Wall clock time and date at job start Tue Mar 31 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99804 * 2 1 4 4 C 1.53000 * 109.46834 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47101 * 300.00035 * 3 2 1 6 6 O 1.21297 * 119.99873 * 141.95458 * 5 3 2 7 7 N 1.34779 * 120.00219 * 321.95318 * 5 3 2 8 8 C 1.37101 * 119.99881 * 4.55436 * 7 5 3 9 9 H 1.07995 * 119.99809 * 319.41064 * 8 7 5 10 10 C 1.38946 * 119.99932 * 139.41449 * 8 7 5 11 11 N 1.31412 * 119.99845 * 343.65334 * 10 8 7 12 12 Si 1.86800 * 120.00091 * 163.65270 * 10 8 7 13 13 H 1.48492 * 109.46994 * 59.99761 * 12 10 8 14 14 H 1.48497 * 109.47139 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.46742 * 299.99856 * 12 10 8 16 16 C 1.46506 * 119.99996 * 184.55286 * 7 5 3 17 17 C 1.53001 * 109.47030 * 84.42762 * 16 7 5 18 18 C 1.50695 * 109.47173 * 180.02562 * 17 16 7 19 19 O 1.20831 * 119.99939 * 359.97438 * 18 17 16 20 20 O 1.34229 * 120.00093 * 180.02562 * 18 17 16 21 21 C 1.52992 * 109.47280 * 60.00499 * 3 2 1 22 22 C 1.52995 * 117.50125 * 133.62098 * 21 3 2 23 23 C 1.52997 * 117.50222 * 64.99346 * 21 3 2 24 24 H 1.08993 * 109.46951 * 299.99673 * 1 2 3 25 25 H 1.08994 * 109.47209 * 60.00189 * 1 2 3 26 26 H 1.09001 * 109.47003 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47210 * 59.99891 * 4 3 2 28 28 H 1.09002 * 109.47083 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.47357 * 299.99735 * 4 3 2 30 30 H 0.97002 * 119.99758 * 180.02562 * 11 10 8 31 31 H 1.08997 * 109.46624 * 204.42629 * 16 7 5 32 32 H 1.08999 * 109.47064 * 324.42634 * 16 7 5 33 33 H 1.09007 * 109.47131 * 299.99984 * 17 16 7 34 34 H 1.08999 * 109.46923 * 59.99632 * 17 16 7 35 35 H 0.96697 * 116.99768 * 180.02562 * 20 18 17 36 36 H 1.09002 * 115.54884 * 279.33105 * 21 3 2 37 37 H 1.08996 * 117.49911 * 0.02562 * 22 21 3 38 38 H 1.09004 * 117.50033 * 145.02008 * 22 21 3 39 39 H 1.08992 * 117.50516 * 214.98163 * 23 21 3 40 40 H 1.09004 * 117.49414 * 0.02562 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 1.5655 2.0533 -1.2304 6 8 1.3175 3.2387 -1.1631 7 7 1.4433 1.4050 -2.4057 8 6 1.6327 0.0483 -2.4631 9 1 2.4304 -0.4099 -1.8975 10 6 0.7984 -0.7369 -3.2491 11 7 -0.3473 -0.2550 -3.6760 12 14 1.3051 -2.4777 -3.6990 13 1 1.4869 -3.2760 -2.4603 14 1 0.2496 -3.0992 -4.5386 15 1 2.5819 -2.4414 -4.4565 16 6 1.1082 2.1500 -3.6219 17 6 2.3847 2.7342 -4.2302 18 6 2.0399 3.5010 -5.4808 19 8 0.8910 3.5725 -5.8482 20 8 3.0091 4.1038 -6.1871 21 6 1.5589 2.0647 1.2492 22 6 2.6293 2.8121 2.0469 23 6 2.0162 1.5268 2.6066 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.8567 0.6439 -0.8908 28 1 3.9788 2.1804 -0.0011 29 1 3.8574 0.6436 0.8891 30 1 -0.9299 -0.8034 -4.2245 31 1 0.6372 1.4793 -4.3405 32 1 0.4204 2.9586 -3.3747 33 1 2.8557 3.4049 -3.5114 34 1 3.0725 1.9255 -4.4773 35 1 2.7392 4.5841 -6.9818 36 1 0.5669 2.5132 1.1940 37 1 3.6550 2.7634 1.6815 38 1 2.3418 3.7529 2.5166 39 1 1.3255 1.6219 3.4443 40 1 2.6390 0.6323 2.6095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599031790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:27 Heat of formation + Delta-G solvation = -131.165560 kcal Electronic energy + Delta-G solvation = -24565.652978 eV Core-core repulsion = 20961.434768 eV Total energy + Delta-G solvation = -3604.218210 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.98308 -39.61587 -37.25721 -35.78959 -35.62390 -34.72209 -31.91216 -30.90103 -29.89372 -25.47609 -25.14030 -24.99750 -23.64526 -22.04159 -20.94994 -19.68800 -18.62497 -17.77748 -17.22388 -16.46044 -16.07850 -15.69672 -15.41897 -14.82058 -14.63006 -14.47734 -13.85165 -13.38424 -13.35621 -12.95927 -12.64233 -12.45021 -12.23452 -12.20570 -11.82631 -11.42909 -11.18127 -11.16060 -11.04718 -10.99348 -10.92447 -10.59517 -10.41294 -10.27182 -10.14170 -10.05791 -10.00984 -9.76649 -9.08591 -8.98333 -8.14053 -7.48536 -6.30926 -4.01725 2.65799 3.17368 3.25465 3.26311 3.38542 3.76809 4.04028 4.20470 4.61191 4.75025 5.02982 5.16976 5.32747 5.40584 5.51901 5.59870 5.75681 5.80825 5.91531 6.02855 6.08991 6.11871 6.18484 6.27852 6.30583 6.36305 6.43236 6.49597 6.54144 6.74907 6.80381 6.86060 6.91844 7.33079 7.58617 7.90084 8.00712 8.29369 8.44513 9.10944 9.43221 9.86124 10.72217 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013073 B = 0.008002 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.278057 B = 3498.106145 C = 4964.848733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.345 6.345 3 C 0.149 3.851 4 C -0.137 4.137 5 C 0.454 3.546 6 O -0.596 6.596 7 N -0.430 5.430 8 C -0.320 4.320 9 H 0.102 0.898 10 C 0.043 3.957 11 N -0.866 5.866 12 Si 0.911 3.089 13 H -0.271 1.271 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.128 3.872 17 C -0.125 4.125 18 C 0.483 3.517 19 O -0.514 6.514 20 O -0.525 6.525 21 C -0.153 4.153 22 C -0.174 4.174 23 C -0.173 4.173 24 H 0.019 0.981 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.269 0.731 31 H 0.115 0.885 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.401 0.599 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.187 1.757 3.665 7.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.263 6.263 3 C 0.106 3.894 4 C -0.194 4.194 5 C 0.242 3.758 6 O -0.481 6.481 7 N -0.148 5.148 8 C -0.447 4.447 9 H 0.119 0.881 10 C -0.163 4.163 11 N -0.503 5.503 12 Si 0.738 3.262 13 H -0.196 1.196 14 H -0.212 1.212 15 H -0.200 1.200 16 C 0.004 3.996 17 C -0.164 4.164 18 C 0.325 3.675 19 O -0.401 6.401 20 O -0.337 6.337 21 C -0.172 4.172 22 C -0.211 4.211 23 C -0.210 4.210 24 H 0.038 0.962 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.122 0.878 35 H 0.259 0.741 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.785 1.876 3.812 7.178 hybrid contribution -0.329 -0.388 -0.898 1.033 sum 5.456 1.488 2.913 6.361 Atomic orbital electron populations 1.22541 0.81355 1.01655 0.99749 1.87973 1.19770 1.24241 1.94336 1.20739 0.94322 0.83741 0.90588 1.21829 0.92364 1.02059 1.03188 1.20985 0.81838 0.87656 0.85358 1.90541 1.55134 1.16717 1.85745 1.43464 1.60174 1.07336 1.03790 1.19551 1.14882 0.80391 1.29924 0.88082 1.25352 0.93955 0.99216 0.97733 1.69893 1.08116 1.37959 1.34332 0.86249 0.78215 0.82957 0.78817 1.19565 1.21242 1.20046 1.21152 0.92223 0.96769 0.89496 1.21881 1.03716 0.99540 0.91297 1.23785 0.82819 0.76082 0.84813 1.90708 1.21789 1.58418 1.69190 1.84590 1.42914 1.65051 1.41104 1.22528 0.99891 1.02978 0.91793 1.22998 0.98630 0.95571 1.03855 1.22875 1.03942 0.97811 0.96380 0.96249 0.91700 0.91006 0.90839 0.91315 0.91791 0.92088 0.86738 0.91930 0.88573 0.87768 0.74146 0.87887 0.88373 0.89338 0.89395 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 9.65 101.05 0.98 1.87 16 2 O -0.35 -7.16 7.71 -35.23 -0.27 -7.43 16 3 C 0.15 2.94 0.52 -91.78 -0.05 2.89 16 4 C -0.14 -2.31 7.34 37.16 0.27 -2.04 16 5 C 0.45 10.50 5.36 -10.98 -0.06 10.44 16 6 O -0.60 -15.13 15.80 5.54 0.09 -15.04 16 7 N -0.43 -10.16 2.23 -114.81 -0.26 -10.41 16 8 C -0.32 -7.57 5.87 -14.93 -0.09 -7.66 16 9 H 0.10 2.37 5.45 -52.49 -0.29 2.09 16 10 C 0.04 1.03 5.00 -17.47 -0.09 0.94 16 11 N -0.87 -22.19 11.45 55.50 0.64 -21.55 16 12 Si 0.91 19.26 29.58 -169.99 -5.03 14.23 16 13 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 14 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 16 C 0.13 2.99 4.19 -4.04 -0.02 2.97 16 17 C -0.13 -2.42 6.10 -27.88 -0.17 -2.59 16 18 C 0.48 8.80 8.33 36.00 0.30 9.10 16 19 O -0.51 -10.95 16.74 -18.75 -0.31 -11.26 16 20 O -0.52 -7.44 13.42 -39.26 -0.53 -7.97 16 21 C -0.15 -2.72 3.40 -90.63 -0.31 -3.03 16 22 C -0.17 -2.56 9.65 -26.73 -0.26 -2.81 16 23 C -0.17 -2.48 9.85 -26.73 -0.26 -2.74 16 24 H 0.02 0.36 6.99 -51.93 -0.36 -0.01 16 25 H 0.06 1.55 6.34 -51.93 -0.33 1.22 16 26 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.07 1.28 6.89 -51.93 -0.36 0.92 16 28 H 0.07 1.08 6.75 -51.93 -0.35 0.73 16 29 H 0.06 0.94 6.96 -51.93 -0.36 0.58 16 30 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.11 2.92 5.60 -51.93 -0.29 2.63 16 32 H 0.06 1.60 7.49 -51.93 -0.39 1.21 16 33 H 0.10 1.83 8.14 -51.93 -0.42 1.40 16 34 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 35 H 0.40 3.75 9.10 45.56 0.41 4.17 16 36 H 0.10 2.01 7.80 -51.93 -0.41 1.60 16 37 H 0.10 1.36 5.89 -51.93 -0.31 1.05 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.10 1.33 7.29 -51.93 -0.38 0.95 16 LS Contribution 325.10 15.07 4.90 4.90 Total: -1.00 -29.62 325.10 -5.18 -34.80 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -4.65 Total: 12.39 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 0.25 Total: 7.35 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.38 Total: -31.97 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -1.03 Total: -41.70 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.62 -5.18 -34.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599031790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.365 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds