Wall clock time and date at job start Tue Mar 31 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99804 * 2 1 4 4 C 1.53000 * 109.46834 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47101 * 300.00035 * 3 2 1 6 6 O 1.21297 * 119.99873 * 141.95458 * 5 3 2 7 7 N 1.34779 * 120.00219 * 321.95318 * 5 3 2 8 8 C 1.37101 * 119.99881 * 4.55436 * 7 5 3 9 9 H 1.07995 * 119.99809 * 319.41064 * 8 7 5 10 10 C 1.38946 * 119.99932 * 139.41449 * 8 7 5 11 11 N 1.31412 * 119.99845 * 343.65334 * 10 8 7 12 12 Si 1.86800 * 120.00091 * 163.65270 * 10 8 7 13 13 H 1.48492 * 109.46994 * 59.99761 * 12 10 8 14 14 H 1.48497 * 109.47139 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.46742 * 299.99856 * 12 10 8 16 16 C 1.46506 * 119.99996 * 184.55286 * 7 5 3 17 17 C 1.53001 * 109.47030 * 84.42762 * 16 7 5 18 18 C 1.50695 * 109.47173 * 180.02562 * 17 16 7 19 19 O 1.20831 * 119.99939 * 359.97438 * 18 17 16 20 20 O 1.34229 * 120.00093 * 180.02562 * 18 17 16 21 21 C 1.52992 * 109.47280 * 60.00499 * 3 2 1 22 22 C 1.52995 * 117.50125 * 133.62098 * 21 3 2 23 23 C 1.52997 * 117.50222 * 64.99346 * 21 3 2 24 24 H 1.08993 * 109.46951 * 299.99673 * 1 2 3 25 25 H 1.08994 * 109.47209 * 60.00189 * 1 2 3 26 26 H 1.09001 * 109.47003 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47210 * 59.99891 * 4 3 2 28 28 H 1.09002 * 109.47083 * 179.97438 * 4 3 2 29 29 H 1.09001 * 109.47357 * 299.99735 * 4 3 2 30 30 H 0.97002 * 119.99758 * 180.02562 * 11 10 8 31 31 H 1.08997 * 109.46624 * 204.42629 * 16 7 5 32 32 H 1.08999 * 109.47064 * 324.42634 * 16 7 5 33 33 H 1.09007 * 109.47131 * 299.99984 * 17 16 7 34 34 H 1.08999 * 109.46923 * 59.99632 * 17 16 7 35 35 H 0.96697 * 116.99768 * 180.02562 * 20 18 17 36 36 H 1.09002 * 115.54884 * 279.33105 * 21 3 2 37 37 H 1.08996 * 117.49911 * 0.02562 * 22 21 3 38 38 H 1.09004 * 117.50033 * 145.02008 * 22 21 3 39 39 H 1.08992 * 117.50516 * 214.98163 * 23 21 3 40 40 H 1.09004 * 117.49414 * 0.02562 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 1.5655 2.0533 -1.2304 6 8 1.3175 3.2387 -1.1631 7 7 1.4433 1.4050 -2.4057 8 6 1.6327 0.0483 -2.4631 9 1 2.4304 -0.4099 -1.8975 10 6 0.7984 -0.7369 -3.2491 11 7 -0.3473 -0.2550 -3.6760 12 14 1.3051 -2.4777 -3.6990 13 1 1.4869 -3.2760 -2.4603 14 1 0.2496 -3.0992 -4.5386 15 1 2.5819 -2.4414 -4.4565 16 6 1.1082 2.1500 -3.6219 17 6 2.3847 2.7342 -4.2302 18 6 2.0399 3.5010 -5.4808 19 8 0.8910 3.5725 -5.8482 20 8 3.0091 4.1038 -6.1871 21 6 1.5589 2.0647 1.2492 22 6 2.6293 2.8121 2.0469 23 6 2.0162 1.5268 2.6066 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.8567 0.6439 -0.8908 28 1 3.9788 2.1804 -0.0011 29 1 3.8574 0.6436 0.8891 30 1 -0.9299 -0.8034 -4.2245 31 1 0.6372 1.4793 -4.3405 32 1 0.4204 2.9586 -3.3747 33 1 2.8557 3.4049 -3.5114 34 1 3.0725 1.9255 -4.4773 35 1 2.7392 4.5841 -6.9818 36 1 0.5669 2.5132 1.1940 37 1 3.6550 2.7634 1.6815 38 1 2.3418 3.7529 2.5166 39 1 1.3255 1.6219 3.4443 40 1 2.6390 0.6323 2.6095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599031790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:26 Heat of formation + Delta-G solvation = -150.689781 kcal Electronic energy + Delta-G solvation = -24566.499612 eV Core-core repulsion = 20961.434768 eV Total energy + Delta-G solvation = -3605.064844 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.58555 -41.11922 -38.84196 -37.30179 -37.12225 -36.42250 -33.73872 -32.54756 -31.42988 -27.13382 -26.95988 -26.53080 -25.22846 -23.17588 -22.43981 -21.35052 -20.30939 -19.25320 -18.83647 -18.06501 -17.58252 -17.24341 -16.96699 -16.45690 -16.26466 -16.17310 -15.47207 -15.08821 -14.91928 -14.42096 -14.27816 -13.96677 -13.87189 -13.59780 -13.34663 -13.02603 -12.88635 -12.73588 -12.57352 -12.51162 -12.40984 -12.11950 -12.06210 -11.91425 -11.79397 -11.66473 -11.27587 -11.08158 -10.81827 -10.72855 -9.91004 -9.35760 -8.16710 -5.92159 1.17886 1.48836 1.53195 1.60007 1.88181 2.07452 2.42863 2.70511 3.09924 3.16251 3.31338 3.83267 3.96374 3.99065 4.11888 4.14320 4.20337 4.37897 4.51016 4.58250 4.65962 4.72459 4.78066 4.85521 4.90402 4.94901 5.01301 5.04096 5.15859 5.20018 5.33850 5.37090 5.41234 5.58009 5.69378 6.06926 6.36490 6.57372 6.99193 7.24206 7.59845 8.02218 8.86530 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013073 B = 0.008002 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.278057 B = 3498.106145 C = 4964.848733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.351 6.351 3 C 0.149 3.851 4 C -0.133 4.133 5 C 0.444 3.556 6 O -0.627 6.627 7 N -0.438 5.438 8 C -0.315 4.315 9 H 0.108 0.892 10 C 0.005 3.995 11 N -0.899 5.899 12 Si 0.968 3.032 13 H -0.265 1.265 14 H -0.294 1.294 15 H -0.266 1.266 16 C 0.133 3.867 17 C -0.116 4.116 18 C 0.495 3.505 19 O -0.551 6.551 20 O -0.506 6.506 21 C -0.188 4.188 22 C -0.162 4.162 23 C -0.147 4.147 24 H 0.035 0.965 25 H 0.023 0.977 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.265 0.735 31 H 0.092 0.908 32 H 0.027 0.973 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.427 0.573 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.562 1.045 4.785 9.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.268 6.268 3 C 0.107 3.893 4 C -0.189 4.189 5 C 0.234 3.766 6 O -0.514 6.514 7 N -0.155 5.155 8 C -0.442 4.442 9 H 0.125 0.875 10 C -0.197 4.197 11 N -0.538 5.538 12 Si 0.793 3.207 13 H -0.189 1.189 14 H -0.221 1.221 15 H -0.191 1.191 16 C 0.009 3.991 17 C -0.155 4.155 18 C 0.338 3.662 19 O -0.441 6.441 20 O -0.320 6.320 21 C -0.207 4.207 22 C -0.199 4.199 23 C -0.184 4.184 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.046 0.954 33 H 0.119 0.881 34 H 0.138 0.862 35 H 0.288 0.712 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.201 1.176 4.919 9.635 hybrid contribution -1.079 -0.064 -1.258 1.658 sum 7.122 1.112 3.661 8.085 Atomic orbital electron populations 1.22396 0.81584 1.01866 0.98520 1.87938 1.19534 1.25134 1.94239 1.20842 0.95986 0.82959 0.89542 1.21850 0.89895 1.03055 1.04151 1.21756 0.81039 0.87592 0.86237 1.90505 1.56403 1.18203 1.86328 1.43652 1.60095 1.07620 1.04159 1.19704 1.14577 0.80336 1.29610 0.87481 1.26031 0.93688 1.02328 0.97665 1.70034 1.09278 1.39179 1.35305 0.85352 0.77782 0.78989 0.78537 1.18932 1.22050 1.19086 1.20886 0.93652 0.95207 0.89359 1.21629 1.01569 1.00235 0.92050 1.23394 0.82557 0.75690 0.84554 1.90710 1.23395 1.59898 1.70140 1.84502 1.41036 1.64475 1.41987 1.22361 0.99827 1.05689 0.92849 1.23136 0.98199 0.96338 1.02178 1.22979 1.03253 0.97930 0.94201 0.94630 0.95808 0.89983 0.91627 0.90259 0.89043 0.92547 0.89013 0.95413 0.88070 0.86200 0.71184 0.90689 0.87101 0.88366 0.87685 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.18 9.65 113.37 1.09 3.28 16 2 O -0.35 -14.19 7.71 -148.98 -1.15 -15.34 16 3 C 0.15 5.75 0.52 -11.54 -0.01 5.74 16 4 C -0.13 -4.13 7.34 71.98 0.53 -3.60 16 5 C 0.44 20.93 5.36 87.66 0.47 21.40 16 6 O -0.63 -32.81 15.80 -3.08 -0.05 -32.86 16 7 N -0.44 -21.16 2.23 -635.52 -1.42 -22.57 16 8 C -0.31 -14.93 5.87 84.04 0.49 -14.44 16 9 H 0.11 4.92 5.45 -2.91 -0.02 4.91 16 10 C 0.00 0.22 5.00 84.93 0.42 0.65 16 11 N -0.90 -47.65 11.45 21.66 0.25 -47.40 16 12 Si 0.97 39.18 29.58 68.60 2.03 41.21 16 13 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 14 H -0.29 -12.20 7.11 99.48 0.71 -11.50 16 15 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 16 C 0.13 6.50 4.19 86.38 0.36 6.86 16 17 C -0.12 -4.49 6.10 29.85 0.18 -4.31 16 18 C 0.49 17.83 8.33 71.23 0.59 18.42 16 19 O -0.55 -23.90 16.74 21.95 0.37 -23.53 16 20 O -0.51 -13.24 13.42 -51.41 -0.69 -13.93 16 21 C -0.19 -6.47 3.40 -10.80 -0.04 -6.50 16 22 C -0.16 -4.30 9.65 30.59 0.30 -4.01 16 23 C -0.15 -3.72 9.85 30.59 0.30 -3.42 16 24 H 0.04 1.32 6.99 -2.39 -0.02 1.30 16 25 H 0.02 1.16 6.34 -2.39 -0.02 1.15 16 26 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 27 H 0.06 2.14 6.89 -2.39 -0.02 2.13 16 28 H 0.08 2.29 6.75 -2.39 -0.02 2.28 16 29 H 0.09 2.34 6.96 -2.39 -0.02 2.32 16 30 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 31 H 0.09 4.91 5.60 -2.39 -0.01 4.89 16 32 H 0.03 1.50 7.49 -2.39 -0.02 1.48 16 33 H 0.10 3.82 8.14 -2.38 -0.02 3.80 16 34 H 0.12 4.25 8.14 -2.39 -0.02 4.23 16 35 H 0.43 6.86 9.10 -74.06 -0.67 6.18 16 36 H 0.07 2.97 7.80 -2.39 -0.02 2.95 16 37 H 0.11 2.67 5.89 -2.39 -0.01 2.65 16 38 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.11 2.51 7.29 -2.38 -0.02 2.49 16 Total: -1.00 -66.18 325.10 4.44 -61.74 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.40 Total: 32.62 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: 4.70 Total: 20.06 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -1.17 Total: -69.97 kcal Atomic # 8 Polarization: -84.14 SS G_CDS: -1.52 Total: -85.66 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -66.18 4.44 -61.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599031790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.953 kcal (2) G-P(sol) polarization free energy of solvation -66.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds