061 32 1 4.2511 1.0331 3.5458 33 1 6.8360 1.6308 6.0779 34 1 3.0129 1.2282 -1.9525 35 1 1.8231 3.8488 -0.7904 36 1 3.3390 3.6503 -1.7721 37 1 2.0702 2.9926 -3.7643 38 1 0.7308 3.9414 -2.9868 39 1 0.7933 1.0547 -2.9766 40 1 0.0276 2.0180 -1.6399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599024473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:03 Heat of formation + Delta-G solvation = -142.969772 kcal Electronic energy + Delta-G solvation = -24184.381208 eV Core-core repulsion = 20579.651129 eV Total energy + Delta-G solvation = -3604.730079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.89216 -39.52663 -37.67769 -36.38838 -35.76529 -34.85164 -31.98529 -30.88104 -28.71086 -26.02302 -25.57076 -24.69088 -24.19195 -22.33954 -20.45994 -19.20932 -18.97726 -17.80010 -17.10661 -16.52801 -16.01014 -15.64729 -15.50657 -15.27647 -14.71337 -14.59449 -14.15025 -13.64958 -13.56551 -13.02532 -12.70149 -12.55582 -12.43786 -11.95634 -11.82460 -11.54392 -11.30718 -11.24911 -11.17843 -11.13386 -10.97150 -10.61653 -10.47513 -10.35111 -10.14010 -10.08497 -9.79572 -9.70275 -9.17236 -8.95547 -8.25773 -7.63108 -6.42835 -4.14544 2.67598 3.04684 3.15105 3.17305 3.37986 3.79125 3.94736 4.17029 4.84602 4.93069 5.14489 5.23527 5.34309 5.53850 5.59255 5.64869 5.68501 5.78770 5.80785 5.90634 5.96810 6.01913 6.14715 6.20541 6.26732 6.33909 6.36017 6.45085 6.74883 6.82134 6.87902 7.01776 7.09473 7.27504 7.42213 7.67425 7.81068 8.25623 8.31877 8.98829 9.40870 9.83454 10.57593 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013771 B = 0.007293 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.711402 B = 3838.408611 C = 5201.092554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.367 6.367 3 C 0.099 3.901 4 H 0.077 0.923 5 C 0.480 3.520 6 O -0.584 6.584 7 N -0.437 5.437 8 C -0.343 4.343 9 H 0.092 0.908 10 C 0.049 3.951 11 N -0.849 5.849 12 Si 0.905 3.095 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.268 1.268 16 C 0.125 3.875 17 C -0.125 4.125 18 C 0.483 3.517 19 O -0.513 6.513 20 O -0.525 6.525 21 C -0.111 4.111 22 C -0.108 4.108 23 C -0.152 4.152 24 C -0.136 4.136 25 H 0.079 0.921 26 H 0.035 0.965 27 H 0.046 0.954 28 H 0.272 0.728 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.401 0.599 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.158 -0.526 1.364 7.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.284 6.284 3 C 0.039 3.961 4 H 0.095 0.905 5 C 0.267 3.733 6 O -0.467 6.467 7 N -0.157 5.157 8 C -0.471 4.471 9 H 0.109 0.891 10 C -0.158 4.158 11 N -0.485 5.485 12 Si 0.732 3.268 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.192 1.192 16 C 0.001 3.999 17 C -0.164 4.164 18 C 0.325 3.675 19 O -0.401 6.401 20 O -0.337 6.337 21 C -0.131 4.131 22 C -0.146 4.146 23 C -0.189 4.189 24 C -0.173 4.173 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.139 0.861 31 H 0.122 0.878 32 H 0.114 0.886 33 H 0.259 0.741 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.646 -1.001 0.981 6.792 hybrid contribution 0.007 1.134 0.547 1.259 sum -6.639 0.133 1.528 6.813 Atomic orbital electron populations 1.22945 0.82386 1.02091 0.99948 1.87976 1.18250 1.27239 1.94968 1.21836 0.94430 0.84215 0.95658 0.90525 1.20229 0.87731 0.84736 0.80559 1.90553 1.62017 1.31851 1.62301 1.43299 1.22614 1.06367 1.43387 1.19343 0.91769 0.83232 1.52739 0.89105 1.25265 0.95729 0.99456 0.95362 1.69880 1.08784 1.29270 1.40544 0.86281 0.79661 0.82206 0.78696 1.20252 1.20798 1.19219 1.21218 0.87872 1.05583 0.85189 1.21872 0.92530 1.04874 0.97149 1.23771 0.92345 0.71502 0.79848 1.90704 1.32801 1.45531 1.71058 1.84591 1.41236 1.83590 1.24245 1.22741 0.97930 0.98193 0.94201 1.22971 1.01151 0.94513 0.95919 1.22977 0.99897 0.97383 0.98693 1.22983 0.97266 0.97895 0.99163 0.90288 0.94595 0.93520 0.91781 0.91681 0.86124 0.87774 0.88593 0.74147 0.89396 0.88748 0.90612 0.90980 0.92145 0.92066 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.58 101.05 1.07 1.40 16 2 O -0.37 -7.28 9.95 -53.89 -0.54 -7.82 16 3 C 0.10 2.01 1.96 -27.88 -0.05 1.95 16 4 H 0.08 1.46 5.99 -51.93 -0.31 1.15 16 5 C 0.48 11.59 6.85 -10.98 -0.08 11.51 16 6 O -0.58 -15.96 16.26 -13.11 -0.21 -16.17 16 7 N -0.44 -10.34 2.54 -114.81 -0.29 -10.64 16 8 C -0.34 -7.78 5.92 -14.94 -0.09 -7.86 16 9 H 0.09 1.95 5.37 -52.49 -0.28 1.67 16 10 C 0.05 1.13 4.97 -17.47 -0.09 1.04 16 11 N -0.85 -21.11 11.28 55.50 0.63 -20.49 16 12 Si 0.91 18.03 29.60 -169.99 -5.03 13.00 16 13 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 14 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 15 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 16 C 0.13 2.95 4.28 -4.04 -0.02 2.93 16 17 C -0.13 -2.45 6.12 -27.88 -0.17 -2.62 16 18 C 0.48 8.91 8.33 36.01 0.30 9.21 16 19 O -0.51 -11.00 16.74 -18.75 -0.31 -11.32 16 20 O -0.52 -7.55 13.42 -39.26 -0.53 -8.08 16 21 C -0.11 -2.08 3.33 -89.81 -0.30 -2.38 16 22 C -0.11 -1.97 5.82 -25.82 -0.15 -2.12 16 23 C -0.15 -2.25 8.09 -25.82 -0.21 -2.46 16 24 C -0.14 -2.01 6.17 -25.92 -0.16 -2.17 16 25 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.04 0.47 8.09 -51.92 -0.42 0.06 16 27 H 0.05 0.59 4.98 -51.93 -0.26 0.34 16 28 H 0.27 6.48 8.31 -40.82 -0.34 6.15 16 29 H 0.06 1.67 7.40 -51.93 -0.38 1.29 16 30 H 0.12 3.05 5.31 -51.93 -0.28 2.78 16 31 H 0.10 1.91 8.14 -51.93 -0.42 1.49 16 32 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 33 H 0.40 3.82 9.10 45.56 0.41 4.23 16 34 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 35 H 0.09 1.75 5.83 -51.93 -0.30 1.45 16 36 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.05 6.39 -51.93 -0.33 0.72 16 LS Contribution 325.42 15.07 4.90 4.90 Total: -1.00 -30.20 325.42 -5.99 -36.19 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -4.67 Total: 11.98 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 0.06 Total: 8.43 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: 0.33 Total: -31.12 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -1.59 Total: -43.39 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.20 -5.99 -36.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599024473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.776 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds