Wall clock time and date at job start Tue Mar 31 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99521 * 2 1 4 4 H 1.08998 * 109.47211 * 30.00224 * 3 2 1 5 5 C 1.50703 * 109.47020 * 269.99574 * 3 2 1 6 6 O 1.21292 * 119.99962 * 355.00978 * 5 3 2 7 7 N 1.34773 * 119.99695 * 174.72483 * 5 3 2 8 8 C 1.37101 * 120.00485 * 0.27951 * 7 5 3 9 9 H 1.08004 * 119.99412 * 325.57855 * 8 7 5 10 10 C 1.38943 * 120.00043 * 145.57133 * 8 7 5 11 11 N 1.31410 * 120.00528 * 338.44151 * 10 8 7 12 12 Si 1.86804 * 119.99939 * 158.43878 * 10 8 7 13 13 H 1.48498 * 109.46993 * 89.99918 * 12 10 8 14 14 H 1.48498 * 109.47423 * 210.00501 * 12 10 8 15 15 H 1.48503 * 109.46943 * 330.00383 * 12 10 8 16 16 C 1.46499 * 119.99641 * 180.27921 * 7 5 3 17 17 C 1.52996 * 109.47246 * 85.78762 * 16 7 5 18 18 C 1.50706 * 109.47257 * 180.02562 * 17 16 7 19 19 O 1.20823 * 119.99506 * 359.97438 * 18 17 16 20 20 O 1.34228 * 120.00080 * 179.97438 * 18 17 16 21 21 C 1.53004 * 109.47020 * 149.99893 * 3 2 1 22 22 C 1.53784 * 113.61206 * 37.49407 * 21 3 2 23 23 C 1.53785 * 87.08158 * 220.01823 * 22 21 3 24 24 C 1.53778 * 113.61265 * 300.00054 * 21 3 2 25 25 H 1.09000 * 109.47612 * 299.99822 * 1 2 3 26 26 H 1.08990 * 109.47243 * 60.00036 * 1 2 3 27 27 H 1.08999 * 109.47267 * 180.02562 * 1 2 3 28 28 H 0.96998 * 120.00682 * 179.97438 * 11 10 8 29 29 H 1.09002 * 109.46871 * 205.78486 * 16 7 5 30 30 H 1.08993 * 109.47324 * 325.78100 * 16 7 5 31 31 H 1.09002 * 109.46960 * 299.99670 * 17 16 7 32 32 H 1.08993 * 109.47500 * 59.99445 * 17 16 7 33 33 H 0.96692 * 116.99945 * 179.97438 * 20 18 17 34 34 H 1.08993 * 112.85207 * 168.79951 * 21 3 2 35 35 H 1.08997 * 113.61729 * 334.56977 * 22 21 3 36 36 H 1.08998 * 113.61428 * 105.46963 * 22 21 3 37 37 H 1.08996 * 113.61405 * 270.88399 * 23 22 21 38 38 H 1.09001 * 113.68610 * 139.99395 * 23 22 21 39 39 H 1.09007 * 113.61138 * 254.52235 * 24 21 3 40 40 H 1.09000 * 113.61914 * 25.42879 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 1.9790 1.0105 -2.3414 7 7 2.6534 3.0143 -1.6687 8 6 2.9195 3.8665 -0.6282 9 1 2.3210 3.8254 0.2699 10 6 3.9591 4.7827 -0.7291 11 7 4.9343 4.5785 -1.5859 12 14 3.9706 6.3052 0.3533 13 1 4.6870 6.0070 1.6194 14 1 4.6601 7.4123 -0.3568 15 1 2.5736 6.7066 0.6578 16 6 2.8463 3.4624 -3.0501 17 6 1.5225 3.9935 -3.6035 18 6 1.7207 4.4538 -5.0248 19 8 2.8092 4.3665 -5.5418 20 8 0.6879 4.9608 -5.7163 21 6 3.3588 1.2634 0.7213 22 6 4.1598 -0.0222 0.4552 23 6 4.5529 0.0088 1.9417 24 6 3.2600 0.8050 2.1858 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 5.6599 5.2183 -1.6566 29 1 3.5941 4.2550 -3.0739 30 1 3.1851 2.6248 -3.6598 31 1 0.7746 3.2008 -3.5797 32 1 1.1836 4.8310 -2.9938 33 1 0.8639 5.2430 -6.6242 34 1 3.9390 2.1764 0.5877 35 1 3.5382 -0.8760 0.1856 36 1 5.0018 0.1203 -0.2221 37 1 5.4606 0.5780 2.1415 38 1 4.5565 -0.9735 2.4142 39 1 3.3758 1.6154 2.9057 40 1 2.3925 0.1774 2.3894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599024474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:04 Heat of formation + Delta-G solvation = -168.830932 kcal Electronic energy + Delta-G solvation = -24100.466274 eV Core-core repulsion = 20494.614771 eV Total energy + Delta-G solvation = -3605.851503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.45793 -41.02049 -39.23747 -37.82601 -37.17821 -36.62629 -33.80415 -32.68220 -30.16602 -27.27079 -26.99543 -26.37788 -25.72767 -23.95071 -22.02940 -21.02334 -20.11343 -19.37157 -18.81956 -18.01245 -17.65091 -17.16297 -17.00365 -16.85085 -16.28651 -16.03935 -15.80430 -15.23745 -15.15165 -14.39621 -14.31643 -14.20470 -13.88656 -13.48103 -13.22243 -13.07773 -13.02348 -12.70181 -12.67523 -12.58646 -12.51263 -12.20969 -12.10776 -11.90462 -11.69144 -11.41173 -11.32816 -11.15736 -10.94452 -10.81229 -9.88133 -9.52718 -8.27408 -6.02826 1.16085 1.44419 1.53249 1.63158 1.90879 2.02947 2.37698 2.77237 3.07737 3.21341 3.82551 3.93110 3.96496 4.01396 4.07592 4.10624 4.30876 4.43832 4.50211 4.56988 4.64803 4.71213 4.74951 4.85137 4.94121 4.96648 5.04166 5.13520 5.17997 5.22049 5.35765 5.48402 5.51364 5.57636 5.80643 5.95298 6.24515 6.42295 6.97578 7.13661 7.56917 7.99664 8.74058 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013206 B = 0.007209 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.688250 B = 3883.110248 C = 5223.816128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.378 6.378 3 C 0.112 3.888 4 H 0.088 0.912 5 C 0.439 3.561 6 O -0.627 6.627 7 N -0.443 5.443 8 C -0.350 4.350 9 H 0.108 0.892 10 C 0.007 3.993 11 N -0.888 5.888 12 Si 0.974 3.026 13 H -0.269 1.269 14 H -0.290 1.290 15 H -0.254 1.254 16 C 0.129 3.871 17 C -0.116 4.116 18 C 0.494 3.506 19 O -0.550 6.550 20 O -0.506 6.506 21 C -0.108 4.108 22 C -0.136 4.136 23 C -0.125 4.125 24 C -0.116 4.116 25 H 0.061 0.939 26 H 0.023 0.977 27 H 0.102 0.898 28 H 0.271 0.729 29 H 0.100 0.900 30 H 0.027 0.973 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.427 0.573 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 -0.105 5.700 9.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.296 6.296 3 C 0.052 3.948 4 H 0.105 0.895 5 C 0.229 3.771 6 O -0.515 6.515 7 N -0.162 5.162 8 C -0.477 4.477 9 H 0.125 0.875 10 C -0.197 4.197 11 N -0.524 5.524 12 Si 0.797 3.203 13 H -0.194 1.194 14 H -0.216 1.216 15 H -0.177 1.177 16 C 0.005 3.995 17 C -0.155 4.155 18 C 0.338 3.662 19 O -0.440 6.440 20 O -0.320 6.320 21 C -0.127 4.127 22 C -0.173 4.173 23 C -0.163 4.163 24 C -0.153 4.153 25 H 0.080 0.920 26 H 0.042 0.958 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.045 0.955 31 H 0.116 0.884 32 H 0.138 0.862 33 H 0.288 0.712 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.916 -0.695 5.447 8.831 hybrid contribution 0.373 1.129 -0.971 1.535 sum -6.544 0.434 4.476 7.940 Atomic orbital electron populations 1.22925 0.80236 1.03704 0.99930 1.87851 1.20827 1.26427 1.94487 1.21501 0.97087 0.84888 0.91361 0.89454 1.21848 0.81444 0.81303 0.92519 1.90499 1.58108 1.55131 1.47714 1.43672 1.57297 1.09922 1.05321 1.19713 1.14873 1.15117 0.97963 0.87454 1.26135 0.93001 1.01985 0.98545 1.70046 1.08841 1.35946 1.37590 0.85222 0.79307 0.77549 0.78180 1.19401 1.21594 1.17740 1.20966 0.95652 0.99798 0.83107 1.21615 1.01372 1.03476 0.89008 1.23382 0.81238 0.72551 0.89042 1.90705 1.28304 1.53595 1.71436 1.84500 1.40455 1.74073 1.32981 1.22730 0.93588 0.99627 0.96751 1.22775 0.98686 0.98285 0.97598 1.22700 0.97870 1.01053 0.94640 1.22832 0.98438 0.99870 0.94146 0.92021 0.95835 0.87955 0.91927 0.88188 0.95485 0.88373 0.86172 0.71161 0.87663 0.90348 0.94710 0.90170 0.89954 0.90299 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.81 113.37 1.23 2.05 16 2 O -0.38 -14.22 8.00 -129.99 -1.04 -15.26 16 3 C 0.11 4.45 1.75 29.85 0.05 4.50 16 4 H 0.09 3.13 7.03 -2.39 -0.02 3.12 16 5 C 0.44 21.28 6.99 87.66 0.61 21.90 16 6 O -0.63 -34.36 16.16 15.92 0.26 -34.11 16 7 N -0.44 -21.55 2.55 -635.55 -1.62 -23.17 16 8 C -0.35 -16.13 6.65 84.04 0.56 -15.57 16 9 H 0.11 4.54 6.79 -2.91 -0.02 4.52 16 10 C 0.01 0.33 4.95 84.92 0.42 0.75 16 11 N -0.89 -46.08 11.31 21.66 0.24 -45.83 16 12 Si 0.97 36.64 29.60 68.60 2.03 38.67 16 13 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 14 H -0.29 -11.26 7.11 99.48 0.71 -10.55 16 15 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 16 C 0.13 6.36 4.21 86.38 0.36 6.72 16 17 C -0.12 -4.57 6.11 29.85 0.18 -4.39 16 18 C 0.49 18.09 8.33 71.24 0.59 18.68 16 19 O -0.55 -24.06 16.74 21.97 0.37 -23.69 16 20 O -0.51 -13.47 13.42 -51.39 -0.69 -14.16 16 21 C -0.11 -4.06 3.23 -10.27 -0.03 -4.09 16 22 C -0.14 -5.02 7.48 31.12 0.23 -4.79 16 23 C -0.13 -3.54 8.08 31.12 0.25 -3.29 16 24 C -0.12 -3.28 7.54 31.12 0.23 -3.05 16 25 H 0.06 1.45 8.08 -2.39 -0.02 1.43 16 26 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 29 H 0.10 5.34 5.30 -2.39 -0.01 5.32 16 30 H 0.03 1.48 7.51 -2.39 -0.02 1.46 16 31 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 32 H 0.12 4.31 8.14 -2.39 -0.02 4.29 16 33 H 0.43 7.00 9.10 -74.06 -0.67 6.33 16 34 H 0.11 4.54 6.12 -2.39 -0.01 4.53 16 35 H 0.08 3.00 6.98 -2.39 -0.02 2.99 16 36 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.09 2.36 7.77 -2.39 -0.02 2.34 16 Total: -1.00 -67.16 333.37 4.63 -62.53 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.38 Total: 35.60 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 4.70 Total: 19.42 kcal Atomic # 7 Polarization: -67.63 SS G_CDS: -1.38 Total: -69.01 kcal Atomic # 8 Polarization: -86.11 SS G_CDS: -1.10 Total: -87.21 kcal Atomic # 14 Polarization: 36.64 SS G_CDS: 2.03 Total: 38.67 kcal Total: -67.16 4.63 -62.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599024474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.304 kcal (2) G-P(sol) polarization free energy of solvation -67.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds