Wall clock time and date at job start Tue Mar 31 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99521 * 2 1 4 4 H 1.08998 * 109.47211 * 30.00224 * 3 2 1 5 5 C 1.50703 * 109.47020 * 269.99574 * 3 2 1 6 6 O 1.21292 * 119.99962 * 355.00978 * 5 3 2 7 7 N 1.34773 * 119.99695 * 174.72483 * 5 3 2 8 8 C 1.37101 * 120.00485 * 0.27951 * 7 5 3 9 9 H 1.08004 * 119.99412 * 325.57855 * 8 7 5 10 10 C 1.38943 * 120.00043 * 145.57133 * 8 7 5 11 11 N 1.31410 * 120.00528 * 338.44151 * 10 8 7 12 12 Si 1.86804 * 119.99939 * 158.43878 * 10 8 7 13 13 H 1.48498 * 109.46993 * 89.99918 * 12 10 8 14 14 H 1.48498 * 109.47423 * 210.00501 * 12 10 8 15 15 H 1.48503 * 109.46943 * 330.00383 * 12 10 8 16 16 C 1.46499 * 119.99641 * 180.27921 * 7 5 3 17 17 C 1.52996 * 109.47246 * 85.78762 * 16 7 5 18 18 C 1.50706 * 109.47257 * 180.02562 * 17 16 7 19 19 O 1.20823 * 119.99506 * 359.97438 * 18 17 16 20 20 O 1.34228 * 120.00080 * 179.97438 * 18 17 16 21 21 C 1.53004 * 109.47020 * 149.99893 * 3 2 1 22 22 C 1.53784 * 113.61206 * 37.49407 * 21 3 2 23 23 C 1.53785 * 87.08158 * 220.01823 * 22 21 3 24 24 C 1.53778 * 113.61265 * 300.00054 * 21 3 2 25 25 H 1.09000 * 109.47612 * 299.99822 * 1 2 3 26 26 H 1.08990 * 109.47243 * 60.00036 * 1 2 3 27 27 H 1.08999 * 109.47267 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00682 * 179.97438 * 11 10 8 29 29 H 1.09002 * 109.46871 * 205.78486 * 16 7 5 30 30 H 1.08993 * 109.47324 * 325.78100 * 16 7 5 31 31 H 1.09002 * 109.46960 * 299.99670 * 17 16 7 32 32 H 1.08993 * 109.47500 * 59.99445 * 17 16 7 33 33 H 0.96692 * 116.99945 * 179.97438 * 20 18 17 34 34 H 1.08993 * 112.85207 * 168.79951 * 21 3 2 35 35 H 1.08997 * 113.61729 * 334.56977 * 22 21 3 36 36 H 1.08998 * 113.61428 * 105.46963 * 22 21 3 37 37 H 1.08996 * 113.61405 * 270.88399 * 23 22 21 38 38 H 1.09001 * 113.68610 * 139.99395 * 23 22 21 39 39 H 1.09007 * 113.61138 * 254.52235 * 24 21 3 40 40 H 1.09000 * 113.61914 * 25.42879 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 1.9790 1.0105 -2.3414 7 7 2.6534 3.0143 -1.6687 8 6 2.9195 3.8665 -0.6282 9 1 2.3210 3.8254 0.2699 10 6 3.9591 4.7827 -0.7291 11 7 4.9343 4.5785 -1.5859 12 14 3.9706 6.3052 0.3533 13 1 4.6870 6.0070 1.6194 14 1 4.6601 7.4123 -0.3568 15 1 2.5736 6.7066 0.6578 16 6 2.8463 3.4624 -3.0501 17 6 1.5225 3.9935 -3.6035 18 6 1.7207 4.4538 -5.0248 19 8 2.8092 4.3665 -5.5418 20 8 0.6879 4.9608 -5.7163 21 6 3.3588 1.2634 0.7213 22 6 4.1598 -0.0222 0.4552 23 6 4.5529 0.0088 1.9417 24 6 3.2600 0.8050 2.1858 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 5.6599 5.2183 -1.6566 29 1 3.5941 4.2550 -3.0739 30 1 3.1851 2.6248 -3.6598 31 1 0.7746 3.2008 -3.5797 32 1 1.1836 4.8310 -2.9938 33 1 0.8639 5.2430 -6.6242 34 1 3.9390 2.1764 0.5877 35 1 3.5382 -0.8760 0.1856 36 1 5.0018 0.1203 -0.2221 37 1 5.4606 0.5780 2.1415 38 1 4.5565 -0.9735 2.4142 39 1 3.3758 1.6154 2.9057 40 1 2.3925 0.1774 2.3894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599024474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:05 Heat of formation + Delta-G solvation = -150.155061 kcal Electronic energy + Delta-G solvation = -24099.656428 eV Core-core repulsion = 20494.614771 eV Total energy + Delta-G solvation = -3605.041657 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.89119 -39.46381 -37.62561 -36.36017 -35.76464 -34.79570 -31.99815 -30.94721 -28.66384 -25.87534 -25.23022 -25.00359 -24.12080 -22.45041 -20.49101 -19.20876 -18.69995 -17.82832 -17.20672 -16.32984 -16.10926 -15.61656 -15.53092 -15.28117 -14.66356 -14.59232 -14.11113 -13.70536 -13.52310 -12.87061 -12.77473 -12.65313 -12.35080 -11.89113 -11.76554 -11.56854 -11.36786 -11.21115 -11.16744 -11.06198 -10.94944 -10.71019 -10.49455 -10.16745 -10.07463 -9.97193 -9.78400 -9.74633 -9.50335 -9.09155 -8.12837 -7.65221 -6.46220 -4.16114 2.65933 3.04161 3.16327 3.18102 3.40075 3.76049 4.04647 4.26636 4.82506 4.86774 5.22378 5.29921 5.37027 5.45794 5.60159 5.65470 5.76499 5.79433 5.91815 5.99684 6.04173 6.07886 6.23697 6.25516 6.32065 6.34682 6.41062 6.58491 6.67363 6.79747 6.83647 6.89525 7.23568 7.26733 7.40243 7.68926 7.78522 8.24833 8.30421 8.97205 9.40923 9.83463 10.53918 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013206 B = 0.007209 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.688250 B = 3883.110248 C = 5223.816128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.102 3.898 4 H 0.072 0.928 5 C 0.454 3.546 6 O -0.589 6.589 7 N -0.437 5.437 8 C -0.348 4.348 9 H 0.092 0.908 10 C 0.046 3.954 11 N -0.848 5.848 12 Si 0.908 3.092 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.268 1.268 16 C 0.125 3.875 17 C -0.125 4.125 18 C 0.483 3.517 19 O -0.513 6.513 20 O -0.525 6.525 21 C -0.098 4.098 22 C -0.127 4.127 23 C -0.140 4.140 24 C -0.134 4.134 25 H 0.033 0.967 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.272 0.728 29 H 0.119 0.881 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.401 0.599 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 -0.796 3.486 6.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.281 6.281 3 C 0.042 3.958 4 H 0.090 0.910 5 C 0.242 3.758 6 O -0.474 6.474 7 N -0.157 5.157 8 C -0.475 4.475 9 H 0.110 0.890 10 C -0.161 4.161 11 N -0.483 5.483 12 Si 0.733 3.267 13 H -0.200 1.200 14 H -0.207 1.207 15 H -0.192 1.192 16 C 0.001 3.999 17 C -0.164 4.164 18 C 0.325 3.675 19 O -0.401 6.401 20 O -0.337 6.337 21 C -0.116 4.116 22 C -0.165 4.165 23 C -0.178 4.178 24 C -0.171 4.171 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.259 0.741 34 H 0.150 0.850 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.316 -1.401 3.235 6.379 hybrid contribution -0.073 1.385 -0.168 1.397 sum -5.389 -0.016 3.067 6.201 Atomic orbital electron populations 1.22682 0.82186 1.01869 0.99445 1.87870 1.18642 1.26998 1.94611 1.21596 0.96079 0.84183 0.93966 0.90997 1.21024 0.82013 0.81773 0.90989 1.90540 1.56404 1.54292 1.46142 1.43441 1.57691 1.09471 1.05117 1.19365 1.14808 1.15586 0.97755 0.89035 1.25330 0.93687 0.99639 0.97475 1.69913 1.07951 1.34950 1.35480 0.86246 0.78828 0.81570 0.80014 1.20020 1.20672 1.19245 1.21199 0.93809 1.01879 0.82997 1.21868 1.03898 1.02945 0.87673 1.23787 0.81282 0.73061 0.89379 1.90704 1.26699 1.51908 1.70761 1.84589 1.42672 1.75129 1.31285 1.22773 0.94360 1.00673 0.93813 1.22766 0.99551 0.98681 0.95471 1.22752 0.97693 0.99673 0.97666 1.22902 0.97968 0.99477 0.96769 0.94848 0.94101 0.90339 0.91706 0.86294 0.91864 0.88590 0.87856 0.74147 0.84988 0.89546 0.92146 0.90687 0.92300 0.92054 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.81 101.05 1.09 1.64 16 2 O -0.36 -7.02 8.00 -55.09 -0.44 -7.46 16 3 C 0.10 2.06 1.75 -27.88 -0.05 2.01 16 4 H 0.07 1.36 7.03 -51.93 -0.36 0.99 16 5 C 0.45 10.75 6.99 -10.99 -0.08 10.67 16 6 O -0.59 -15.55 16.16 -14.31 -0.23 -15.78 16 7 N -0.44 -10.39 2.55 -114.82 -0.29 -10.68 16 8 C -0.35 -8.05 6.65 -14.93 -0.10 -8.15 16 9 H 0.09 2.01 6.79 -52.48 -0.36 1.65 16 10 C 0.05 1.08 4.95 -17.47 -0.09 0.99 16 11 N -0.85 -21.39 11.31 55.50 0.63 -20.76 16 12 Si 0.91 18.21 29.60 -169.99 -5.03 13.18 16 13 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 14 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 16 C 0.13 2.96 4.21 -4.04 -0.02 2.94 16 17 C -0.12 -2.44 6.11 -27.88 -0.17 -2.61 16 18 C 0.48 8.89 8.33 36.01 0.30 9.19 16 19 O -0.51 -11.01 16.74 -18.75 -0.31 -11.32 16 20 O -0.53 -7.52 13.42 -39.25 -0.53 -8.05 16 21 C -0.10 -1.86 3.23 -89.81 -0.29 -2.15 16 22 C -0.13 -2.34 7.48 -25.92 -0.19 -2.53 16 23 C -0.14 -2.14 8.08 -25.91 -0.21 -2.35 16 24 C -0.13 -2.09 7.54 -25.92 -0.20 -2.29 16 25 H 0.03 0.44 8.08 -51.93 -0.42 0.02 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 29 H 0.12 3.03 5.30 -51.93 -0.28 2.76 16 30 H 0.06 1.63 7.51 -51.93 -0.39 1.24 16 31 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 32 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 33 H 0.40 3.80 9.10 45.56 0.41 4.21 16 34 H 0.13 2.83 6.12 -51.93 -0.32 2.51 16 35 H 0.09 1.65 6.98 -51.93 -0.36 1.28 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.17 7.77 -51.93 -0.40 0.77 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -29.91 333.37 -6.17 -36.08 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -4.99 Total: 12.41 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 0.00 Total: 7.36 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.33 Total: -31.44 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -1.51 Total: -42.61 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.91 -6.17 -36.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599024474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.072 kcal (2) G-P(sol) polarization free energy of solvation -29.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds