Wall clock time and date at job start Tue Mar 31 2020 06:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99883 * 2 1 4 4 H 1.09002 * 109.47156 * 30.00551 * 3 2 1 5 5 C 1.50701 * 109.46830 * 150.00280 * 3 2 1 6 6 O 1.21293 * 120.00409 * 23.95572 * 5 3 2 7 7 N 1.34780 * 119.99788 * 203.95374 * 5 3 2 8 8 C 1.37094 * 120.00388 * 355.40077 * 7 5 3 9 9 H 1.07999 * 120.00013 * 35.90367 * 8 7 5 10 10 C 1.38948 * 119.99964 * 215.63678 * 8 7 5 11 11 N 1.31410 * 120.00277 * 20.18390 * 10 8 7 12 12 Si 1.86801 * 120.00076 * 200.18023 * 10 8 7 13 13 H 1.48497 * 109.46952 * 89.99585 * 12 10 8 14 14 H 1.48493 * 109.47487 * 210.00167 * 12 10 8 15 15 H 1.48506 * 109.46957 * 329.99979 * 12 10 8 16 16 C 1.46504 * 119.99543 * 175.39968 * 7 5 3 17 17 C 1.53000 * 109.47014 * 272.56159 * 16 7 5 18 18 C 1.50700 * 109.47266 * 180.02562 * 17 16 7 19 19 O 1.20825 * 119.99984 * 0.02562 * 18 17 16 20 20 O 1.34230 * 120.00235 * 180.02562 * 18 17 16 21 21 C 1.52995 * 109.47531 * 270.00459 * 3 2 1 22 22 C 1.53783 * 113.61609 * 158.16803 * 21 3 2 23 23 C 1.53957 * 87.01808 * 220.04757 * 22 21 3 24 24 C 1.53784 * 113.61419 * 60.55695 * 21 3 2 25 25 H 1.08995 * 109.47455 * 180.02562 * 1 2 3 26 26 H 1.09012 * 109.46855 * 299.99447 * 1 2 3 27 27 H 1.08997 * 109.47704 * 59.99257 * 1 2 3 28 28 H 0.97003 * 120.00316 * 180.02562 * 11 10 8 29 29 H 1.08999 * 109.47365 * 32.56502 * 16 7 5 30 30 H 1.09004 * 109.46942 * 152.56315 * 16 7 5 31 31 H 1.08999 * 109.47334 * 300.00362 * 17 16 7 32 32 H 1.09004 * 109.47139 * 60.00276 * 17 16 7 33 33 H 0.96703 * 117.00149 * 179.97438 * 20 18 17 34 34 H 1.08999 * 112.84744 * 289.36448 * 21 3 2 35 35 H 1.08994 * 113.61357 * 334.56642 * 22 21 3 36 36 H 1.08997 * 113.61558 * 105.46915 * 22 21 3 37 37 H 1.08993 * 113.53829 * 270.81199 * 23 22 21 38 38 H 1.09000 * 113.74409 * 139.94044 * 23 22 21 39 39 H 1.08997 * 113.61766 * 254.52937 * 24 21 3 40 40 H 1.08996 * 113.61126 * 25.43388 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 3.3386 1.2639 0.7104 6 8 3.9531 0.2209 0.7869 7 7 3.8439 2.3856 1.2607 8 6 3.1969 3.5827 1.0937 9 1 2.1176 3.6150 1.0735 10 6 3.9297 4.7552 0.9559 11 7 5.1909 4.7027 0.5905 12 14 3.1221 6.4061 1.2899 13 1 3.2937 6.7603 2.7218 14 1 3.7562 7.4479 0.4428 15 1 1.6742 6.3224 0.9708 16 6 5.0847 2.3257 2.0374 17 6 4.7581 1.9967 3.4955 18 6 6.0343 1.9356 4.2947 19 8 7.0961 2.1352 3.7536 20 8 5.9915 1.6594 5.6076 21 6 2.2175 1.7715 -1.4424 22 6 2.3239 3.2988 -1.5871 23 6 1.4769 3.1561 -2.8648 24 6 0.9144 1.8617 -2.2540 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 5.7026 5.5212 0.4947 29 1 5.7334 1.5519 1.6268 30 1 5.5917 3.2893 1.9871 31 1 4.1094 2.7704 3.9061 32 1 4.2511 1.0331 3.5458 33 1 6.8360 1.6308 6.0779 34 1 3.0129 1.2282 -1.9525 35 1 1.8231 3.8488 -0.7904 36 1 3.3390 3.6503 -1.7721 37 1 2.0702 2.9926 -3.7643 38 1 0.7308 3.9414 -2.9868 39 1 0.7933 1.0547 -2.9766 40 1 0.0276 2.0180 -1.6399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599024473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:02 Heat of formation + Delta-G solvation = -162.797883 kcal Electronic energy + Delta-G solvation = -24185.241020 eV Core-core repulsion = 20579.651129 eV Total energy + Delta-G solvation = -3605.589891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.46704 -41.05049 -39.31451 -37.81824 -37.18925 -36.68745 -33.78348 -32.62226 -30.18599 -27.28733 -27.23678 -26.14459 -25.81214 -23.82608 -21.99420 -21.03846 -20.34962 -19.33003 -18.75060 -18.14390 -17.55754 -17.18470 -16.89574 -16.88168 -16.29251 -16.16772 -15.71743 -15.23491 -15.11739 -14.40291 -14.31295 -14.11725 -14.00576 -13.52125 -13.27644 -13.00843 -12.84763 -12.76358 -12.72153 -12.57769 -12.55553 -12.14311 -12.03210 -11.91634 -11.70260 -11.65370 -11.26365 -11.12901 -10.79950 -10.54557 -9.97125 -9.51090 -8.22829 -5.99884 1.17407 1.45661 1.53565 1.62311 1.85478 2.04411 2.36943 2.61610 3.10215 3.39096 3.82532 3.90153 3.97029 4.00881 4.10284 4.12999 4.25153 4.44141 4.52191 4.54019 4.63529 4.71845 4.74240 4.84408 4.94300 4.97137 5.03010 5.05651 5.15708 5.36642 5.39920 5.49350 5.54814 5.58981 5.73329 5.97441 6.28429 6.45044 6.98779 7.16234 7.55963 7.99277 8.79088 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013771 B = 0.007293 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.711402 B = 3838.408611 C = 5201.092554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.397 6.397 3 C 0.111 3.889 4 H 0.092 0.908 5 C 0.460 3.540 6 O -0.629 6.629 7 N -0.440 5.440 8 C -0.343 4.343 9 H 0.109 0.891 10 C 0.014 3.986 11 N -0.888 5.888 12 Si 0.967 3.033 13 H -0.277 1.277 14 H -0.291 1.291 15 H -0.245 1.245 16 C 0.128 3.872 17 C -0.116 4.116 18 C 0.495 3.505 19 O -0.550 6.550 20 O -0.507 6.507 21 C -0.123 4.123 22 C -0.111 4.111 23 C -0.137 4.137 24 C -0.117 4.117 25 H 0.098 0.902 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.270 0.730 29 H 0.028 0.972 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.098 0.902 33 H 0.427 0.573 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.250 0.417 1.795 10.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.316 6.316 3 C 0.051 3.949 4 H 0.109 0.891 5 C 0.250 3.750 6 O -0.516 6.516 7 N -0.159 5.159 8 C -0.470 4.470 9 H 0.127 0.873 10 C -0.190 4.190 11 N -0.525 5.525 12 Si 0.791 3.209 13 H -0.202 1.202 14 H -0.217 1.217 15 H -0.169 1.169 16 C 0.004 3.996 17 C -0.155 4.155 18 C 0.338 3.662 19 O -0.440 6.440 20 O -0.320 6.320 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.174 4.174 24 C -0.154 4.154 25 H 0.116 0.884 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.121 0.879 31 H 0.140 0.860 32 H 0.116 0.884 33 H 0.288 0.712 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.768 -0.057 1.448 9.875 hybrid contribution 1.029 0.778 0.466 1.371 sum -8.739 0.721 1.914 8.975 Atomic orbital electron populations 1.23257 0.79387 1.04012 1.01499 1.87939 1.21532 1.26975 1.95173 1.21685 0.92312 0.85007 0.95937 0.89057 1.21128 0.89377 0.84156 0.80371 1.90504 1.63706 1.33373 1.64041 1.43550 1.22274 1.06957 1.43075 1.19690 0.92483 0.82692 1.52158 0.87332 1.26014 0.95863 1.02458 0.94663 1.70017 1.10518 1.29935 1.42035 0.85321 0.79836 0.77740 0.78051 1.20245 1.21749 1.16859 1.21003 0.87693 1.03228 0.87685 1.21618 0.93543 1.05429 0.94921 1.23367 0.91121 0.70783 0.80907 1.90705 1.33809 1.47369 1.72146 1.84502 1.43085 1.82442 1.21991 1.22769 0.99764 0.97984 0.93723 1.22897 0.99767 0.93929 0.98235 1.22909 0.99495 0.98109 0.96921 1.22940 0.95665 0.98195 0.98573 0.88359 0.93364 0.91491 0.92070 0.95317 0.87909 0.86039 0.88409 0.71161 0.92500 0.88750 0.94384 0.90641 0.89547 0.90687 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.36 10.58 113.37 1.20 1.56 16 2 O -0.40 -15.44 9.95 -131.14 -1.30 -16.75 16 3 C 0.11 4.45 1.96 29.85 0.06 4.51 16 4 H 0.09 3.31 5.99 -2.39 -0.01 3.30 16 5 C 0.46 22.93 6.85 87.66 0.60 23.54 16 6 O -0.63 -36.12 16.26 14.77 0.24 -35.88 16 7 N -0.44 -21.42 2.54 -635.52 -1.61 -23.03 16 8 C -0.34 -15.49 5.92 84.04 0.50 -14.99 16 9 H 0.11 4.46 5.37 -2.91 -0.02 4.44 16 10 C 0.01 0.63 4.97 84.93 0.42 1.05 16 11 N -0.89 -45.59 11.28 21.66 0.24 -45.34 16 12 Si 0.97 36.05 29.60 68.60 2.03 38.08 16 13 H -0.28 -10.31 7.11 99.48 0.71 -9.60 16 14 H -0.29 -11.26 7.11 99.48 0.71 -10.55 16 15 H -0.25 -8.24 7.11 99.48 0.71 -7.54 16 16 C 0.13 6.31 4.28 86.38 0.37 6.68 16 17 C -0.12 -4.60 6.12 29.85 0.18 -4.42 16 18 C 0.49 18.16 8.33 71.24 0.59 18.75 16 19 O -0.55 -24.09 16.74 21.97 0.37 -23.72 16 20 O -0.51 -13.56 13.42 -51.41 -0.69 -14.25 16 21 C -0.12 -4.54 3.33 -10.27 -0.03 -4.58 16 22 C -0.11 -3.95 5.82 31.18 0.18 -3.77 16 23 C -0.14 -3.67 8.09 31.18 0.25 -3.42 16 24 C -0.12 -3.09 6.17 31.12 0.19 -2.89 16 25 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.05 1.12 8.09 -2.38 -0.02 1.10 16 27 H 0.07 1.43 4.98 -2.39 -0.01 1.42 16 28 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 29 H 0.03 1.58 7.40 -2.39 -0.02 1.56 16 30 H 0.10 5.46 5.31 -2.38 -0.01 5.45 16 31 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 32 H 0.10 3.84 8.14 -2.38 -0.02 3.82 16 33 H 0.43 7.08 9.10 -74.06 -0.67 6.40 16 34 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.09 3.33 5.83 -2.39 -0.01 3.32 16 36 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.10 2.22 6.39 -2.39 -0.02 2.21 16 Total: -1.00 -69.10 325.42 4.19 -64.91 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.40 Total: 33.96 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: 4.51 Total: 22.03 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -1.37 Total: -68.38 kcal Atomic # 8 Polarization: -89.22 SS G_CDS: -1.39 Total: -90.60 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Total: -69.10 4.19 -64.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599024473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.885 kcal (2) G-P(sol) polarization free energy of solvation -69.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds